Guide to the Human Genome
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Name: CLIC4 Sequence: fasta or formatted (253aa) NCBI GI: 7330335
Description:

chloride intracellular channel 4

Referenced in:

Chloride Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         14           1
 C cysteine            1.6          4           1
 D aspartate           6.3         16           1
 E glutamate           9.1         23           2
 F phenylalanine       5.1         13           1
 G glycine             4.0         10           1
 H histidine           1.2          3           1
 I isoleucine          5.1         13           1
 K lysine              9.9         25           2
 L leucine            11.5         29           2
 M methionine          2.8          7           1
 N asparagine          5.9         15           1
 P proline             6.7         17           2
 Q glutamine           1.2          3           1
 R arginine            3.6          9           1
 S serine              6.3         16           1
 T threonine           5.5         14           2
 V valine              5.1         13           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride intracellular channel 4 
CLIC5                 0.752   chloride intracellular channel 5 isoform b 
CLIC5                 0.739   chloride intracellular channel 5 isoform a 
CLIC6                 0.733   chloride intracellular channel 6 
CLIC1                 0.641   chloride intracellular channel 1 
CLIC2                 0.624   chloride intracellular channel 2 
CLIC3                 0.421   chloride intracellular channel 3 
GSTO1                 0.035   glutathione-S-transferase omega 1 
TRPA1                 0.021   ankyrin-like protein 1 
GSTZ1                 0.012   glutathione transferase zeta 1 isoform 1 
GDAP1                 0.012   ganglioside-induced differentiation-associated prot...
GDAP1                 0.012   ganglioside-induced differentiation-associated prot...
CEP70                 0.010   centrosomal protein 70 kDa 
FRYL                  0.010   furry-like 
FOXO4                 0.008   forkhead box O4 
GSTO2                 0.006   glutathione S-transferase omega 2 
RAI14                 0.006   retinoic acid induced 14 isoform d 
RAI14                 0.006   retinoic acid induced 14 isoform c 
RAI14                 0.006   retinoic acid induced 14 isoform b 
RAI14                 0.006   retinoic acid induced 14 isoform a 
RAI14                 0.006   retinoic acid induced 14 isoform a 
RAI14                 0.006   retinoic acid induced 14 isoform a 
GOLGB1                0.006   golgi autoantigen, golgin subfamily b, macrogolgin ...
LEPR                  0.006   leptin receptor isoform 1 
KIAA1704              0.006   hypothetical protein LOC55425 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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