Guide to the Human Genome
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Search of human proteins with 56117846

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56117846 synovial sarcoma translocation, chromosome 18
isoform 1 [Homo sapiens]
         (418 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56117846 synovial sarcoma translocation, chromosome 18 isofor...   921   0.0  
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor...   825   0.0  
gi|39777614 SS18-like protein 1 [Homo sapiens]                        485   e-137
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]    112   5e-25
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    98   2e-20
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               91   3e-18
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    88   2e-17
gi|10047104 synovial sarcoma translocation gene on chromosome 18...    83   5e-16
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    80   3e-15
gi|55750053 atrophin-1 [Homo sapiens]                                  74   3e-13
gi|55750041 atrophin-1 [Homo sapiens]                                  74   3e-13
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     72   7e-13
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     72   7e-13
gi|119943102 CREB binding protein isoform b [Homo sapiens]             70   5e-12
gi|119943104 CREB binding protein isoform a [Homo sapiens]             70   5e-12
gi|50345997 E1A binding protein p300 [Homo sapiens]                    69   6e-12
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...    67   2e-11
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...    67   2e-11
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    66   7e-11
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    66   7e-11
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               66   7e-11
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    65   1e-10
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]    65   1e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    63   6e-10
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]    63   6e-10

>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
           [Homo sapiens]
          Length = 418

 Score =  921 bits (2380), Expect = 0.0
 Identities = 418/418 (100%), Positives = 418/418 (100%)

Query: 1   MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
           MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1   MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60

Query: 61  LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
           LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61  LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120

Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
           NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180

Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
           MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240

Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
           GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300

Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
           QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
Sbjct: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360

Query: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
           QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418


>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
           [Homo sapiens]
          Length = 387

 Score =  825 bits (2132), Expect = 0.0
 Identities = 384/418 (91%), Positives = 384/418 (91%), Gaps = 31/418 (7%)

Query: 1   MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
           MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1   MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60

Query: 61  LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
           LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61  LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120

Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
           NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180

Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
           MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240

Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
           GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN             
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN------------- 287

Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
                             Q YY  GNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
Sbjct: 288 ------------------QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 329

Query: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
           QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 330 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387


>gi|39777614 SS18-like protein 1 [Homo sapiens]
          Length = 396

 Score =  485 bits (1248), Expect = e-137
 Identities = 251/419 (59%), Positives = 293/419 (69%), Gaps = 24/419 (5%)

Query: 1   MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
           MSVAFA+ R RGKGE+T   IQKMLD+N+HLIQCI++ Q+KGKT+EC+QYQQ+LH NLVY
Sbjct: 1   MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY 60

Query: 61  LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
           LATIADSNQNMQSLLPAPPTQNM +GPG + QSG      S    SD +  G PP+  +Q
Sbjct: 61  LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ 120

Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
            Q+     GP+H+ MQ   PN L  T+ S++ P        GY+H+ P+SQ +P+Q Q T
Sbjct: 121 GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT 169

Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
                 +GNY  R N++MQ N   MM QQ  +  Y+  QGG QHYQGQ   + MMGQ +Q
Sbjct: 170 ------IGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQS-SIAMMGQGSQ 222

Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
           G+ MMGQR + PYRP QQG  QQY GQE+YYG+QYSH  QG  E M QQYYPDGH DY Y
Sbjct: 223 GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSH-SQGAAEPMGQQYYPDGHGDYAY 281

Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY-QGPPPQQGYPPQQQQYPGQQGYP 359
           QQ SY EQ YDR +E+S+QHYYEGGNSQY QQQ  Y QG   QQ Y   QQQYP QQ YP
Sbjct: 282 QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP 339

Query: 360 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
           GQQQGYG +QG P  QYP Y QGQGQQYG YR  Q   P   QQRPYGY+QGQYGNYQQ
Sbjct: 340 GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTA-PSAQQQRPYGYEQGQYGNYQQ 396


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score =  112 bits (281), Expect = 5e-25
 Identities = 117/367 (31%), Positives = 134/367 (36%), Gaps = 47/367 (12%)

Query: 76  PAPPTQNMPMGP---GGMNQSGPPPPP--------RSHNMPSDGMVGGGPPAPHMQNQMN 124
           P+PP +  P GP   GG    GPPPPP        +  N P      G P  P  Q   +
Sbjct: 51  PSPPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 108

Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPV------Q 176
                P   P QGP P   N        P    G    GG     P     P        
Sbjct: 109 RSPRSPPGKP-QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD 167

Query: 177 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 236
           N+   S+  P    GP P    QP QGP     PP +    P  GG   QG  PP    G
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQG 223

Query: 237 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHN 296
              QG++     + PP +P  QGPP Q   Q              PP+G N+   P G  
Sbjct: 224 PPPQGDNKSQSARSPPGKP--QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK---PQGPP 278

Query: 297 DYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QGYPPQQQQY 352
             G  Q   P+ G       S     +G   Q G Q    QGPPP     QG PPQ    
Sbjct: 279 PPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNK 335

Query: 353 PGQQGYPGQQQGYGPSQGGPGPQY----PNYPQGQGQQYG----GYRPTQPGPPQPPQQR 404
           P     PG+ QG  P QGG   +     P  PQG  QQ G    G  P   G PQ PQ  
Sbjct: 336 PQGPPPPGKPQG-PPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 394

Query: 405 PYGYDQG 411
           P G  QG
Sbjct: 395 PAGQPQG 401



 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 95/336 (28%), Positives = 114/336 (33%), Gaps = 88/336 (26%)

Query: 68  NQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
           N++  S  P    Q  P   G   Q  PPPP             G P  P  Q     Q 
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP-------------GKPQGPPPQGGNKPQG 214

Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
           P P   P QGP P   N + S+ + P                              G+P 
Sbjct: 215 PPPPGKP-QGPPPQGDNKSQSARSPP------------------------------GKPQ 243

Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
              GP P    QP QGP     PP +    P  GG   QG  PP    G   QG      
Sbjct: 244 ---GPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296

Query: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPE 307
            + PP +P  QGPP Q   Q            QGPP    +   P             P 
Sbjct: 297 SRSPPGKP--QGPPPQGGNQP-----------QGPPPPPGKPQGP-------------PP 330

Query: 308 QGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGP 367
           QG ++P         +G   Q G +  + + PP +   PPQQ+            QG  P
Sbjct: 331 QGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQE--------GNNPQGPPP 382

Query: 368 SQGGPGPQYPNYPQGQGQQYGGYRPTQPG-PPQPPQ 402
             GG  PQ P  P   GQ  G  RP Q G P +PPQ
Sbjct: 383 PAGG-NPQQPQAPPA-GQPQGPPRPPQGGRPSRPPQ 416



 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 83/281 (29%), Positives = 100/281 (35%), Gaps = 58/281 (20%)

Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG--------- 220
           ++ +  +   ++  G P G      N    P   P   Q PP Q  N PQG         
Sbjct: 20  NEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 79

Query: 221 -----GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQY 275
                GG   QG  PP    G   QG+     R  PP +P  QGPP Q   Q        
Sbjct: 80  GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ------ 130

Query: 276 SHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY-----------EG 324
              G  PP G  Q   P G N      P    QG     ++ S+              +G
Sbjct: 131 ---GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQG 187

Query: 325 GNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQ---------------QGYPGQQQGYGP 367
           GN   G        QGPPPQ G  PQ    PG+               +  PG+ QG  P
Sbjct: 188 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQG-PP 246

Query: 368 SQGGPGPQYPNYPQGQGQ---QYGGYRPTQPGPPQPPQQRP 405
            QGG  PQ P  P G+ Q     GG +P  P PP  PQ  P
Sbjct: 247 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287



 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 39/118 (33%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 292 PDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY--QGPPPQQGYPPQQ 349
           P G    G  +P  P     +P     Q    GGN   G        QGPPPQ G  PQ 
Sbjct: 36  PQGAPPQGGNKPQGPPSPPGKPQGPPPQ----GGNQPQGPPPPPGKPQGPPPQGGNKPQG 91

Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG 407
              PG+   P  Q     S   P    P  PQG   Q G     QP  P PP  +P G
Sbjct: 92  PPPPGKPQGPPPQGDKSRSPRSP----PGKPQGPPPQGGN----QPQGPPPPPGKPQG 141


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 101/335 (30%), Positives = 120/335 (35%), Gaps = 50/335 (14%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           P+P   N P GP         PPP+  N P      G P  P  Q   +     P   P 
Sbjct: 39  PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP- 97

Query: 136 QGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVP----SSQSMPVQNQMTMSQGQPMGN 189
           QGP P   N        P    G    GG     P      Q  P Q   + S   P G 
Sbjct: 98  QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 157

Query: 190 -YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
             GP P    QP QGP     PP +    P  GG+  QG  PP    G   QG+      
Sbjct: 158 PQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS- 212

Query: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQ 308
           Q PP +P  QGPP Q   Q            QGPP    +   P             P Q
Sbjct: 213 QSPPGKP--QGPPPQGGNQP-----------QGPPPPPGKPQGP-------------PPQ 246

Query: 309 GYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPS 368
           G ++P         +G  +Q G +  + + PP +   PPQQ+            QG  P 
Sbjct: 247 GGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEG--------NNPQGPPPP 298

Query: 369 QGGPGPQYPNYPQGQGQQYGGYRPTQPG-PPQPPQ 402
            GG  PQ P  P   GQ  G  RP Q G P +PPQ
Sbjct: 299 AGG-NPQQPQAPPA-GQPQGPPRPPQGGRPSRPPQ 331



 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 116/380 (30%), Positives = 132/380 (34%), Gaps = 89/380 (23%)

Query: 53  MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGM 109
           +L   L+ L++  + N+++            P GP   GG    GPPPPP          
Sbjct: 5   LLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPP---------- 54

Query: 110 VGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
             G P  P  Q     Q P P   P QGP P                             
Sbjct: 55  --GKPQGPPPQGGNKPQGPPPPGKP-QGPPP----------------------------- 82

Query: 170 SQSMPVQNQMTMSQGQPMGN-YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQ 228
                 Q   + S   P G   GP P    QP QGP     PP +    P  GG   QG 
Sbjct: 83  ------QGDKSRSPRSPPGKPQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNRPQGP 132

Query: 229 QPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
            PP    G   QG+     R  PP +P  QGPP Q   Q           G  PP G  Q
Sbjct: 133 PPPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQ 180

Query: 289 QYYPDG-HNDYGYQQPSYPE----QGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ- 342
              P G     G   P  P+    QG       S     +G   Q G Q    QGPPP  
Sbjct: 181 GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQP---QGPPPPP 237

Query: 343 ---QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY----PNYPQGQGQQYG----GYR 391
              QG PPQ    P     PG+ QG  P+QGG   Q     P  PQG  QQ G    G  
Sbjct: 238 GKPQGPPPQGGNKPQGPPPPGKPQG-PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 296

Query: 392 PTQPGPPQPPQQRPYGYDQG 411
           P   G PQ PQ  P G  QG
Sbjct: 297 PPAGGNPQQPQAPPAGQPQG 316



 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 78/225 (34%), Positives = 88/225 (39%), Gaps = 34/225 (15%)

Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQI 250
           GP P    +P QGP     PP +    P  GG   QG  PP    G   QG+     R  
Sbjct: 38  GPSPQGGNKP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS- 92

Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGY 310
           PP +P  QGPP Q   Q           G  PP G  Q   P G N      P    QG 
Sbjct: 93  PPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG- 140

Query: 311 DRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQG 370
             P  D S+       S  G+ Q    GPPPQ G  PQ    P     PG+ QG  P QG
Sbjct: 141 PPPQGDKSR----SPRSPPGKPQ----GPPPQGGNQPQGPPPP-----PGKPQG-PPPQG 186

Query: 371 GP---GPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
           G    GP  P  PQG   Q    R +Q  P +P    P G +Q Q
Sbjct: 187 GKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQ 231



 Score = 29.6 bits (65), Expect = 5.3
 Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 65  ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
           A      QS    P     P    G N  GPPPP            GG P  P  Q    
Sbjct: 265 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP-----------AGGNPQQP--QAPPA 311

Query: 125 GQMPGPNHMPMQG 137
           GQ  GP   P  G
Sbjct: 312 GQPQGPPRPPQGG 324


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 108/354 (30%), Positives = 129/354 (36%), Gaps = 78/354 (22%)

Query: 79  PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
           P+Q MPM    M Q GPP P               PP P  Q QM  Q P P H    GP
Sbjct: 606 PSQQMPMN---MAQMGPPGPQGQFR----------PPGP--QGQMGPQGP-PLHQGGGGP 649

Query: 139 ----GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP--MGNYGP 192
               GP         +  P   HG  G   H  P     P        QG P   G+ GP
Sbjct: 650 QGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGP--------QGPPGPQGSSGP 701

Query: 193 RPNMSMQPNQGPMMH---QQPPSQQYNM-PQG--GGQHYQGQQPPMGMMGQVNQGNHMMG 246
           + +M  Q   GP  H   Q PP  Q ++ PQG  G Q  QG   P GM G          
Sbjct: 702 QGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQG---------- 751

Query: 247 QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYP 306
               PP+    QG P    G +   G       QGP  G+N +           Q P+  
Sbjct: 752 ----PPHPHGIQGGP----GSQGIQGPV----SQGPLMGLNPRGMQGPPGPRENQGPAPQ 799

Query: 307 EQGYDRPYEDSSQHYYEGGNSQYGQQQ-------DAYQGPPPQQGY--PPQQQQYPGQQG 357
                 P ++    +  GG   +G Q+          QGPPPQ     PPQ+ + P    
Sbjct: 800 GMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGP---- 855

Query: 358 YPGQQQGYGPSQGGPGP------QYPNYPQGQGQQYGGYRPTQPGPPQPPQQRP 405
            PG Q   GP QG  GP      Q P  PQGQ     G  P+Q   P   Q+ P
Sbjct: 856 -PGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTP 908



 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 116/415 (27%), Positives = 147/415 (35%), Gaps = 89/415 (21%)

Query: 75   LPAPPTQNMPMG----PGGMNQSGP--PPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP 128
            LP P   + P G    PG     GP  PP P+  + P   M   GPP P       G  P
Sbjct: 665  LPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGP-P 723

Query: 129  GPN-HMPMQGPGPNQLNMTNS----SMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQ 183
            GP  H+  QGP P    M        M  P   HG  GG     P SQ +    Q  +SQ
Sbjct: 724  GPQGHLGPQGP-PGTQGMQGPPGPRGMQGPPHPHGIQGG-----PGSQGI----QGPVSQ 773

Query: 184  GQPMGNY--------GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGG-----GQHYQGQQP 230
            G  MG          GPR N    P QG +M   P   +   P GG      Q  +G Q 
Sbjct: 774  GPLMGLNPRGMQGPPGPRENQGPAP-QGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQE 832

Query: 231  PMGMMGQVNQGNHMMGQRQI--PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
              GM G   QG+ +   +++  PP    QQGPPQ   G     G Q   G QG       
Sbjct: 833  IRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARG 892

Query: 289  QYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG----GNSQYGQQQ-----DAYQGP 339
             +   G   +  Q+      G   P+    Q         G  Q G Q      +  QGP
Sbjct: 893  PHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGP 952

Query: 340  PPQQGY---PPQQQQYPGQQGYPGQQQG--YGPSQG---------------GPGPQYPN- 378
             P +G    PP     P  +    Q  G  +GP +G               GP P +P+ 
Sbjct: 953  GPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDD 1012

Query: 379  -------YP-----------QGQG---QQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
                   +P           +G+G    Q   +R   PGPP PP  R +    G+
Sbjct: 1013 FSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGR 1067



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 100/392 (25%), Positives = 142/392 (36%), Gaps = 93/392 (23%)

Query: 75   LPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPP----APHMQNQMNG----Q 126
            +  P +Q   MG       GPP P  +      GM+ G PP     PH    + G    +
Sbjct: 767  IQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQE 826

