Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5902004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902004 matrix metalloproteinase 23B precursor [Homo
sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902004 matrix metalloproteinase 23B precursor [Homo sapiens] 825 0.0
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 125 9e-29
gi|13236530 matrix metalloproteinase 28 isoform 1 preproprotein ... 111 1e-24
gi|112382270 matrix metalloproteinase 17 preproprotein [Homo sap... 110 3e-24
gi|4505221 matrix metalloproteinase 8 preproprotein [Homo sapiens] 108 8e-24
gi|225543094 matrix metalloproteinase 1 isoform 2 [Homo sapiens] 107 2e-23
gi|4505215 matrix metalloproteinase 1 isoform 1 preproprotein [H... 107 2e-23
gi|4505213 matrix metalloproteinase 19 isoform rasi-1 preproprot... 105 5e-23
gi|4505209 matrix metalloproteinase 13 preproprotein [Homo sapiens] 101 1e-21
gi|149999365 matrix metalloproteinase 16 isoform 2 preproprotein... 101 1e-21
gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein ... 101 1e-21
gi|73808266 matrix metalloproteinase 26 preproprotein [Homo sapi... 98 1e-20
gi|4505205 matrix metalloproteinase 10 preproprotein [Homo sapiens] 93 5e-19
gi|45359865 matrix metalloproteinase 20 preproprotein [Homo sapi... 92 6e-19
gi|11968059 matrix metalloproteinase 25 preproprotein [Homo sapi... 92 6e-19
gi|4505217 matrix metalloproteinase 3 preproprotein [Homo sapiens] 92 1e-18
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens] 92 1e-18
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 91 2e-18
gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens] 89 9e-18
gi|73808268 matrix metalloproteinase 27 [Homo sapiens] 87 3e-17
gi|4826834 matrix metalloproteinase 14 preproprotein [Homo sapiens] 84 2e-16
gi|22218341 matrix metalloproteinase 21 preproprotein [Homo sapi... 81 2e-15
gi|73858572 matrix metalloproteinase 12 preproprotein [Homo sapi... 80 3e-15
gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens] 74 3e-13
gi|11342666 matrix metalloproteinase 2 isoform a preproprotein [... 74 3e-13
gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens] 70 2e-12
gi|239750339 PREDICTED: hypothetical protein XP_002347374 [Homo ... 51 2e-06
gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens] 38 0.014
gi|15147240 brother of CDO [Homo sapiens] 35 0.15
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 34 0.26
>gi|5902004 matrix metalloproteinase 23B precursor [Homo sapiens]
Length = 390
Score = 825 bits (2130), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MGRGARVPSEAPGAGVERRWLGAALVALCLLPALVLLARLGAPAVPAWSAAQGDVAALGL 60
MGRGARVPSEAPGAGVERRWLGAALVALCLLPALVLLARLGAPAVPAWSAAQGDVAALGL
Sbjct: 1 MGRGARVPSEAPGAGVERRWLGAALVALCLLPALVLLARLGAPAVPAWSAAQGDVAALGL 60
Query: 61 SAVPPTRVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRM 120
SAVPPTRVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRM
Sbjct: 61 SAVPPTRVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRM 120
Query: 121 WSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGGIH 180
WSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGGIH
Sbjct: 121 WSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGGIH 180
Query: 181 FDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA 240
FDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA
Sbjct: 181 FDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA 240
Query: 241 LSQDELWGLHRLYGCLDRLFVCASWARRGFCDARRRLMKRLCPSSCDFCYEFPFPTVATT 300
LSQDELWGLHRLYGCLDRLFVCASWARRGFCDARRRLMKRLCPSSCDFCYEFPFPTVATT
