Guide to the Human Genome
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Name: SEPP1 Sequence: fasta or formatted (381aa) NCBI GI: 148277018
Description:

selenoprotein P isoform 1 precursor

Referenced in:

Selenium Proteins

Other entries for this name:
alt prot [411aa] selenoprotein P isoform 2
alt mRNA [381aa] selenoprotein P isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         21           2
 C cysteine            4.5         17           2
 D aspartate           3.9         15           2
 E glutamate           6.3         24           2
 F phenylalanine       1.6          6           1
 G glycine             4.7         18           2
 H histidine           6.0         23           4
 I isoleucine          3.9         15           1
 K lysine              6.8         26           2
 L leucine            11.3         43           2
 M methionine          0.8          3           1
 N asparagine          4.5         17           1
 P proline             6.3         24           2
 Q glutamine           6.6         25           2
 R arginine            4.2         16           1
 S serine              8.9         34           2
 T threonine           4.5         17           2
 U selenocysteine      2.6         10           1
 V valine              3.7         14           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   selenoprotein P isoform 1 precursor 
SEPP1                 1.000   selenoprotein P isoform 2 
SEPP1                 1.000   selenoprotein P isoform 1 precursor 
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.025   PREDICTED: functional smad suppressing element 18 [...
POU3F2                0.025   POU domain, class 3, transcription factor 2 
POU3F3                0.024   POU class 3 homeobox 3 
FOXB2                 0.024   forkhead box B2 
C10orf140             0.021   hypothetical protein LOC387640 
NR4A3                 0.020   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.020   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.020   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.020   nuclear receptor subfamily 4, group A, member 3 isof...
DYRK1A                0.020   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.020   dual-specificity tyrosine-(Y)-phosphorylation regula...
NUFIP2                0.019   nuclear fragile X mental retardation protein interac...
CCNT1                 0.017   cyclin T1 
ONECUT2               0.016   one cut domain, family member 2 
MAFB                  0.016   transcription factor MAFB 
GATA6                 0.016   GATA binding protein 6 
IQSEC2                0.016   IQ motif and Sec7 domain 2 isoform1 
COL3A1                0.016   collagen type III alpha 1 preproprotein 
HOXA1                 0.016   homeobox A1 isoform a 
CBX4                  0.016   chromobox homolog 4 
CREB5                 0.015   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.015   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.015   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.015   cAMP responsive element binding protein 5 isoform al...
HRG                   0.015   histidine-rich glycoprotein precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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