Query: 127  MPGPNHM-PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQ 185
            M GP  +  MQGP P       S +  P    G         P SQS          QG 
Sbjct: 827  MRGPQEIRGMQGPPPQ-----GSMLGPPQELRGP--------PGSQS---------QQGP 864

Query: 186  PMGNYGPRPNMSMQPNQGPMMHQQP-----------PSQQYNMPQGG-------GQHYQG 227
            P G+ GP P   MQ   GP   Q P           P QQ   P  G        Q  Q 
Sbjct: 865  PQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQS 924

Query: 228  QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQ---------QGPPQQYSG------QEDYYG 272
              PP  + G   QG     Q +IPP  P Q         +GPP  + G       E   G
Sbjct: 925  TGPPPLIPGLGQQG----AQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGG 980

Query: 273  DQYS------HGGQ---GPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYE 323
             ++        GGQ   GPP+   +  +PD  +D+      +P++ +     +     +E
Sbjct: 981  PEHGPERGPFRGGQDCRGPPD--RRGPHPDFPDDFSRPDDFHPDKRFGHRLRE-----FE 1033

Query: 324  GGNSQYGQQQDAYQGPPPQQGYPPQQQQYP------GQQGYPGQQQGYGPSQGGPGPQYP 377
            G      Q++   +G P    +PP  +++         +G PG  +G  P      P+ P
Sbjct: 1034 GRGGPLPQEEKWRRGGPGPP-FPPDHREFSEGDGRGAARGPPGAWEGRRPGD-ERFPRDP 1091

Query: 378  NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYD 409
              P+ +G++   +R   P P    +  P G D
Sbjct: 1092 EDPRFRGRREESFRRGAP-PRHEGRAPPRGRD 1122



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 78/247 (31%), Positives = 89/247 (36%), Gaps = 55/247 (22%)

Query: 174 PVQNQMTMSQGQPMGNYGPRPNMSMQPNQ------GPMMHQQPPSQQYNMPQGGGQHYQG 227
           P   Q  MSQ  P G   P P+  M  N       GP    +PP  Q  M   G   +QG
Sbjct: 587 PFPGQGPMSQ-IPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQG 645

Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
              P G MG               P  P  QGPPQ     +D +G          P+GM 
Sbjct: 646 GGGPQGFMG---------------PQGP--QGPPQGLPRPQDMHG----------PQGM- 677

Query: 288 QQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY-- 345
            Q +P  H   G Q P  P QG   P          G     G      QGPP  QG+  
Sbjct: 678 -QRHPGPHGPLGPQGPPGP-QGSSGPQGHMGPQGPPGPQGHIGP-----QGPPGPQGHLG 730

Query: 346 ---PPQQQQYPGQQGYPGQQQGYGPS-----QGGPGPQYPNYPQGQGQQYGGYRPTQPGP 397
              PP  Q   G QG PG +   GP      QGGPG Q    P  QG   G       GP
Sbjct: 731 PQGPPGTQ---GMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGP 787

Query: 398 PQPPQQR 404
           P P + +
Sbjct: 788 PGPRENQ 794



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 86/272 (31%), Positives = 101/272 (37%), Gaps = 35/272 (12%)

Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNM-PQGGGQHYQGQ 228
           SQ MP+ N   M    P G + P         QGP +HQ     Q  M PQG     QG 
Sbjct: 607 SQQMPM-NMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGL 665

Query: 229 QPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGP-----PQQYSGQEDYYGDQYSHGGQGPP 283
             P  M G      H      + P  PP  GP     PQ + G +   G Q   G QGPP
Sbjct: 666 PRPQDMHGPQGMQRHPGPHGPLGPQGPP--GPQGSSGPQGHMGPQGPPGPQGHIGPQGPP 723

Query: 284 EGMNQQYYPDG-HNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQG---- 338
            G      P G     G Q P  P      P+     H  +GG    G Q    QG    
Sbjct: 724 -GPQGHLGPQGPPGTQGMQGPPGPRGMQGPPH----PHGIQGGPGSQGIQGPVSQGPLMG 778

Query: 339 --PPPQQGYP-PQQQQYPGQQGY-----PGQQQGYGPSQG--GPGPQYPNYPQG-QGQQY 387
             P   QG P P++ Q P  QG      P + +G  P  G  G GPQ    PQ  +G Q 
Sbjct: 779 LNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQG 838

Query: 388 GGYRPTQPGPPQ-----PPQQRPYGYDQGQYG 414
              + +  GPPQ     P  Q   G  QG  G
Sbjct: 839 PPPQGSMLGPPQELRGPPGSQSQQGPPQGSLG 870



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 36/95 (37%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 325 GNSQYGQQQDAYQGPPPQ--QGY--PPQQQQYP---GQQGYPGQQQGYGPSQGGPGPQYP 377
           G    G Q    QGP  Q  QG+  P   QQ P    Q G PG Q  + P    PGPQ  
Sbjct: 579 GTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRP----PGPQGQ 634

Query: 378 NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
             PQG     GG  P     PQ PQ  P G  + Q
Sbjct: 635 MGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQ 669



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 331 QQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN-YPQGQGQQYGG 389
           Q+Q     PPP  G P       G Q +PGQ         GP  Q P  + Q    Q   
Sbjct: 566 QKQVEQIQPPPSSGTP-----LLGPQPFPGQ---------GPMSQIPQGFQQPHPSQQMP 611

Query: 390 YRPTQPGPPQPPQQ-RPYGYDQGQYG 414
               Q GPP P  Q RP G  QGQ G
Sbjct: 612 MNMAQMGPPGPQGQFRPPG-PQGQMG 636


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 104/343 (30%), Positives = 123/343 (35%), Gaps = 64/343 (18%)

Query: 67  SNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
           S +   S++   P    P G G   Q  PPPP +    P  G            NQ  G 
Sbjct: 24  SQEESPSVISGKPEGRRPQG-GNQPQRTPPPPGKPEGRPPQG-----------GNQSQGP 71

Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPVQNQMTMSQG 184
            P P     +GP P   N +      P    G    GG     P  +            G
Sbjct: 72  PPRPGKP--EGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRP-----------G 118

Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM-GQVNQGNH 243
           +P G      N S  P   P   + PP      PQGG Q  QG  P  G   G   QG +
Sbjct: 119 KPEGPPPQGGNQSQGPPPRPGKPEGPP------PQGGNQS-QGPPPRPGKPEGPPPQGGN 171

Query: 244 MMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQ 302
              Q Q PP  P + +GPP Q   Q            QGPP    +   P+G    G  Q
Sbjct: 172 ---QSQGPPPHPGKPEGPPPQGGNQS-----------QGPPPRPGK---PEGPPPQGGNQ 214

Query: 303 PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ--QQDAYQGPPPQQGYPPQQQQYPGQ-QGYP 359
              P     +P    SQ    GGN   G        QGPPPQ+G  PQ+   PG+ QG P
Sbjct: 215 SQGPPPRPGKPEGPPSQ----GGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPP 270

Query: 360 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
               G  P Q  P P     PQG      G RP +P   QPPQ
Sbjct: 271 --PPGGNPQQ--PLPPPAGKPQGPPPPPQGGRPHRPPQGQPPQ 309



 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 83/240 (34%), Positives = 99/240 (41%), Gaps = 42/240 (17%)

Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM-GQVNQGN 242
           G+P G      N S  P   P   + PP      PQGG Q  QG  P  G   GQ  QG 
Sbjct: 55  GKPEGRPPQGGNQSQGPPPRPGKPEGPP------PQGGNQS-QGPPPRPGKPEGQPPQGG 107

Query: 243 HMMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQY-------YPDG 294
           +   Q Q PP RP + +GPP Q   Q      +       PP+G NQ          P+G
Sbjct: 108 N---QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEG 164

Query: 295 HNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QGYPPQQ- 349
               G  Q   P     +P         EG   Q G Q    QGPPP+    +G PPQ  
Sbjct: 165 PPPQGGNQSQGPPPHPGKP---------EGPPPQGGNQS---QGPPPRPGKPEGPPPQGG 212

Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQ----YPNYPQGQGQQYGGYRPTQPGPPQPPQQRP 405
            Q  G    PG+ +G  PSQGG  PQ    +P  PQG   Q G  +P +P PP  PQ  P
Sbjct: 213 NQSQGPPPRPGKPEG-PPSQGGNKPQGPPPHPGKPQGPPPQEGN-KPQRPPPPGRPQGPP 270



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 78/255 (30%), Positives = 101/255 (39%), Gaps = 49/255 (19%)

Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
           ++ +  +   ++  G+P G    RP    QP + P     PP +    P  GG   QG  
Sbjct: 20  NEDVSQEESPSVISGKPEGR---RPQGGNQPQRTP----PPPGKPEGRPPQGGNQSQGPP 72

Query: 230 PPMGMM-GQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
           P  G   G   QG +   Q Q PP RP   G P+   GQ    G+Q     QGPP    +
Sbjct: 73  PRPGKPEGPPPQGGN---QSQGPPPRP---GKPE---GQPPQGGNQ----SQGPPPRPGK 119

Query: 289 QYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QG 344
              P+G    G  Q   P     +P         EG   Q G Q    QGPPP+    +G
Sbjct: 120 ---PEGPPPQGGNQSQGPPPRPGKP---------EGPPPQGGNQS---QGPPPRPGKPEG 164

Query: 345 YPPQQ-QQYPGQQGYPGQQQGYGPSQGG-------PGPQYPNYPQGQGQQYGGYRPTQPG 396
            PPQ   Q  G   +PG+ +G  P QGG       P P  P  P  QG       P +PG
Sbjct: 165 PPPQGGNQSQGPPPHPGKPEG-PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 223

Query: 397 PPQPPQQRPYGYDQG 411
            P+ P  +     QG
Sbjct: 224 KPEGPPSQGGNKPQG 238


>gi|10047104 synovial sarcoma translocation gene on chromosome
          18-like 2 [Homo sapiens]
          Length = 77

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query: 1  MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
          MSVAF     RGK E+    IQ++L++N+ LI+CI++ QNKG+ +EC QYQ +LH NL+Y
Sbjct: 1  MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60

Query: 61 LATIADSNQNMQS 73
          LATIAD++    S
Sbjct: 61 LATIADASPTSTS 73


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 84/260 (32%), Positives = 108/260 (41%), Gaps = 51/260 (19%)

Query: 169 SSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQ 228
           SS+ +  +  + +  G+P G    RP    QP + P     PP +    P  GG   QG 
Sbjct: 19  SSEDVSQEESLFLISGKPEGR---RPQGGNQPQRPP----PPPGKPQGPPPQGGNQSQGP 71

Query: 229 QPPMGMM-GQVNQGNHMMGQRQIPPYRP--PQQGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            PP G   G+  QG +   Q Q PP  P  P++ PPQ         G+Q    G  PP G
Sbjct: 72  PPPPGKPEGRPPQGGN---QSQGPPPHPGKPERPPPQG--------GNQSQ--GTPPPPG 118

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQ--QQDAYQGPPPQQ 343
             ++  P G N     +P  P    +RP         +GGN   G        +GPPPQ+
Sbjct: 119 KPERPPPQGGNQS--HRPPPPPGKPERPPP-------QGGNQSQGPPPHPGKPEGPPPQE 169

Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP-QGQGQQYGGYRPTQP------- 395
           G   +  + P     PG+ QG  P Q G  PQ P  P + QG    G  P QP       
Sbjct: 170 GNKSRSARSP-----PGKPQG-PPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGK 223

Query: 396 --GPPQPPQ-QRPYGYDQGQ 412
             GPP PPQ  RP    QGQ
Sbjct: 224 PQGPPPPPQGGRPPRPAQGQ 243



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 65/206 (31%), Positives = 73/206 (35%), Gaps = 27/206 (13%)

Query: 78  PPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG-PNHM 133
           PP    P GP   GG    GPPPPP        G   G PP    Q+Q     PG P   
Sbjct: 51  PPPPGKPQGPPPQGGNQSQGPPPPP--------GKPEGRPPQGGNQSQGPPPHPGKPERP 102

Query: 134 PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ------NQMTMSQGQPM 187
           P Q  G NQ   T      P       G  +H  P     P +      NQ       P 
Sbjct: 103 PPQ--GGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG 160

Query: 188 GNYGPRP---NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
              GP P   N S      P   Q PP Q+ N PQG     + Q PP             
Sbjct: 161 KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPP 220

Query: 245 MGQRQIPPYRPPQQG--PPQQYSGQE 268
            G+ Q PP  PP QG  PP+   GQ+
Sbjct: 221 AGKPQGPP--PPPQGGRPPRPAQGQQ 244



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 32/168 (19%)

Query: 70  NMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
           N     P PP +     P G NQS  PPPP            G P  P  Q     Q P 
Sbjct: 108 NQSQGTPPPPGKPERPPPQGGNQSHRPPPPP-----------GKPERPPPQGGNQSQGPP 156

Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
           P+    +GP P + N + S+ + P    G               P Q +    QG P   
Sbjct: 157 PHPGKPEGPPPQEGNKSRSARSPPGKPQG---------------PPQQEGNKPQGPPP-- 199

Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
               P     P       QQP +     PQG     QG +PP    GQ
Sbjct: 200 ----PGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQ 243


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 96/387 (24%), Positives = 124/387 (32%), Gaps = 62/387 (16%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
           +L  APP  N P     +  + PPPP   P ++   S   +G  P     P+PH   Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339

Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
            G  PGP   P   P P+ L   +SS   P                SSS  S        
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399

Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
           P+SQ++P   +         + N  P+      P+Q       PP   Y         + 
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459

Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG-PPEG 285
           G  PP    G  +  +  +       +   QQ   QQ   Q+     Q  HG  G PP G
Sbjct: 460 GPFPP--STGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
                   G + + +     P  G  RPY     H     +SQ    Q    GPP     
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAH-LPPPHSQVSYSQAGPNGPPVSSS- 571

Query: 346 PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP---------------QGQGQQYGGY 390
                    Q  YP       PSQG  G  YP  P                       GY
Sbjct: 572 -SNSSSSTSQGSYPCSHP--SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY 628

Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQ 417
           +     PP PP   PYG      G Y+
Sbjct: 629 KTA--SPPGPP---PYGKRAPSPGAYK 650



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 86/368 (23%), Positives = 115/368 (31%), Gaps = 53/368 (14%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
           P P  Q  P G GG+  SGPP  P+     S  G   GG    PP   +    +G    P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271

Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
              P   P         P   N  + + N+ P  +   +   + S P   + P+   +  
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331

Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ------YNMPQGGGQHYQGQQPPMG 233
             + GQ MG   P P     P   P  H  PP+           P               
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSS-SSAAASSS 388

Query: 234 MMGQVNQGNHMMGQRQIPPYRPPQQGPPQ---QYSGQEDYYGDQ-------YSHGGQGPP 283
                +  +     + +P Y  P   PP      S Q   Y          +S G   PP
Sbjct: 389 SSSSSSSASPFPASQALPSY--PHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPP 446

Query: 284 EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQ 343
                    + H   G   PS   Q    P   +  H+++    Q  QQQ   Q      
Sbjct: 447 PYGRLLANSNAHP--GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQ------ 498

Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQ 402
               QQQQ+ G  G P       P +G  G  +  +P       G  RP  PGP   PP 
Sbjct: 499 ----QQQQHHGNSGPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP 552

Query: 403 QRPYGYDQ 410
                Y Q
Sbjct: 553 HSQVSYSQ 560



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 51/203 (25%), Positives = 63/203 (31%), Gaps = 55/203 (27%)

Query: 218 PQGGGQHYQGQQPPMGMMGQV-NQGNHMMGQRQIP--PYRPPQQGPPQQYSGQEDYYGDQ 274
           P+   Q  +   P +   G V N  +   G  Q P  PY PP   PP             
Sbjct: 121 PRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ---------- 170

Query: 275 YSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQD 334
                  PP+   +Q  P+   +     PS    GY  P E  +   +            
Sbjct: 171 -------PPDSTPRQ--PEASFE---PHPSVTPTGYHAPMEPPTSRMF------------ 206