Sbjct: 241 LSQDELWGLHRLYGCLDRLFVCASWARRGFCDARRRLMKRLCPSSCDFCYEFPFPTVATT 300
Query: 301 PPPPRTKTRLVPEGRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYPGYLALGEAHLSIIA 360
PPPPRTKTRLVPEGRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYPGYLALGEAHLSIIA
Sbjct: 301 PPPPRTKTRLVPEGRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYPGYLALGEAHLSIIA 360
Query: 361 NAVNEGTYTCVVRRQQRVLTTYSWRVRVRG 390
NAVNEGTYTCVVRRQQRVLTTYSWRVRVRG
Sbjct: 361 NAVNEGTYTCVVRRQQRVLTTYSWRVRVRG 390
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 125 bits (313), Expect = 9e-29
Identities = 87/219 (39%), Positives = 114/219 (52%), Gaps = 23/219 (10%)
Query: 43 PAVPAWSAAQGDVAALGLSAVPPT-RVPGP---LAPRRRRYTLTPARLRWDHFNLTYRIL 98
P+ PA + A + S PP VP P L+ R R+ + RW+ +LTYRIL
Sbjct: 56 PSSPAPAPATQEAPRPASSLRPPRCGVPDPSDGLSARNRQKRFVLSGGRWEKTDLTYRIL 115
Query: 99 SFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALH 158
FP L+ + R+ +A A ++WSDV+P +F EV E +D+ I F H D L
Sbjct: 116 RFPWQLVQ-EQVRQTMAEALKVWSDVTPLTFTEVH-EGRADIMIDFARYWHGDDLP---- 169
Query: 159 HCFDGPTGELAHAFFPP---HGGIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGH 215
FDGP G LAHAFFP G +HFD E W +G + TDL+ VAAHE GH
Sbjct: 170 --FDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDDQG--------TDLLQVAAHEFGH 219
Query: 216 ALGLMHSQHGRALMHLNATLRGWKALSQDELWGLHRLYG 254
LGL H+ +ALM T R +LS D+ G+ LYG
Sbjct: 220 VLGLQHTTAAKALMSAFYTFRYPLSLSPDDCRGVQHLYG 258
>gi|13236530 matrix metalloproteinase 28 isoform 1 preproprotein
[Homo sapiens]
Length = 520
Score = 111 bits (277), Expect = 1e-24
Identities = 73/180 (40%), Positives = 98/180 (54%), Gaps = 14/180 (7%)
Query: 76 RRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPE 135
RR+ +W +L+YR++++P +L P R A+ AAF++WS+VS F E
Sbjct: 118 RRKKRFAKQGNKWYKQHLSYRLVNWPEHLPEPA-VRGAVRAAFQLWSNVSALEFWEAPAT 176
Query: 136 QPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYS 195
P+D+R+ F+ +H D L +A FDGP G LAHAF P G HFD E W L S
Sbjct: 177 GPADIRLTFFQGDHNDGLGNA----FDGPGGALAHAFLPRRGEAHFDQDERWSL-----S 227
Query: 196 WKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA-LSQDELWGLHRLYG 254
++G +L V AHEIGH LGL HS RALM G A LS D++ + LYG
Sbjct: 228 RRRG---RNLFVVLAHEIGHTLGLTHSPAPRALMAPYYKRLGRDALLSWDDVLAVQSLYG 284
>gi|112382270 matrix metalloproteinase 17 preproprotein [Homo
sapiens]
Length = 603
Score = 110 bits (274), Expect = 3e-24
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 19/182 (10%)
Query: 54 DVAALGLSAVPPTRVPG-PLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRR 112
D A L L P +P P+ + RR PA +W+ NL++R+ +FPR+ +T R
Sbjct: 98 DEATLALMKTPRCSLPDLPVLTQARRRRQAPAPTKWNKRNLSWRVRTFPRDSPLGHDTVR 157
Query: 113 ALA-AAFRMWSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHA 171
AL A ++WSD++P +F EVA +D++I F +H D + FDGP G +AHA
Sbjct: 158 ALMYYALKVWSDIAPLNFHEVA-GSAADIQIDFSKADHND------GYPFDGPGGTVAHA 210
Query: 172 FFPPH----GGIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRA 227
FFP H G HFDD E W R S G+ DL VA HE GHA+GL H +
Sbjct: 211 FFPGHHHTAGDTHFDDDEAWTF---RSSDAHGM---DLFAVAVHEFGHAIGLSHVAAAHS 264
Query: 228 LM 229
+M
Sbjct: 265 IM 266
>gi|4505221 matrix metalloproteinase 8 preproprotein [Homo sapiens]
Length = 467
Score = 108 bits (270), Expect = 8e-24
Identities = 70/181 (38%), Positives = 92/181 (50%), Gaps = 22/181 (12%)
Query: 79 YTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPS 138
+ LTP +W+ NLTYRI ++ L S E RA+ AF +WS SP F ++ + +
Sbjct: 99 FMLTPGNPKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-A 156
