Guide to the Human Genome
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Name: RCCD1 Sequence: fasta or formatted (376aa) NCBI GI: 63054860
Description:

RCC1 domain containing 1

Referenced in:

Ran and Rag

Other entries for this name:
alt mRNA [376aa] RCC1 domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         49           2
 C cysteine            1.9          7           1
 D aspartate           3.7         14           2
 E glutamate           8.5         32           2
 F phenylalanine       2.7         10           1
 G glycine            13.0         49           3
 H histidine           1.9          7           1
 I isoleucine          1.1          4           1
 K lysine              2.1          8           1
 L leucine            10.4         39           3
 M methionine          0.8          3           1
 N asparagine          1.3          5           1
 P proline             6.1         23           1
 Q glutamine           4.0         15           1
 R arginine            6.9         26           2
 S serine              5.9         22           1
 T threonine           4.3         16           2
 V valine              6.9         26           2
 W tryptophan          3.2         12           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RCC1 domain containing 1 
RCCD1                 1.000   RCC1 domain containing 1 
HERC2                 0.120   hect domain and RLD 2 
HERC5                 0.119   hect domain and RLD 5 
HERC3                 0.107   hect domain and RLD 3 
HERC6                 0.101   hect domain and RLD 6 
HERC4                 0.100   hect domain and RLD 4 isoform b 
HERC4                 0.100   hect domain and RLD 4 isoform a 
HERC1                 0.096   guanine nucleotide exchange factor p532 
RCBTB2                0.087   regulator of chromosome condensation and BTB domain c...
RCC2                  0.085   regulator of chromosome condensation 2 
RCC2                  0.085   regulator of chromosome condensation 2 
NEK9                  0.083   NIMA-related kinase 9 
NEK8                  0.072   NIMA-related kinase 8 
RPGR                  0.065   retinitis pigmentosa GTPase regulator isoform A [Homo...
RPGR                  0.065   retinitis pigmentosa GTPase regulator isoform C [Hom...
RCBTB1                0.063   regulator of chromosome condensation (RCC1) and BTB ...
RCC1                  0.060   regulator of chromosome condensation 1 isoform a [H...
RCC1                  0.059   regulator of chromosome condensation 1 isoform b [H...
RCC1                  0.059   regulator of chromosome condensation 1 isoform c [Hom...
SNHG3-RCC1            0.059   regulator of chromosome condensation 1 
SNHG3-RCC1            0.059   regulator of chromosome condensation 1 
SNHG3-RCC1            0.059   regulator of chromosome condensation 1 
SERGEF                0.056   deafness locus associated putative guanine nucleotide...
ALS2                  0.055   alsin isoform 1 
LOC100290629          0.053   PREDICTED: hypothetical protein XP_002347563 
LOC390561             0.053   PREDICTED: similar to hect domain and RLD 2 
MYCBP2                0.053   MYC binding protein 2 
ALS2                  0.052   alsin isoform 2 
WBSCR16               0.049   Williams-Beuren syndrome chromosome region 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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