Guide to the Human Genome
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Name: CNTNAP2 Sequence: fasta or formatted (1331aa) NCBI GI: 7662350
Description:

cell recognition molecule Caspr2 precursor

Referenced in:

Gene Structure
Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         74           2
 C cysteine            2.8         37           1
 D aspartate           5.6         75           2
 E glutamate           4.7         62           2
 F phenylalanine       4.4         59           2
 G glycine             8.3        110           2
 H histidine           3.1         41           2
 I isoleucine          5.2         69           2
 K lysine              4.6         61           2
 L leucine             7.5        100           3
 M methionine          1.6         21           1
 N asparagine          5.9         78           2
 P proline             4.6         61           1
 Q glutamine           4.6         61           2
 R arginine            4.3         57           2
 S serine              9.6        128           5
 T threonine           5.6         74           2
 V valine              6.1         81           3
 W tryptophan          1.9         25           2
 Y tyrosine            4.3         57           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell recognition molecule Caspr2 precursor 
CNTNAP5               0.478   contactin associated protein-like 5 
CNTNAP4               0.459   cell recognition protein CASPR4 isoform 1 
CNTNAP3               0.435   cell recognition molecule CASPR3 
CNTNAP4               0.434   cell recognition protein CASPR4 isoform 2 
LOC389722             0.431   PREDICTED: hypothetical protein LOC389722 isoform 1...
CNTNAP1               0.408   contactin associated protein 1 precursor 
LOC389722             0.332   PREDICTED: hypothetical protein LOC389722 isoform 2...
LOC643827             0.173   PREDICTED: similar to cell recognition molecule CAS...
LOC642406             0.124   PREDICTED: similar to contactin associated protein-...
NRXN1                 0.051   neurexin 1 isoform alpha1 precursor 
FLJ37512              0.051   PREDICTED: novel protein similar to contactin assoc...
NRXN1                 0.049   neurexin 1 isoform alpha2 precursor 
NRXN3                 0.047   neurexin 3 isoform 1 precursor 
NRXN2                 0.040   neurexin 2 isoform alpha-2 precursor 
NRXN2                 0.038   neurexin 2 isoform alpha-1 precursor 
MFGE8                 0.027   milk fat globule-EGF factor 8 protein isoform a [Ho...
LOC389722             0.025   PREDICTED: similar to cell recognition molecule CAS...
F5                    0.024   coagulation factor V precursor 
EGFLAM                0.023   EGF-like, fibronectin type III and laminin G domains...
EGFLAM                0.023   EGF-like, fibronectin type III and laminin G domains...
RS1                   0.023   X-linked juvenile retinoschisis protein precursor [H...
USH2A                 0.022   usherin isoform B 
DCBLD2                0.022   discoidin, CUB and LCCL domain containing 2 
AEBP1                 0.021   adipocyte enhancer binding protein 1 precursor [Homo...
F8                    0.021   coagulation factor VIII isoform b precursor 
F8                    0.021   coagulation factor VIII isoform a precursor 
GYPC                  0.021   glycophorin C isoform 1 
CPXM2                 0.020   carboxypeptidase X (M14 family), member 2 
EDIL3                 0.020   EGF-like repeats and discoidin I-like domains-contai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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