Query: 139 DLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVLGPTRYS 195
D+ I FY +H D + FDGP G LAHAF P G HFD E W Y+
Sbjct: 157 DINIAFYQRDHGD------NSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYN 210
Query: 196 WKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWK--ALSQDELWGLHRLY 253
L VAAHE GH+LGL HS ALM+ N R +L QD++ G+ +Y
Sbjct: 211 ---------LFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIY 261
Query: 254 G 254
G
Sbjct: 262 G 262
>gi|225543094 matrix metalloproteinase 1 isoform 2 [Homo sapiens]
Length = 403
Score = 107 bits (267), Expect = 2e-23
Identities = 70/185 (37%), Positives = 101/185 (54%), Gaps = 22/185 (11%)
Query: 74 PRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPR-ETRRALAAAFRMWSDVSPFSFREV 132
P ++ LT RW+ +LTYRI ++ +L PR + A+ AF++WS+V+P +F +V
Sbjct: 29 PDVAQFVLTEGNPRWEQTHLTYRIENYTPDL--PRADVDHAIEKAFQLWSNVTPLTFTKV 86
Query: 133 APEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVL 189
+ Q +D+ I F +H D + FDGP G LAHAF P G HFD+ E W
Sbjct: 87 SEGQ-ADIMISFVRGDHRD------NSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTN 139
Query: 190 GPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKALSQDELWGL 249
Y+ L VAAHE+GH+LGL HS ALM+ + T G L+QD++ G+
Sbjct: 140 NFREYN---------LHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGI 190
Query: 250 HRLYG 254
+YG
Sbjct: 191 QAIYG 195
>gi|4505215 matrix metalloproteinase 1 isoform 1 preproprotein [Homo
sapiens]
Length = 469
Score = 107 bits (267), Expect = 2e-23
Identities = 70/185 (37%), Positives = 101/185 (54%), Gaps = 22/185 (11%)
Query: 74 PRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPR-ETRRALAAAFRMWSDVSPFSFREV 132
P ++ LT RW+ +LTYRI ++ +L PR + A+ AF++WS+V+P +F +V
Sbjct: 95 PDVAQFVLTEGNPRWEQTHLTYRIENYTPDL--PRADVDHAIEKAFQLWSNVTPLTFTKV 152
Query: 133 APEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVL 189
+ Q +D+ I F +H D + FDGP G LAHAF P G HFD+ E W
Sbjct: 153 SEGQ-ADIMISFVRGDHRD------NSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTN 205
Query: 190 GPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKALSQDELWGL 249
Y+ L VAAHE+GH+LGL HS ALM+ + T G L+QD++ G+
Sbjct: 206 NFREYN---------LHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGI 256
Query: 250 HRLYG 254
+YG
Sbjct: 257 QAIYG 261
>gi|4505213 matrix metalloproteinase 19 isoform rasi-1 preproprotein
[Homo sapiens]
Length = 508
Score = 105 bits (263), Expect = 5e-23
Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 87 RWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYP 146
RW +LT+RIL+ P + L P R AL AF+ WS+V+P +F+EV +D+R+ F+
Sbjct: 103 RWRKKHLTFRILNLP-STLPPHTARAALRQAFQDWSNVAPLTFQEVQAGA-ADIRLSFHG 160
Query: 147 INHTDCLVSALHHCFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYSWKKGVWLTDLV 206
+ C + FDGP LAHA P G +HFD+ E+W G R GV +L
Sbjct: 161 RQSSYC-----SNTFDGPGRVLAHADIPELGSVHFDEDEFWTEGTYR-----GV---NLR 207
Query: 207 HVAAHEIGHALGLMHSQHGRALM-HLNATLRGWKALSQDELWGLHRLYG 254
+AAHE+GHALGL HS++ +ALM + R L D++ G+ LYG
Sbjct: 208 IIAAHEVGHALGLGHSRYSQALMAPVYEGYRPHFKLHPDDVAGIQALYG 256
>gi|4505209 matrix metalloproteinase 13 preproprotein [Homo sapiens]
Length = 471
Score = 101 bits (252), Expect = 1e-21
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 22/181 (12%)
Query: 79 YTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPS 138
Y + P L+W NLTYRI+++ ++ + E +A AF++WSDV+P +F + + +
Sbjct: 104 YNVFPRTLKWSKMNLTYRIVNYTPDM-THSEVEKAFKKAFKVWSDVTPLNFTRLH-DGIA 161
Query: 139 DLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFP-PH--GGIHFDDSEYWVLGPTRYS 195
D+ I F H D + FDGP+G LAHAF P P+ G HFDD E W Y+
