Guide to the Human Genome
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Name: SNAI3 Sequence: fasta or formatted (292aa) NCBI GI: 77404438
Description:

snail homolog 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         24           2
 C cysteine            5.8         17           2
 D aspartate           3.4         10           1
 E glutamate           4.8         14           2
 F phenylalanine       2.4          7           1
 G glycine             6.5         19           2
 H histidine           6.2         18           1
 I isoleucine          2.1          6           1
 K lysine              4.8         14           2
 L leucine            12.0         35           2
 M methionine          1.4          4           1
 N asparagine          1.7          5           1
 P proline             8.9         26           2
 Q glutamine           2.1          6           1
 R arginine            9.6         28           2
 S serine              7.5         22           2
 T threonine           5.1         15           1
 V valine              4.5         13           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   snail homolog 3 
SNAI2                 0.387   snail 2 
SNAI1                 0.303   snail 1 homolog 
SCRT1                 0.245   scratch 
SCRT2                 0.243   scratch 2 protein 
ZNF846                0.171   zinc finger protein 846 
ZNF782                0.166   zinc finger protein 782 
ZNF333                0.159   zinc finger protein 333 
ZNF177                0.157   zinc finger protein 177 
ZNF709                0.152   zinc finger protein 709 isoform b 
ZNF709                0.152   zinc finger protein 709 isoform a 
ZNF408                0.152   zinc finger protein 408 
ZNF700                0.151   zinc finger protein 700 
ZNF778                0.151   zinc finger protein 778 
ZNF667                0.151   zinc finger protein 667 
ZNF670                0.151   zinc finger protein 670 
ZNF121                0.149   zinc finger protein 121 
ZNF560                0.149   zinc finger protein 560 
ZNF433                0.149   zinc finger protein 433 
ZNF44                 0.147   zinc finger protein 44 
ZNF77                 0.147   zinc finger protein 77 
ZNF554                0.147   zinc finger protein 554 
ZNF569                0.147   zinc finger protein 569 
ZBTB17                0.147   zinc finger and BTB domain containing 17 
ZFP2                  0.147   zinc finger protein 2 homolog 
ZNF79                 0.146   zinc finger protein 79 
ZNF14                 0.146   zinc finger protein 14 
ZNF627                0.146   zinc finger protein 627 
ZNF490                0.146   zinc finger protein 490 
ZNF136                0.146   zinc finger protein 136 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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