Guide to the Human Genome
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Name: C20orf11 Sequence: fasta or formatted (228aa) NCBI GI: 8923557
Description:

chromosome 20 open reading frame 11

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         15           2
 C cysteine            0.4          1           1
 D aspartate           4.8         11           1
 E glutamate          14.0         32           2
 F phenylalanine       2.6          6           1
 G glycine             2.6          6           1
 H histidine           2.2          5           1
 I isoleucine          5.3         12           1
 K lysine              7.5         17           2
 L leucine            14.0         32           3
 M methionine          3.9          9           1
 N asparagine          3.9          9           2
 P proline             3.5          8           1
 Q glutamine           6.6         15           3
 R arginine            5.3         12           1
 S serine              4.4         10           1
 T threonine           4.8         11           1
 V valine              3.5          8           1
 W tryptophan          1.3          3           1
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 20 open reading frame 11 
MAEA                  0.066   macrophage erythroblast attacher isoform 1 
RANBP9                0.063   RAN binding protein 9 
RANBP10               0.052   RAN binding protein 10 
GOLGA4                0.031   golgi autoantigen, golgin subfamily a, 4 
UTRN                  0.026   utrophin 
CROCC                 0.021   ciliary rootlet coiled-coil 
SMU1                  0.021   smu-1 suppressor of mec-8 and unc-52 homolog 
TBL1X                 0.016   transducin beta-like 1X isoform b 
TBL1X                 0.016   transducin beta-like 1X isoform b 
TBL1X                 0.016   transducin beta-like 1X isoform a 
TBL1X                 0.016   transducin beta-like 1X isoform a 
IQGAP1                0.016   IQ motif containing GTPase activating protein 1 [Homo...
MAEA                  0.016   macrophage erythroblast attacher isoform 2 
PAFAH1B1              0.016   platelet-activating factor acetylhydrolase, isoform I...
STARD9                0.016   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.016   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.016   PREDICTED: StAR-related lipid transfer (START) doma...
TBL1XR1               0.016   transducin (beta)-like 1 X-linked receptor 1 
JAKMIP3               0.014   Janus kinase and microtubule interacting protein 3 ...
TRIM21                0.014   tripartite motif protein 21 
TRIP11                0.014   thyroid hormone receptor interactor 11 
CCDC7                 0.014   coiled-coil domain containing 7 
CCDC7                 0.014   coiled-coil domain containing 7 
C7orf10               0.012   dermal papilla derived protein 13 
APBA1                 0.012   amyloid beta A4 precursor protein-binding, family A,...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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