Query: 335 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ 394
             Q PP     PP  Q YPG  G        GP  GG        P G G+Q+    PT 
Sbjct: 207 --QAPPGAP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTT 258

Query: 395 P----------GPPQPPQQRPYG 407
           P           PP  P   P G
Sbjct: 259 PISVSSSGASGAPPTKPPTTPVG 281


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 96/387 (24%), Positives = 124/387 (32%), Gaps = 62/387 (16%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
           +L  APP  N P     +  + PPPP   P ++   S   +G  P     P+PH   Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339

Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
            G  PGP   P   P P+ L   +SS   P                SSS  S        
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399

Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
           P+SQ++P   +         + N  P+      P+Q       PP   Y         + 
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459

Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG-PPEG 285
           G  PP    G  +  +  +       +   QQ   QQ   Q+     Q  HG  G PP G
Sbjct: 460 GPFPP--STGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
                   G + + +     P  G  RPY     H     +SQ    Q    GPP     
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAH-LPPPHSQVSYSQAGPNGPPVSSS- 571

Query: 346 PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP---------------QGQGQQYGGY 390
                    Q  YP       PSQG  G  YP  P                       GY
Sbjct: 572 -SNSSSSTSQGSYPCSHP--SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY 628

Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQ 417
           +     PP PP   PYG      G Y+
Sbjct: 629 KTA--SPPGPP---PYGKRAPSPGAYK 650



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 86/368 (23%), Positives = 115/368 (31%), Gaps = 53/368 (14%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
           P P  Q  P G GG+  SGPP  P+     S  G   GG    PP   +    +G    P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271

Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
              P   P         P   N  + + N+ P  +   +   + S P   + P+   +  
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331

Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ------YNMPQGGGQHYQGQQPPMG 233
             + GQ MG   P P     P   P  H  PP+           P               
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSS-SSAAASSS 388

Query: 234 MMGQVNQGNHMMGQRQIPPYRPPQQGPPQ---QYSGQEDYYGDQ-------YSHGGQGPP 283
                +  +     + +P Y  P   PP      S Q   Y          +S G   PP
Sbjct: 389 SSSSSSSASPFPASQALPSY--PHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPP 446

Query: 284 EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQ 343
                    + H   G   PS   Q    P   +  H+++    Q  QQQ   Q      
Sbjct: 447 PYGRLLANSNAHP--GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQ------ 498

Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQ 402
               QQQQ+ G  G P       P +G  G  +  +P       G  RP  PGP   PP 
Sbjct: 499 ----QQQQHHGNSGPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP 552

Query: 403 QRPYGYDQ 410
                Y Q
Sbjct: 553 HSQVSYSQ 560



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 51/203 (25%), Positives = 63/203 (31%), Gaps = 55/203 (27%)

Query: 218 PQGGGQHYQGQQPPMGMMGQV-NQGNHMMGQRQIP--PYRPPQQGPPQQYSGQEDYYGDQ 274
           P+   Q  +   P +   G V N  +   G  Q P  PY PP   PP             
Sbjct: 121 PRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ---------- 170

Query: 275 YSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQD 334
                  PP+   +Q  P+   +     PS    GY  P E  +   +            
Sbjct: 171 -------PPDSTPRQ--PEASFE---PHPSVTPTGYHAPMEPPTSRMF------------ 206

Query: 335 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ 394
             Q PP     PP  Q YPG  G        GP  GG        P G G+Q+    PT 
Sbjct: 207 --QAPPGAP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTT 258

Query: 395 P----------GPPQPPQQRPYG 407
           P           PP  P   P G
Sbjct: 259 PISVSSSGASGAPPTKPPTTPVG 281


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 103/399 (25%), Positives = 125/399 (31%), Gaps = 73/399 (18%)

Query: 86  GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
           G GG+   +GP      H  P+              PPAP +  +   G  PG       
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247

Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
           G  P   +  + ++SS +      G+MGG   S      P   + P  NQ+  S      
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307

Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
            QG P G+Y   P           M  Q      +        GG   +    PM   G 
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366

Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
              G   + +   P     Q G   PQ Y G   Y        G Q  HG  G P G   
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426

Query: 288 QQYYPD----------GHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ 337
            Q YP           G   Y  Q P Y +QG     +     YY   +    QQQ  Y 
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486

Query: 338 GPPPQQ------GYPPQQQQYPGQ----QGYPGQQQGYGPSQGGPGP------------- 374
             PP Q       Y  Q Q  P Q    Q    QQ    P Q  P P             
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546

Query: 375 QYPNYPQGQGQQ-YGGYRPTQPGPPQPPQQRPYGYDQGQ 412
             P Y Q Q Q  Y   +P QP P    QQ  Y   Q Q
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 97/365 (26%), Positives = 116/365 (31%), Gaps = 78/365 (21%)

Query: 71  MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
           +  LL +P +     G PGG    GP           DG  G GP    M +Q  G    
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342

Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
                    G  Q      S + P S   S GG      + Q     +QM   + QP G 
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397

Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMP---------QG------GGQHYQGQQPPMGM 234
             P  +    P  GP      P Q Y            QG      GG  Y  Q PP G 
Sbjct: 398 TNPY-SQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQ 456

Query: 235 MGQVNQGNHMMG----------QRQIPPY--RPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
            G    G               Q+Q PPY  +PP Q P  Q S Q+             P
Sbjct: 457 QGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQ--------P 508

Query: 283 PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ 342
           P+  +              QP Y +Q    P++ S   Y         QQ    Q P  Q
Sbjct: 509 PQLQS-------------SQPPYSQQPSQPPHQQSPAPY-------PSQQSTTQQHPQSQ 548

Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
             Y   Q Q P QQ  P Q      SQ    PQ    PQ Q  Q   Y   +  PPQ   
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ----PQSQQSQQTAYSQQRFPPPQELS 604

Query: 403 QRPYG 407
           Q  +G
Sbjct: 605 QDSFG 609



 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 84/334 (25%), Positives = 120/334 (35%), Gaps = 47/334 (14%)

Query: 65  ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
           A S  + Q+  P P +Q         +Q   PPP     +  D        AP M +   
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623

Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
           GQ     ++ +Q    +  +++ S  ++P  + G++  G + S  SS    QS P Q+  
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681

Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
           +      + G  GP P+    P        GP+     P  Q       GQ      P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741

Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
                     +M    Q+P Y  PQ G    P+Q SG + + G     Q S G  GP  G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801

Query: 286 MNQQYYPDGHNDYGY-QQPSY---PEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPP 341
              QY P G    GY +QP+Y   P   Y         +    G   +GQ      G PP
Sbjct: 802 ---QYGPQG----GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-----PGIPP 849

Query: 342 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 375
               PP +  +      P     YGP+     PQ
Sbjct: 850 YGTLPPGRMSHASMGNRP-----YGPNMANMPPQ 878



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 100/370 (27%), Positives = 127/370 (34%), Gaps = 76/370 (20%)

Query: 65   ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
            ADS ++   + P  P      G G M   GP  P  +    S  M  GG   PP P   +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167

Query: 122  QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
              + Q+P     P+  PG ++ N           S  +    N   P+    P  N   M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220

Query: 182  SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
                 MG       MS +PN+ P   M + P S  + M  G G +  G   P        
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267

Query: 240  QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
             GN  MG RQ  PY  P              Y    +  G GP          +G+   G
Sbjct: 1268 LGNVAMGPRQHYPYGGP--------------YDRVRTEPGIGP----------EGNMSTG 1303

Query: 300  YQQP----SYPEQGYDRP--YEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQ--QQ 351
              QP    S P+ G   P  Y    Q   +  +  YG Q    QG P    +P QQ    
Sbjct: 1304 APQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFST-QGTPSGSPFPSQQTTMY 1362

Query: 352  YPGQQGYPGQQQG-YGP-SQGGPGPQYP-NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGY 408
               QQ Y     G YGP ++   G  Y   Y  GQGQ      P  P  PQP  Q+    
Sbjct: 1363 QQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLP--PAQPQPASQQQAAQ 1420