Sbjct: 162 DIMISFGIKEHGD------FYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYN 215
Query: 196 WKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWK--ALSQDELWGLHRLY 253
L VAAHE GH+LGL HS+ ALM T G L D++ G+ LY
Sbjct: 216 ---------LFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLY 266
Query: 254 G 254
G
Sbjct: 267 G 267
>gi|149999365 matrix metalloproteinase 16 isoform 2 preproprotein
[Homo sapiens]
Length = 457
Score = 101 bits (251), Expect = 1e-21
Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 75 RRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAP 134
RR+RY LT + W H ++TY I + + P ETR+A+ AF +W +V+P +F EV
Sbjct: 116 RRKRYALTGQK--WQHKHITYSIKNVTPKVGDP-ETRKAIRRAFDVWQNVTPLTFEEVPY 172
Query: 135 EQPSDLRIGFYPINHTDCLVSALH---HCFDGPTGELAHAFFPPHG---GIHFDDSEYWV 188
S+L G ++ T S H FDG G LAHA+FP G HFD E W
Sbjct: 173 ---SELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWT 229
Query: 189 LGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALM---HLNATLRGWKALSQDE 245
LG + DL VA HE+GHALGL HS A+M + +K L D+
Sbjct: 230 LGNPNHDGN------DLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFK-LPNDD 282
Query: 246 LWGLHRLYGCLDRL 259
L G+ ++YG D++
Sbjct: 283 LQGIQKIYGPPDKI 296
>gi|13027802 matrix metalloproteinase 16 isoform 1 preproprotein
[Homo sapiens]
Length = 607
Score = 101 bits (251), Expect = 1e-21
Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 75 RRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAP 134
RR+RY LT + W H ++TY I + + P ETR+A+ AF +W +V+P +F EV
Sbjct: 116 RRKRYALTGQK--WQHKHITYSIKNVTPKVGDP-ETRKAIRRAFDVWQNVTPLTFEEVPY 172
Query: 135 EQPSDLRIGFYPINHTDCLVSALH---HCFDGPTGELAHAFFPPHG---GIHFDDSEYWV 188
S+L G ++ T S H FDG G LAHA+FP G HFD E W
Sbjct: 173 ---SELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWT 229
Query: 189 LGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALM---HLNATLRGWKALSQDE 245
LG + DL VA HE+GHALGL HS A+M + +K L D+
Sbjct: 230 LGNPNHDGN------DLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFK-LPNDD 282
Query: 246 LWGLHRLYGCLDRL 259
L G+ ++YG D++
Sbjct: 283 LQGIQKIYGPPDKI 296
>gi|73808266 matrix metalloproteinase 26 preproprotein [Homo
sapiens]
Length = 261
Score = 98.2 bits (243), Expect = 1e-20
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 80 TLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSD 139
+++P R +W+ LTYRI+++P ++ P + ++ A +WS+V+P F++V +D
Sbjct: 91 SISPGRCKWNKHTLTYRIINYPHDM-KPSAVKDSIYNAVSIWSNVTPLIFQQVQ-NGDAD 148
Query: 140 LRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHGG---IHFDDSEYWVLGPTRYSW 196
+++ F+ H D FDGP G L HAF P G +HFD +E+W T Y+
Sbjct: 149 IKVSFWQWAHEDGWP------FDGPGGILGHAFLPNSGNPGVVHFDKNEHWSASDTGYN- 201
Query: 197 KKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA--LSQDELWGLHRLYG 254
L VA HEIGH+LGL HS + ++M+ + LS D++ + LYG
Sbjct: 202 --------LFLVATHEIGHSLGLQHSGNQSSIMYPTYWYHDPRTFQLSADDIQRIQHLYG 253
>gi|4505205 matrix metalloproteinase 10 preproprotein [Homo sapiens]
Length = 476
Score = 92.8 bits (229), Expect = 5e-19
Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 67 RVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRET-RRALAAAFRMWSDVS 125
R P P ++ P +W +LTYRI+++ +L PR+ A+ A ++W +V+
Sbjct: 87 RKPRCGVPDVGHFSSFPGMPKWRKTHLTYRIVNYTPDL--PRDAVDSAIEKALKVWEEVT 144
Query: 126 PFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPP---HGGIHFD 182
P +F + E +D+ I F H D + FDGP LAHA+ P +G IHFD
Sbjct: 145 PLTFSRLY-EGEADIMISFAVKEHGD------FYSFDGPGHSLAHAYPPGPGLYGDIHFD 197
Query: 183 DSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALM---HLNATLRGWK 239
