Guide to the Human Genome
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Name: SMAGP Sequence: fasta or formatted (97aa) NCBI GI: 76496487
Description:

small trans-membrane and glycosylated protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {97aa} small trans-membrane and glycosylated protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          6           1
 C cysteine            0.0          0           0
 D aspartate           2.1          2           1
 E glutamate          11.3         11           2
 F phenylalanine       4.1          4           2
 G glycine             4.1          4           1
 H histidine           0.0          0           0
 I isoleucine          7.2          7           1
 K lysine              4.1          4           1
 L leucine            12.4         12           2
 M methionine          3.1          3           1
 N asparagine          1.0          1           1
 P proline             7.2          7           1
 Q glutamine           2.1          2           1
 R arginine            1.0          1           1
 S serine              9.3          9           1
 T threonine          11.3         11           2
 V valine              8.2          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            5.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small trans-membrane and glycosylated protein 
SMAGP                 1.000   small trans-membrane and glycosylated protein 
CADM2                 0.178   immunoglobulin superfamily, member 4D 
CADM1                 0.110   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM3                 0.110   cell adhesion molecule 3 isoform 2 
CADM3                 0.110   cell adhesion molecule 3 isoform 1 
CADM1                 0.092   immunoglobulin superfamily, member 4D isoform 2 [Ho...
GYPC                  0.092   glycophorin C isoform 1 
GYPC                  0.086   glycophorin C isoform 2 
CNTNAP2               0.061   cell recognition molecule Caspr2 precursor 
EDAR                  0.049   ectodysplasin A receptor precursor 
CADM4                 0.031   cell adhesion molecule 4 
TIMD4                 0.031   T-cell immunoglobulin and mucin domain containing 4...
TIMD4                 0.031   T-cell immunoglobulin and mucin domain containing 4...
CNTNAP1               0.025   contactin associated protein 1 precursor 
PTPRE                 0.018   protein tyrosine phosphatase, receptor type, E isofor...
GPNMB                 0.018   glycoprotein (transmembrane) nmb isoform a precursor...
GPNMB                 0.018   glycoprotein (transmembrane) nmb isoform b precursor ...
CATSPER2              0.018   sperm-associated cation channel 2 isoform 2 
CATSPER2              0.018   sperm-associated cation channel 2 isoform 1 
LOC100289232          0.012   PREDICTED: hypothetical protein XP_002343935 
DDR2                  0.012   discoidin domain receptor family, member 2 precursor...
DDR2                  0.012   discoidin domain receptor family, member 2 precursor...
XKR3                  0.012   X Kell blood group precursor-related family, member...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform e...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.012   voltage-gated sodium channel type V alpha isoform c...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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