Query: 409  DQGQYGNYQQ 418
               Q   Y Q
Sbjct: 1421 PSPQQDVYNQ 1430



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 115/448 (25%), Positives = 141/448 (31%), Gaps = 123/448 (27%)

Query: 80  TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           + + PM PG     G P    P P S   P D M G   P P+       Q  GP   P 
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412

Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
           QG G P Q   + +    P +  G    +MGG                          YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472

Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
              P   Q  P  +Q   SQ              QP      +P  S QP+Q P  HQQ 
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530

Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
           P    SQQ            Y+ PQ     YQ QQP    P  +  Q         Q Q 
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589

Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHG-----GQGPPEGMNQ--QYYPDGHNDYGYQQP 303
             Y   +  PPQ+ S  +D +G Q S        +G  E MN   Q  P    D      
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647

Query: 304 SYP--EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGP----------------PPQQGY 345
             P   +G   P   +S     G +S  G+Q +  Q P                P   G 
Sbjct: 648 DLPMGTEGALSPGVSTS-----GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702

Query: 346 PPQQQQ----------YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQ-----QYGGY 390
           P    Q           PG Q  P    G   S   P     +  Q +G      Q   Y
Sbjct: 703 PASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQY 762

Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
              QPG    P+Q   G      G+YQQ
Sbjct: 763 SSPQPGSALSPRQPSGGQIHTGMGSYQQ 790



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 94/373 (25%), Positives = 111/373 (29%), Gaps = 62/373 (16%)

Query: 78  PPTQNMPMGPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PP    P  P       P P  +S     P        P A     Q   Q P P+ +  
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQ 575

Query: 136 QGPGPNQLNMTN-----SSMNMPSS---SHGSMGGYNHSVPS-SQSMPVQNQMTMS---- 182
           Q   P   +  +     S    P     S  S G    S PS + S   Q  M +S    
Sbjct: 576 QAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSR 635

Query: 183 -----------QGQPMGNYGP-RPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ--HYQGQ 228
                         PMG  G   P +S          Q  P+Q    P         +G 
Sbjct: 636 PSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695

Query: 229 QP-PMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
            P P+G    V Q          P   P  Q PP+  SGQ D       H        MN
Sbjct: 696 SPSPVGSPASVAQSR---SGPLSPAAVPGNQMPPRPPSGQSD----SIMH------PSMN 742

Query: 288 QQYYPDGHNDYGYQQ--PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ---QQDAYQGPPPQ 342
           Q        D GY Q  P  P+    +P    S     GG    G    QQ++     PQ
Sbjct: 743 QSSIAQ---DRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQ 799

Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
            G    Q  YP Q  Y        PS G  G      P G G Q  G     P    PP 
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAG---GINPMGAGGQMHGQPGIPPYGTLPPG 856

Query: 403 Q--------RPYG 407
           +        RPYG
Sbjct: 857 RMSHASMGNRPYG 869



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 41/150 (27%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 79   PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
            P    P   G    S PP      NMP   M  GGP     +    G M        QG 
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMM--GGPIQASAEVAQQGTM-------WQGR 1501

Query: 139  GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQ---------PMGN 189
                 +MT +  N  S+     G   H V  +  M   +Q    +G          P G 
Sbjct: 1502 N----DMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGP 1557

Query: 190  YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
              P P M+  P   P  +Q PPS Q ++PQ
Sbjct: 1558 SAPVPPMTRPP---PSNYQPPPSMQNHIPQ 1584



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 25/136 (18%)

Query: 52   QMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVG 111
            +MLHT         D   N +   P+  T+  P GP         PPP ++         
Sbjct: 1531 EMLHT---------DQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQ-------- 1573

Query: 112  GGPPAPHMQNQM-NGQMPGPNHMPMQG-PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
               P P MQN +     P P   PM+    P++    +S M M  +  G     +H  P+
Sbjct: 1574 ---PPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKA--GPPVPASHIAPA 1628

Query: 170  SQSMP-VQNQMTMSQG 184
                P ++  +T   G
Sbjct: 1629 PVQPPMIRRDITFPPG 1644



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 75  LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
           +P      M   PGGMN+                   PP   NM   GM+G GPP     
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934

Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
           N M G M  P   P    G     M N+S  M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 103/399 (25%), Positives = 125/399 (31%), Gaps = 73/399 (18%)

Query: 86  GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
           G GG+   +GP      H  P+              PPAP +  +   G  PG       
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247

Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
           G  P   +  + ++SS +      G+MGG   S      P   + P  NQ+  S      
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307

Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
            QG P G+Y   P           M  Q      +        GG   +    PM   G 
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366

Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
              G   + +   P     Q G   PQ Y G   Y        G Q  HG  G P G   
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426

Query: 288 QQYYPD----------GHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ 337
            Q YP           G   Y  Q P Y +QG     +     YY   +    QQQ  Y 
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486

Query: 338 GPPPQQ------GYPPQQQQYPGQ----QGYPGQQQGYGPSQGGPGP------------- 374
             PP Q       Y  Q Q  P Q    Q    QQ    P Q  P P             
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546

Query: 375 QYPNYPQGQGQQ-YGGYRPTQPGPPQPPQQRPYGYDQGQ 412
             P Y Q Q Q  Y   +P QP P    QQ  Y   Q Q
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 97/365 (26%), Positives = 116/365 (31%), Gaps = 78/365 (21%)

Query: 71  MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
           +  LL +P +     G PGG    GP           DG  G GP    M +Q  G    
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342

Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
                    G  Q      S + P S   S GG      + Q     +QM   + QP G 
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397

Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMP---------QG------GGQHYQGQQPPMGM 234
             P  +    P  GP      P Q Y            QG      GG  Y  Q PP G 
Sbjct: 398 TNPY-SQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQ 456

Query: 235 MGQVNQGNHMMG----------QRQIPPY--RPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
            G    G               Q+Q PPY  +PP Q P  Q S Q+             P
Sbjct: 457 QGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQ--------P 508

Query: 283 PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ 342
           P+  +              QP Y +Q    P++ S   Y         QQ    Q P  Q
Sbjct: 509 PQLQS-------------SQPPYSQQPSQPPHQQSPAPY-------PSQQSTTQQHPQSQ 548

Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
             Y   Q Q P QQ  P Q      SQ    PQ    PQ Q  Q   Y   +  PPQ   
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ----PQSQQSQQTAYSQQRFPPPQELS 604

Query: 403 QRPYG 407
           Q  +G
Sbjct: 605 QDSFG 609



 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 84/334 (25%), Positives = 120/334 (35%), Gaps = 47/334 (14%)

Query: 65  ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
           A S  + Q+  P P +Q         +Q   PPP     +  D        AP M +   
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623

Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
           GQ     ++ +Q    +  +++ S  ++P  + G++  G + S  SS    QS P Q+  
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681

Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
           +      + G  GP P+    P        GP+     P  Q       GQ      P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741

Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
                     +M    Q+P Y  PQ G    P+Q SG + + G     Q S G  GP  G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801

Query: 286 MNQQYYPDGHNDYGY-QQPSY---PEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPP 341
              QY P G    GY +QP+Y   P   Y         +    G   +GQ      G PP
Sbjct: 802 ---QYGPQG----GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-----PGIPP 849

Query: 342 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 375
               PP +  +      P     YGP+     PQ
Sbjct: 850 YGTLPPGRMSHASMGNRP-----YGPNMANMPPQ 878



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 115/448 (25%), Positives = 141/448 (31%), Gaps = 123/448 (27%)

Query: 80  TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           + + PM PG     G P    P P S   P D M G   P P+       Q  GP   P 
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412

Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
           QG G P Q   + +    P +  G    +MGG                          YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472

Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
              P   Q  P  +Q   SQ              QP      +P  S QP+Q P  HQQ 
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530

Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
           P    SQQ            Y+ PQ     YQ QQP    P  +  Q         Q Q 
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589

Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHG-----GQGPPEGMNQ--QYYPDGHNDYGYQQP 303
             Y   +  PPQ+ S  +D +G Q S        +G  E MN   Q  P    D      
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647

Query: 304 SYP--EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGP----------------PPQQGY 345
             P   +G   P   +S     G +S  G+Q +  Q P                P   G 
Sbjct: 648 DLPMGTEGALSPGVSTS-----GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702

