Guide to the Human Genome
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Name: CLIC2 Sequence: fasta or formatted (247aa) NCBI GI: 66346733
Description:

chloride intracellular channel 2

Referenced in:

Chloride Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         15           2
 C cysteine            2.0          5           1
 D aspartate           6.9         17           2
 E glutamate           8.9         22           2
 F phenylalanine       6.5         16           1
 G glycine             4.0         10           1
 H histidine           1.2          3           1
 I isoleucine          4.5         11           2
 K lysine              9.7         24           2
 L leucine            10.9         27           2
 M methionine          1.2          3           1
 N asparagine          5.3         13           1
 P proline             7.3         18           2
 Q glutamine           2.4          6           1
 R arginine            4.0         10           2
 S serine              4.9         12           1
 T threonine           5.3         13           2
 V valine              4.5         11           1
 W tryptophan          0.8          2           1
 Y tyrosine            3.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride intracellular channel 2 
CLIC5                 0.630   chloride intracellular channel 5 isoform b 
CLIC6                 0.630   chloride intracellular channel 6 
CLIC4                 0.628   chloride intracellular channel 4 
CLIC5                 0.626   chloride intracellular channel 5 isoform a 
CLIC1                 0.550   chloride intracellular channel 1 
CLIC3                 0.430   chloride intracellular channel 3 
GSTO1                 0.029   glutathione-S-transferase omega 1 
GDAP1                 0.012   ganglioside-induced differentiation-associated prot...
GDAP1                 0.012   ganglioside-induced differentiation-associated prot...
HELB                  0.012   helicase (DNA) B 
ALCAM                 0.010   activated leukocyte cell adhesion molecule 
GCLM                  0.010   glutamate-cysteine ligase regulatory protein 
CNGA3                 0.008   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.008   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
PXDN                  0.006   peroxidasin 
MAGED4B               0.006   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.006   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.006   melanoma antigen family D, 4B isoform 1 
MAGED4                0.006   melanoma antigen family D, 4 
BAT2D1                0.006   HBxAg transactivated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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