Guide to the Human Genome
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Name: C11orf51 Sequence: fasta or formatted (121aa) NCBI GI: 7661622
Description:

hypothetical protein LOC25906

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          3           1
 C cysteine            0.8          1           1
 D aspartate          17.4         21           2
 E glutamate          19.0         23           4
 F phenylalanine       2.5          3           1
 G glycine             2.5          3           1
 H histidine           1.7          2           1
 I isoleucine          2.5          3           1
 K lysine              1.7          2           1
 L leucine             5.8          7           1
 M methionine          5.0          6           1
 N asparagine          5.8          7           2
 P proline             5.0          6           1
 Q glutamine           9.1         11           3
 R arginine            1.7          2           1
 S serine              5.8          7           1
 T threonine           3.3          4           1
 V valine              4.1          5           1
 W tryptophan          2.5          3           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC25906 
NCL                   0.124   nucleolin 
UBTF                  0.124   upstream binding transcription factor, RNA polymera...
UBTF                  0.124   upstream binding transcription factor, RNA polymera...
UBTF                  0.124   upstream binding transcription factor, RNA polymerase...
ATAD2                 0.112   ATPase family, AAA domain containing 2 
ANP32B                0.112   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
TPR                   0.107   nuclear pore complex-associated protein TPR 
BAZ2B                 0.103   bromodomain adjacent to zinc finger domain, 2B [Homo...
LOC646817             0.094   PREDICTED: similar to SET translocation 
LOC646817             0.094   PREDICTED: similar to SET translocation 
LOC646817             0.094   PREDICTED: similar to SET translocation 
SET                   0.094   SET translocation (myeloid leukemia-associated) iso...
SET                   0.094   SET translocation (myeloid leukemia-associated) iso...
MTERFD2               0.094   MTERF domain containing 2 
DAXX                  0.094   death-domain associated protein isoform a 
DAXX                  0.094   death-domain associated protein isoform a 
DAXX                  0.094   death-domain associated protein isoform b 
VPRBP                 0.090   HIV-1 Vpr binding protein 
MYT1L                 0.090   myelin transcription factor 1-like 
YTHDC1                0.090   splicing factor YT521-B isoform 2 
YTHDC1                0.090   splicing factor YT521-B isoform 1 
PELP1                 0.090   proline, glutamic acid and leucine rich protein 1 [...
NRD1                  0.086   nardilysin isoform b 
NRD1                  0.086   nardilysin isoform a 
ZCCHC6                0.082   zinc finger, CCHC domain containing 6 
ESF1                  0.082   ABT1-associated protein 
C14orf37              0.082   hypothetical protein LOC145407 
LOC645490             0.082   PREDICTED: similar to hCG1991922 
HUWE1                 0.082   HECT, UBA and WWE domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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