D E W + T+L VAAHE+GH+LGL HS + ALM + + T
Sbjct: 198 DDEKWTEDASG---------TNLFLVAAHELGHSLGLFHSANTEALMYPLYNSFTELAQF 248
Query: 240 ALSQDELWGLHRLYG 254
LSQD++ G+ LYG
Sbjct: 249 RLSQDDVNGIQSLYG 263
>gi|45359865 matrix metalloproteinase 20 preproprotein [Homo
sapiens]
Length = 483
Score = 92.4 bits (228), Expect = 6e-19
Identities = 65/186 (34%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 74 PRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVA 133
P Y L P +W LTYRI + ++ S E +A+ A + WS P SF +
Sbjct: 103 PDVANYRLFPGEPKWKKNTLTYRISKYTPSMSSV-EVDKAVEMALQAWSSAVPLSFVRIN 161
Query: 134 PEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVLG 190
+ +D+ I F +H D + FDGP G LAHAF P G HFD++E W +G
Sbjct: 162 SGE-ADIMISFENGDHGDS------YPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMG 214
Query: 191 PTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWKA--LSQDELWG 248
++ L VAAHE GHALGL HS ALM+ + L +D++ G
Sbjct: 215 TNGFN---------LFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKG 265
Query: 249 LHRLYG 254
+ LYG
Sbjct: 266 IQALYG 271
>gi|11968059 matrix metalloproteinase 25 preproprotein [Homo
sapiens]
Length = 562
Score = 92.4 bits (228), Expect = 6e-19
Identities = 78/196 (39%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 72 LAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAA-AFRMWSDVSPFSFR 130
L RRRRY L+ + W LT+R+ SFP++ +ET R L + A W S +F
Sbjct: 101 LVRRRRRYALSGSV--WKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFH 158
Query: 131 EV-APE-QPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPH----GGIHFDDS 184
EV +P+ Q D+ I F H D + FDG G LAHAFFP G HFDD
Sbjct: 159 EVDSPQGQEPDILIDFARAFHQDS------YPFDGLGGTLAHAFFPGEHPISGDTHFDDE 212
Query: 185 EYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRG------W 238
E W G K G TDL VA HE GHALGL HS ++M +G
Sbjct: 213 ETWTFGS-----KDGEG-TDLFAVAVHEFGHALGLGHSSAPNSIM--RPFYQGPVGDPDK 264
Query: 239 KALSQDELWGLHRLYG 254
LSQD+ GL +LYG
Sbjct: 265 YRLSQDDRDGLQQLYG 280
>gi|4505217 matrix metalloproteinase 3 preproprotein [Homo sapiens]
Length = 477
Score = 91.7 bits (226), Expect = 1e-18
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 27/180 (15%)
Query: 83 PARLRWDHFNLTYRILSFPRNLLSPRET-RRALAAAFRMWSDVSPFSFREVAPEQPSDLR 141
P +W +LTYRI+++ +L P++ A+ A ++W +V+P +F + E +D+
Sbjct: 104 PGIPKWRKTHLTYRIVNYTPDL--PKDAVDSAVEKALKVWEEVTPLTFSRLY-EGEADIM 160
Query: 142 IGFYPINHTDCLVSALHHCFDGPTGELAHAFFPP---HGGIHFDDSEYWVLGPTRYSWKK 198
I F H D + FDGP LAHA+ P +G HFDD E W T
Sbjct: 161 ISFAVREHGD------FYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTG----- 209
Query: 199 GVWLTDLVHVAAHEIGHALGLMHSQHGRALM----HLNATLRGWKALSQDELWGLHRLYG 254
T+L VAAHEIGH+LGL HS + ALM H L ++ LSQD++ G+ LYG
Sbjct: 210 ----TNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFR-LSQDDINGIQSLYG 264
>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
Length = 645
Score = 91.7 bits (226), Expect = 1e-18
Identities = 68/192 (35%), Positives = 94/192 (48%), Gaps = 28/192 (14%)
Query: 75 RRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREV-- 132
R +RY LT + R H +TY I ++ + +TR+A+ AF +W V+P +F EV
Sbjct: 152 RNKRYALTGQKWRQKH--ITYSIHNYTPKV-GELDTRKAIRQAFDVWQKVTPLTFEEVPY 208
Query: 133 ----APEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSE 185
+ + +D+ I F H D FDG G LAHA+FP G HFD E
Sbjct: 209 HEIKSDRKEADIMIFFASGFHGDSSP------FDGEGGFLAHAYFPGPGIGGDTHFDSDE 262
Query: 186 YWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALM---HLNATLRGWKALS 242
W LG + DL VA HE+GHALGL HS A+M + +K L