Query: 346 PPQQQQ----------YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQ-----QYGGY 390
           P    Q           PG Q  P    G   S   P     +  Q +G      Q   Y
Sbjct: 703 PASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQY 762

Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
              QPG    P+Q   G      G+YQQ
Sbjct: 763 SSPQPGSALSPRQPSGGQIHTGMGSYQQ 790



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 94/373 (25%), Positives = 111/373 (29%), Gaps = 62/373 (16%)

Query: 78  PPTQNMPMGPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PP    P  P       P P  +S     P        P A     Q   Q P P+ +  
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQ 575

Query: 136 QGPGPNQLNMTN-----SSMNMPSS---SHGSMGGYNHSVPS-SQSMPVQNQMTMS---- 182
           Q   P   +  +     S    P     S  S G    S PS + S   Q  M +S    
Sbjct: 576 QAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSR 635

Query: 183 -----------QGQPMGNYGP-RPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ--HYQGQ 228
                         PMG  G   P +S          Q  P+Q    P         +G 
Sbjct: 636 PSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695

Query: 229 QP-PMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
            P P+G    V Q          P   P  Q PP+  SGQ D       H        MN
Sbjct: 696 SPSPVGSPASVAQSR---SGPLSPAAVPGNQMPPRPPSGQSD----SIMH------PSMN 742

Query: 288 QQYYPDGHNDYGYQQ--PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ---QQDAYQGPPPQ 342
           Q        D GY Q  P  P+    +P    S     GG    G    QQ++     PQ
Sbjct: 743 QSSIAQ---DRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQ 799

Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
            G    Q  YP Q  Y        PS G  G      P G G Q  G     P    PP 
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAG---GINPMGAGGQMHGQPGIPPYGTLPPG 856

Query: 403 Q--------RPYG 407
           +        RPYG
Sbjct: 857 RMSHASMGNRPYG 869



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 89/349 (25%), Positives = 113/349 (32%), Gaps = 97/349 (27%)

Query: 65   ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
            ADS ++   + P  P      G G M   GP  P  +    S  M  GG   PP P   +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167

Query: 122  QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
              + Q+P     P+  PG ++ N           S  +    N   P+    P  N   M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220

Query: 182  SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
                 MG       MS +PN+ P   M + P S  + M  G G +  G   P        
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267

Query: 240  QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
             GN  MG RQ  PY  P              Y    +  G GP          +G+   G
Sbjct: 1268 LGNVAMGPRQHYPYGGP--------------YDRVRTEPGIGP----------EGNMSTG 1303

Query: 300  YQQP----SYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQ 355
              QP    S P+ G   P             S+Y          PPQQ    QQQQ    
Sbjct: 1304 APQPNLMPSNPDSGMYSP-------------SRY----------PPQQ----QQQQQQRH 1336

Query: 356  QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQR 404
              Y  Q    G   G P P        Q QQ     P     P+P + R
Sbjct: 1337 DSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQVSSPAPL----PRPMENR 1381



 Score = 30.8 bits (68), Expect = 2.4
 Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 75  LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
           +P      M   PGGMN+                   PP   NM   GM+G GPP     
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934

Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
           N M G M  P   P    G     M N+S  M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964


>gi|119943102 CREB binding protein isoform b [Homo sapiens]
          Length = 2404

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 103/395 (26%), Positives = 122/395 (30%), Gaps = 61/395 (15%)

Query: 69   QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGG---------------- 112
            Q  Q L       +MP G  GM   G    P S N+P    V G                
Sbjct: 1929 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPL 1988

Query: 113  -------GPPAPHMQNQMNGQMPGPNHMPMQGP---GPNQLNMTNSSMNMPSSSHGSMGG 162
                   G P P +  Q    + GP    +Q P    P+ L     ++  PSS       
Sbjct: 1989 PQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQV 2048

Query: 163  YNHSVPSSQSMPVQ-NQMTMSQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQ 219
             N    + Q M     Q T           P+P +  QP   P   MHQQP  Q  N  Q
Sbjct: 2049 LNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQ 2108

Query: 220  GG--------GQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPP------QQGPPQQY 264
             G         Q   G   P G  +  +N G++       P YR        QQ   QQ 
Sbjct: 2109 AGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQ 2168

Query: 265  SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG 324
              Q+     Q S G  G   G  Q   P G   Y              P + SS      
Sbjct: 2169 QQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAA 2228

Query: 325  GNSQYGQQQDAYQG----PPPQQGYPP---QQQQYPGQQGYPGQQQGYGPSQG--GPGPQ 375
               Q GQ      G    P  QQ       QQQQ   Q G PGQ     P Q      PQ
Sbjct: 2229 QMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQ 2288

Query: 376  YPNYPQGQGQQYGGYRPTQPGPPQP-----PQQRP 405
              + P   GQQ       Q   P P     PQ +P
Sbjct: 2289 ASHLP---GQQIATSLSNQVRSPAPVQSPRPQSQP 2320



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
           S LP PP    P+ P       PPP   +  MPS                +    P P  
Sbjct: 803 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 839

Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
            P Q   P Q          PS+   S G      P S     Q Q T + Q        
Sbjct: 840 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 889

Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
           P+P   +QP     P   QQ P+  +  P G
Sbjct: 890 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 920



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 65   ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
            ADS  N+Q  L     Q   M      Q G P  P               P    Q+ ++
Sbjct: 2243 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2284

Query: 125  GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
            GQ P  +H+P Q    +  N   S   + S    S   ++   P  Q  P  + ++   G
Sbjct: 2285 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2343

Query: 185  QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
             P  + G    M+   +QG   H   P Q   +PQ
Sbjct: 2344 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2373


>gi|119943104 CREB binding protein isoform a [Homo sapiens]
          Length = 2442

 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 103/395 (26%), Positives = 122/395 (30%), Gaps = 61/395 (15%)

Query: 69   QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGG---------------- 112
            Q  Q L       +MP G  GM   G    P S N+P    V G                
Sbjct: 1967 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPL 2026

Query: 113  -------GPPAPHMQNQMNGQMPGPNHMPMQGP---GPNQLNMTNSSMNMPSSSHGSMGG 162
                   G P P +  Q    + GP    +Q P    P+ L     ++  PSS       
Sbjct: 2027 PQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQV 2086

Query: 163  YNHSVPSSQSMPVQ-NQMTMSQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQ 219
             N    + Q M     Q T           P+P +  QP   P   MHQQP  Q  N  Q
Sbjct: 2087 LNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQ 2146

Query: 220  GG--------GQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPP------QQGPPQQY 264
             G         Q   G   P G  +  +N G++       P YR        QQ   QQ 
Sbjct: 2147 AGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQ 2206

Query: 265  SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG 324
              Q+     Q S G  G   G  Q   P G   Y              P + SS      
Sbjct: 2207 QQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAA 2266

Query: 325  GNSQYGQQQDAYQG----PPPQQGYPP---QQQQYPGQQGYPGQQQGYGPSQG--GPGPQ 375
               Q GQ      G    P  QQ       QQQQ   Q G PGQ     P Q      PQ
Sbjct: 2267 QMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQ 2326

Query: 376  YPNYPQGQGQQYGGYRPTQPGPPQP-----PQQRP 405
              + P   GQQ       Q   P P     PQ +P
Sbjct: 2327 ASHLP---GQQIATSLSNQVRSPAPVQSPRPQSQP 2358



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
           S LP PP    P+ P       PPP   +  MPS                +    P P  
Sbjct: 841 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 877

Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
            P Q   P Q          PS+   S G      P S     Q Q T + Q        
Sbjct: 878 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 927

Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
           P+P   +QP     P   QQ P+  +  P G
Sbjct: 928 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 958



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 65   ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
            ADS  N+Q  L     Q   M      Q G P  P               P    Q+ ++
Sbjct: 2281 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2322

Query: 125  GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
            GQ P  +H+P Q    +  N   S   + S    S   ++   P  Q  P  + ++   G
Sbjct: 2323 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2381

