Guide to the Human Genome
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Name: PTPRO Sequence: fasta or formatted (377aa) NCBI GI: 13677216
Description:

receptor-type protein tyrosine phosphatase O isoform d precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1216aa] receptor-type protein tyrosine phosphatase O isoform a precursor
alt prot [405aa] receptor-type protein tyrosine phosphatase O isoform c precursor
alt mRNA [377aa] receptor-type protein tyrosine phosphatase O isoform d precursor
alt prot [405aa] receptor-type protein tyrosine phosphatase O isoform c precursor
alt prot [1188aa] receptor-type protein tyrosine phosphatase O isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         21           2
 C cysteine            2.1          8           1
 D aspartate           6.1         23           2
 E glutamate           6.4         24           3
 F phenylalanine       4.2         16           1
 G glycine             4.2         16           1
 H histidine           2.9         11           1
 I isoleucine          7.4         28           2
 K lysine              5.8         22           3
 L leucine             8.8         33           3
 M methionine          4.5         17           1
 N asparagine          5.0         19           1
 P proline             4.0         15           1
 Q glutamine           5.6         21           2
 R arginine            5.0         19           2
 S serine              5.3         20           1
 T threonine           4.5         17           1
 V valine              6.6         25           3
 W tryptophan          1.6          6           1
 Y tyrosine            4.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   receptor-type protein tyrosine phosphatase O isoform... 
PTPRO                 1.000   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 1.000   receptor-type protein tyrosine phosphatase O isoform ...
PTPRO                 0.980   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.980   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.980   receptor-type protein tyrosine phosphatase O isoform...
PTPRB                 0.372   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.372   protein tyrosine phosphatase, receptor type, B isof...
PTPRQ                 0.349   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRJ                 0.340   protein tyrosine phosphatase, receptor type, J isof...
PTPRH                 0.322   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.322   protein tyrosine phosphatase, receptor type, H isof...
PTPRF                 0.271   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.271   protein tyrosine phosphatase, receptor type, F isof...
PTPRD                 0.267   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.267   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.267   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.267   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.266   protein tyrosine phosphatase, receptor type, D isof...
PTPRS                 0.265   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.265   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.265   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.265   protein tyrosine phosphatase, receptor type, sigma ...
PTPRT                 0.263   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.263   protein tyrosine phosphatase, receptor type, T isof...
PTPRC                 0.261   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.261   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.261   protein tyrosine phosphatase, receptor type, C isofo...
PTPRM                 0.259   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.259   protein tyrosine phosphatase, receptor type, M isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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