Guide to the Human Genome
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Name: MMP25 Sequence: fasta or formatted (562aa) NCBI GI: 11968059
Description:

matrix metalloproteinase 25 preproprotein

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         48           3
 C cysteine            1.1          6           1
 D aspartate           6.2         35           2
 E glutamate           4.1         23           2
 F phenylalanine       4.8         27           3
 G glycine             8.5         48           2
 H histidine           2.3         13           1
 I isoleucine          2.0         11           1
 K lysine              3.0         17           2
 L leucine            10.0         56           6
 M methionine          1.6          9           1
 N asparagine          1.4          8           1
 P proline            12.1         68           3
 Q glutamine           5.2         29           2
 R arginine            8.2         46           5
 S serine              6.2         35           2
 T threonine           4.3         24           1
 V valine              5.0         28           2
 W tryptophan          2.7         15           1
 Y tyrosine            2.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrix metalloproteinase 25 preproprotein 
MMP17                 0.418   matrix metalloproteinase 17 preproprotein 
MMP15                 0.313   matrix metalloproteinase 15 preproprotein 
MMP24                 0.299   matrix metalloproteinase 24 preproprotein 
MMP14                 0.297   matrix metalloproteinase 14 preproprotein 
MMP16                 0.297   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP11                 0.239   matrix metalloproteinase 11 preproprotein 
MMP16                 0.213   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP3                  0.192   matrix metalloproteinase 3 preproprotein 
MMP19                 0.186   matrix metalloproteinase 19 isoform rasi-1 preproprot...
MMP10                 0.184   matrix metalloproteinase 10 preproprotein 
MMP20                 0.182   matrix metalloproteinase 20 preproprotein 
MMP8                  0.179   matrix metalloproteinase 8 preproprotein 
MMP12                 0.174   matrix metalloproteinase 12 preproprotein 
MMP13                 0.172   matrix metalloproteinase 13 preproprotein 
MMP1                  0.157   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP28                 0.157   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP27                 0.156   matrix metalloproteinase 27 
MMP1                  0.151   matrix metalloproteinase 1 isoform 2 
MMP2                  0.140   matrix metalloproteinase 2 isoform b 
MMP2                  0.140   matrix metalloproteinase 2 isoform a preproprotein [...
MMP7                  0.133   matrix metalloproteinase 7 preproprotein 
MMP21                 0.095   matrix metalloproteinase 21 preproprotein 
MMP9                  0.094   matrix metalloproteinase 9 preproprotein 
MMP26                 0.076   matrix metalloproteinase 26 preproprotein 
MMP23B                0.058   matrix metalloproteinase 23B precursor 
LOC100289688          0.046   PREDICTED: hypothetical protein XP_002347374 
VTN                   0.029   vitronectin precursor 
LOC100128088          0.022   PREDICTED: similar to hCG2042634 
LOC100128088          0.022   PREDICTED: similar to hCG2042634 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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