Sbjct: 263 PWTLGNANHDGN------DLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFK-LP 315
Query: 243 QDELWGLHRLYG 254
QD+L G+ ++YG
Sbjct: 316 QDDLQGIQKIYG 327
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 90.5 bits (223), Expect = 2e-18
Identities = 71/206 (34%), Positives = 97/206 (47%), Gaps = 33/206 (16%)
Query: 67 RVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSP 126
RV L RR+RY LT + W++ +LT+ I ++ L + A+ AFR+W +P
Sbjct: 120 RVKANLRRRRKRYALTGRK--WNNHHLTFSIQNYTEKL-GWYHSMEAVRRAFRVWEQATP 176
Query: 127 FSFREVAPE-------QPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG-- 177
F+EV E + +D+ + F H D FDG G LAHA+FP G
Sbjct: 177 LVFQEVPYEDIRLRRQKEADIMVLFASGFHGDSSP------FDGTGGFLAHAYFPGPGLG 230
Query: 178 -GIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLR 236
HFD E W T +L VA HE+GHALGL HS + A+M A
Sbjct: 231 GDTHFDADEPWTFSSTDLHGN------NLFLVAVHELGHALGLEHSSNPNAIM---APFY 281
Query: 237 GWK-----ALSQDELWGLHRLYGCLD 257
WK L +D+L G+ +LYG D
Sbjct: 282 QWKDVDNFKLPEDDLRGIQQLYGTPD 307
>gi|4505219 matrix metalloproteinase 7 preproprotein [Homo sapiens]
Length = 267
Score = 88.6 bits (218), Expect = 9e-18
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 74 PRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRET-RRALAAAFRMWSDVSPFSFREV 132
P Y+L P +W +TYRI+S+ R+L P T R ++ A MW P FR+V
Sbjct: 90 PDVAEYSLFPNSPKWTSKVVTYRIVSYTRDL--PHITVDRLVSKALNMWGKEIPLHFRKV 147
Query: 133 APEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVL 189
+D+ IGF H D + FDGP LAHAF P G HFD+ E W
Sbjct: 148 V-WGTADIMIGFARGAHGDS------YPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTD 200
Query: 190 GPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHL---NATLRGWKALSQDEL 246
G + G+ + ++ A HE+GH+LG+ HS A+M+ N + +K LSQD++
Sbjct: 201 GSSL-----GI---NFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFK-LSQDDI 251
Query: 247 WGLHRLYG 254
G+ +LYG
Sbjct: 252 KGIQKLYG 259
>gi|73808268 matrix metalloproteinase 27 [Homo sapiens]
Length = 513
Score = 86.7 bits (213), Expect = 3e-17
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 88 WDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYPI 147
W +NLTYRI+++ ++ + A+ +WS V+P F +++ + +D+ I F
Sbjct: 106 WRKYNLTYRIINYTPDM-ARAAVDEAIQEGLEVWSKVTPLKFTKIS-KGIADIMIAFRTR 163
Query: 148 NHTDCLVSALHHCFDGPTGELAHAFFPPHGGI----HFDDSEYWVLGPTRYSWKKGVWLT 203
H C FDGP G L HAF PP G+ HFD+ E W K G
Sbjct: 164 VHGRC-----PRYFDGPLGVLGHAF-PPGPGLGGDTHFDEDENWT--------KDGAGF- 208
Query: 204 DLVHVAAHEIGHALGLMHSQHGRALMHLN-ATLRGWK-ALSQDELWGLHRLYGCLDR 258
+L VAAHE GHALGL HS ALM N +L K LSQD++ G+ +YG L +
Sbjct: 209 NLFLVAAHEFGHALGLSHSNDQTALMFPNYVSLDPRKYPLSQDDINGIQSIYGGLPK 265
>gi|4826834 matrix metalloproteinase 14 preproprotein [Homo sapiens]
Length = 582
Score = 84.3 bits (207), Expect = 2e-16
Identities = 68/195 (34%), Positives = 92/195 (47%), Gaps = 33/195 (16%)
Query: 75 RRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREV-- 132
RR+RY + L+W H +T+ I ++ + T A+ AFR+W +P FREV
Sbjct: 108 RRKRYAIQG--LKWQHNEITFCIQNYTPKV-GEYATYEAIRKAFRVWESATPLRFREVPY 164
Query: 133 -----APEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFP-PH--GGIHFDDS 184
E+ +D+ I F H D FDG G LAHA+FP P+ G HFD +
Sbjct: 165 AYIREGHEKQADIMIFFAEGFHGDSTP------FDGEGGFLAHAYFPGPNIGGDTHFDSA 218
Query: 185 EYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGWK----- 239
E W + R G D+ VA HE+GHALGL HS A+M A W
Sbjct: 219 EPWTV---RNEDLNG---NDIFLVAVHELGHALGLEHSSDPSAIM---APFYQWMDTENF 269
Query: 240 ALSQDELWGLHRLYG 254
L D+ G+ +LYG
Sbjct: 270 VLPDDDRRGIQQLYG 284
>gi|22218341 matrix metalloproteinase 21 preproprotein [Homo
sapiens]
Length = 569
Score = 80.9 bits (198), Expect = 2e-15
Identities = 74/231 (32%), Positives = 102/231 (44%), Gaps = 40/231 (17%)
Query: 64 PPTRVPGPLAP-------RRRRYTLTPARLRWD--------------HFNLTYRILSFP- 101
PP+ P P P R R L+ +R W L++R+L
Sbjct: 126 PPSAPPSPPGPPPRARSRRSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRLLGEAL 185
Query: 102 RNLLSPRETRRALAAAFRMWSDVSPFSFRE--VAPEQPSDLRIGFYPINHTDCLVSALHH 159
+ LS + RR +A AFRMWS+V+P FRE AP D+++GF H C
Sbjct: 186 SSQLSVADQRRIVALAFRMWSEVTPLDFREDLAAPGAAVDIKLGFGRGRHLGC-----PR 240
Query: 160 CFDGPTGELAHAFFPPHGGIHFDDSEYWVLGPTRYSWKKGVWLTDLVHVAAHEIGHALGL 219
FDG E AHA+ G IHFDD E++ T + G+ L+ VA HEIGH LGL
Sbjct: 241 AFDGSGQEFAHAW--RLGDIHFDDDEHF----TPPTSDTGI---SLLKVAVHEIGHVLGL 291
Query: 220 MHSQHGRALMHLN-ATLRGWKALSQDELWGLHRLYGCLDRLFVCA-SWARR 268
H+ ++M N L + + +LYG + F A W R+
Sbjct: 292 PHTYRTGSIMQPNYIPQEPAFELDWSDRKAIQKLYGSCEGSFDTAFDWIRK 342
>gi|73858572 matrix metalloproteinase 12 preproprotein [Homo
sapiens]
Length = 470
Score = 80.1 bits (196), Expect = 3e-15
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 24/173 (13%)
Query: 88 WDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYPI 147
W +TYRI ++ ++ + + A+ AF++WS+V+P F ++ +D+ + F
Sbjct: 109 WRKHYITYRINNYTPDM-NREDVDYAIRKAFQVWSNVTPLKFSKINTGM-ADILVVFARG 166
Query: 148 NHTDCLVSALHHCFDGPTGELAHAFFPPHG---GIHFDDSEYWVLGPTRYSWKKGVWLTD 204
H D H FDG G LAHAF P G HFD+ E+W T +S ++LT
Sbjct: 167 AHGD------FHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFW----TTHSGGTNLFLT- 215
Query: 205 LVHVAAHEIGHALGLMHSQHGRALM---HLNATLRGWKALSQDELWGLHRLYG 254
A HEIGH+LGL HS +A+M + + ++ LS D++ G+ LYG
Sbjct: 216 ----AVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFR-LSADDIRGIQSLYG 263
>gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens]
Length = 610
Score = 73.6 bits (179), Expect = 3e-13
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 58 LGLSAVPPTRVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAA 117
L + + R P P Y P + +WD +TYRI+ + +L P A A A
Sbjct: 39 LDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDL-DPETVDDAFARA 97
Query: 118 FRMWSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFP--- 174
F++WSDV+P F + + +D+ I F H D + FDG G LAHAF P
Sbjct: 98 FQVWSDVTPLRFSRI-HDGEADIMINFGRWEHGD------GYPFDGKDGLLAHAFAPGTG 150
Query: 175 PHGGIHFDDSEYWVLG 190
G HFDD E W LG
Sbjct: 151 VGGDSHFDDDELWTLG 166
Score = 47.4 bits (111), Expect = 2e-05
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 180 HFDDSEYWVLGPTR-YSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGW 238
++DD W P + YS L VAAHE GHA+GL HSQ ALM T
Sbjct: 330 NYDDDRKWGFCPDQGYS---------LFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKN 380
Query: 239 KALSQDELWGLHRLYG 254
LSQD++ G+ LYG
Sbjct: 381 FRLSQDDIKGIQELYG 396
>gi|11342666 matrix metalloproteinase 2 isoform a preproprotein
[Homo sapiens]
Length = 660
Score = 73.6 bits (179), Expect = 3e-13
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 58 LGLSAVPPTRVPGPLAPRRRRYTLTPARLRWDHFNLTYRILSFPRNLLSPRETRRALAAA 117
L + + R P P Y P + +WD +TYRI+ + +L P A A A
Sbjct: 89 LDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDL-DPETVDDAFARA 147
Query: 118 FRMWSDVSPFSFREVAPEQPSDLRIGFYPINHTDCLVSALHHCFDGPTGELAHAFFP--- 174
F++WSDV+P F + + +D+ I F H D + FDG G LAHAF P
Sbjct: 148 FQVWSDVTPLRFSRI-HDGEADIMINFGRWEHGD------GYPFDGKDGLLAHAFAPGTG 200
Query: 175 PHGGIHFDDSEYWVLG 190
G HFDD E W LG
Sbjct: 201 VGGDSHFDDDELWTLG 216
Score = 47.4 bits (111), Expect = 2e-05
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 180 HFDDSEYWVLGPTR-YSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGW 238
++DD W P + YS L VAAHE GHA+GL HSQ ALM T
Sbjct: 380 NYDDDRKWGFCPDQGYS---------LFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKN 430
Query: 239 KALSQDELWGLHRLYG 254
LSQD++ G+ LYG
Sbjct: 431 FRLSQDDIKGIQELYG 446
>gi|74272287 matrix metalloproteinase 9 preproprotein [Homo sapiens]
Length = 707
Score = 70.5 bits (171), Expect = 2e-12
Identities = 63/174 (36%), Positives = 83/174 (47%), Gaps = 31/174 (17%)
Query: 32 PALVLLAR-LGAPAVPAWSAAQGDVAALGLSAVPPTRVPGPLAPRRRRYTLTPARLRWDH 90
PAL+LL + L P G++ + L A+ R P P R+ L+W H
Sbjct: 69 PALLLLQKQLSLPET-------GELDSATLKAM---RTPRCGVPDLGRFQTFEGDLKWHH 118
Query: 91 FNLTYRILSFPRNLLSPRET-RRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYPINH 149
N+TY I ++ +L PR A A AF +WS V+P +F V + +D+ I F H
Sbjct: 119 HNITYWIQNYSEDL--PRAVIDDAFARAFALWSAVTPLTFTRVY-SRDADIVIQFGVAEH 175
Query: 150 TDCLVSALHHCFDGPTGELAHAFFPPHGGI----HFDDSEYWVLG-----PTRY 194
D + FDG G LAHA FPP GI HFDD E W LG PTR+
Sbjct: 176 GD------GYPFDGKDGLLAHA-FPPGPGIQGDAHFDDDELWSLGKGVVVPTRF 222
Score = 42.4 bits (98), Expect = 7e-04
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 180 HFDDSEYWVLGPTR-YSWKKGVWLTDLVHVAAHEIGHALGLMHSQHGRALMHLNATLRGW 238
+FD + W P + YS L VAAHE GHALGL HS ALM+
Sbjct: 378 NFDSDKKWGFCPDQGYS---------LFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEG 428
Query: 239 KALSQDELWGLHRLYG 254
L +D++ G+ LYG
Sbjct: 429 PPLHKDDVNGIRHLYG 444
>gi|239750339 PREDICTED: hypothetical protein XP_002347374 [Homo
sapiens]
Length = 183
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 87 RWDHFNLTYRILSFPRNLLSPRETRRALAAAFRMWSDVSPFSFREVAPEQPSDLRIGFYP 146
RW +LT+RIL+ P + L P R AL AF+ WS+V+P +F+EV +D+R+ F+
Sbjct: 103 RWRKKHLTFRILNLP-STLPPHTARAALRQAFQDWSNVAPLTFQEV-QAGAADIRLSFHG 160
Query: 147 INHTDCLVSALHHCFDGP 164
+ C + FDGP
Sbjct: 161 RQSSYC-----SNTFDGP 173
>gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens]
Length = 1007
Score = 38.1 bits (87), Expect = 0.014
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 304 PRTKTRLVPEGRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYPGYLALGEAHLSIIANAV 363
PR +V G T CG H + V W+KD +PL + G + L A
Sbjct: 143 PRDMVAVV--GEQFTLECGPPWGHPEPTVSWWKDGKPLALQPGRHTVSGGSLLMARAEKS 200
Query: 364 NEGTYTCV 371
+EGTY CV
Sbjct: 201 DEGTYMCV 208
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 34.7 bits (78), Expect = 0.15
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 311 VPEGRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYPGYLALGEAHLSII-ANAVNEGTYT 369
V EG C H K +V + QE LE S YL + +L I+ A+ +EG Y
Sbjct: 140 VDEGNTAVIACHLPESHPKAQVRYSVKQEWLEASRGNYLIMPSGNLQIVNASQEDEGMYK 199
Query: 370 CVVRR--QQRVLTT-YSWRVRVR 389
C Q V T+ S R+RVR
Sbjct: 200 CAAYNPVTQEVKTSGSSDRLRVR 222
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 33.9 bits (76), Expect = 0.26
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 314 GRNVTFRCGQKILHKKGKVYWYKDQEPLEFSYP--GYLALGEAHLSIIANAVNEGTYTCV 371
GR+ C + I + + WYK+ L F++ + G LS + V+EG YTC
Sbjct: 518 GRDTYIHC-RVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCN 576
Query: 372 VRRQQRVLTTYSWRVRVR 389
V Q ++ T+ S V V+
Sbjct: 577 VLVQPQLSTSQSVHVTVK 594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,708,803
Number of Sequences: 37866
Number of extensions: 978171
Number of successful extensions: 3794
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3637
Number of HSP's gapped (non-prelim): 72
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.