Query: 185  QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
             P  + G    M+   +QG   H   P Q   +PQ
Sbjct: 2382 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2411


>gi|50345997 E1A binding protein p300 [Homo sapiens]
          Length = 2414

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 110/439 (25%), Positives = 139/439 (31%), Gaps = 89/439 (20%)

Query: 49   QYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDG 108
            Q  QML   +  +       Q      P P T   P G        P P  +    P + 
Sbjct: 1823 QQAQMLRRRMASMQRTGVVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNS 1882

Query: 109  MVGGGP----PAPHMQNQMNGQMPGPN-----HMPMQGPGPNQLNMTNSSMNMPSSSHGS 159
            M    P      P  Q +  GQ+  P        P+ GP P  + M         +    
Sbjct: 1883 MPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQM 1942

Query: 160  MGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPR----PNMSMQPNQGPM-MHQQPPSQQ 214
                    P    MP    M      PMG   P     P+  ++P  GP  M QQPP  Q
Sbjct: 1943 AHVQIFQRPIQHQMPPMTPMA-----PMGMNPPPMTRGPSGHLEPGMGPTGMQQQPPWSQ 1997

Query: 215  YNMPQGGGQHYQGQQPPMGMMGQVNQGNHM-------MGQRQIPPYRP------------ 255
              +PQ   Q  Q   P   MM     G  +       +GQ  I P +P            
Sbjct: 1998 GGLPQP--QQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLL 2055

Query: 256  --------PQQ---------GPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDY 298
                    P Q           PQ  +        +Y++    P  G  Q   P G    
Sbjct: 2056 RTLRSPSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANSNPQPIPG--QPGMPQGQP-- 2111

Query: 299  GYQQPSYP-EQGYDRPYEDSSQHYYEGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYP-- 353
            G Q P+ P +QG        + +  + G  + G  QQQ   Q  PP  G  PQ QQ    
Sbjct: 2112 GLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQAQQMNMN 2171

Query: 354  --------------GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ 399
                           Q     QQQG GP   G GP   N+ Q Q  Q  GY      PPQ
Sbjct: 2172 HNTMPSQFRDILRRQQMMQQQQQQGAGP---GIGPGMANHNQFQQPQGVGY------PPQ 2222

Query: 400  PPQQRPYGYDQGQYGNYQQ 418
              Q+  +   Q Q GN  Q
Sbjct: 2223 QQQRMQHHMQQMQQGNMGQ 2241



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 108/463 (23%), Positives = 150/463 (32%), Gaps = 100/463 (21%)

Query: 6    AAPRQRGK--GEITP-----AAIQKMLDDNNHLIQCIMDSQNKGKT----SECSQYQQML 54
            A P  +GK  G++TP      A   +       ++  M  Q   +T    +    +Q+ +
Sbjct: 1893 AGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQMAHVQIFQRPI 1952

Query: 55   HTNLVYLATIADSNQNMQSLLPAPPTQNMP-MGPGGMNQSGPPPPPRSHNMPSDGMVGGG 113
               +  +  +A    N   +   P     P MGP GM Q    PP     +P    +  G
Sbjct: 1953 QHQMPPMTPMAPMGMNPPPMTRGPSGHLEPGMGPTGMQQQ---PPWSQGGLPQPQQLQSG 2009

Query: 114  PPAPHMQN-QMNGQ------MPGPNHM---PMQGPGPNQLNMTN--SSMNMPSS--SHGS 159
             P P M +   +GQ       PG   +   P++    +Q  + N   ++  PSS      
Sbjct: 2010 MPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLLRTLRSPSSPLQQQQ 2069

Query: 160  MGGYNHSVP---------------SSQSMPVQNQMTMSQGQP-------MGNYGPRPNMS 197
            +    H+ P               +S   P+  Q  M QGQP        G  G   N +
Sbjct: 2070 VLSILHANPQLLAAFIKQRAAKYANSNPQPIPGQPGMPQGQPGLQPPTMPGQQGVHSNPA 2129

Query: 198  MQPNQGPM--------MHQQPPSQQYNMPQGGGQHYQGQQPPMG---------------- 233
            MQ N  PM        + QQ P QQ   P GG    Q QQ  M                 
Sbjct: 2130 MQ-NMNPMQAGVQRAGLPQQQPQQQLQPPMGG-MSPQAQQMNMNHNTMPSQFRDILRRQQ 2187

Query: 234  -MMGQVNQG----------NHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHG---- 278
             M  Q  QG          NH   Q+      PPQQ    Q+  Q+   G+    G    
Sbjct: 2188 MMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNMGQIGQLPQ 2247

Query: 279  GQGPPEGMNQQYYPDGHNDYGYQQPSYPE----QGYDRPYEDSSQHY--YEGGNSQYGQQ 332
              G   G + Q Y           P  P     Q +  P +  S H    +  NS   Q 
Sbjct: 2248 ALGAEAGASLQAYQQRLLQQQMGSPVQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQV 2307

Query: 333  QDAYQGPPPQ-QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGP 374
            +     P P+ Q  PP     P  Q  P       P    P P
Sbjct: 2308 RSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHH-VSPQTSSPHP 2349



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 54/196 (27%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 79  PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHM-----QNQMN--GQ--MPG 129
           P  NM     GM  +GP P P         M+ G  P   M     Q+ +N  GQ  M  
Sbjct: 671 PGPNMGQPQPGMTSNGPLPDP--------SMIRGSVPNQMMPRITPQSGLNQFGQMSMAQ 722

Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSSQSMPVQNQMTMSQGQPMG 188
           P  +P Q P P Q    +  +  P + +  MG G     PS+Q   +      SQG  + 
Sbjct: 723 PPIVPRQTP-PLQ---HHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVT 778

Query: 189 NYGPRPNMSMQP-NQGPMMHQQPPSQQYNMPQGG-GQHYQGQQPPMGMMGQVNQGNHMMG 246
           N    P+    P +Q  M     P     MP G  G H    Q P   + Q N  + +  
Sbjct: 779 NIPLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQ-NSPSPVPS 837

Query: 247 QRQIPPYRPPQQGPPQ 262
           +   P + PP  G  Q
Sbjct: 838 RTPTPHHTPPSIGAQQ 853



 Score = 36.6 bits (83), Expect = 0.043
 Identities = 64/240 (26%), Positives = 79/240 (32%), Gaps = 50/240 (20%)

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN--QGNHMMGQRQIP-PYRPPQ 257
           N GP M Q  P    N P       +G  P   MM ++    G +  GQ  +  P   P+
Sbjct: 670 NPGPNMGQPQPGMTSNGPLPDPSMIRGSVPNQ-MMPRITPQSGLNQFGQMSMAQPPIVPR 728

Query: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGY---DRPY 314
           Q PP Q+ GQ          G   PP G   +     +      Q  +P QG    + P 
Sbjct: 729 QTPPLQHHGQ------LAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVTNIPL 782

Query: 315 EDSSQHYYEGGNSQYGQQQDAYQG--------PPPQQG---YPPQQQQYPGQQGYP---- 359
             SS      G +   Q Q +           PP  QG   + PQ  Q    Q  P    
Sbjct: 783 APSS------GQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVP 836

Query: 360 -------------GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ-PGPP--QPPQQ 403
                        G QQ    +   P P  P  P G   Q     P Q P PP  Q PQQ
Sbjct: 837 SRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQLPQQ 896



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 58/218 (26%), Positives = 81/218 (37%), Gaps = 28/218 (12%)

Query: 9   RQRGKGEITPAAI---QKMLDDNNHLIQCIMDSQNKGKTSECSQYQQML--------HTN 57
           R++  GE+    +   + M +  NH+  C   S    + + C+  +Q++        H  
Sbjct: 354 REQANGEVRQCNLPHCRTMKNVLNHMTHC--QSGKSCQVAHCASSRQIISHWKNCTRHDC 411

Query: 58  LVYLATI-ADSNQNMQSLLP-APPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGGP 114
            V L    A   +N Q +L  AP     P   G   QS P     S   PS         
Sbjct: 412 PVCLPLKNAGDKRNQQPILTGAPVGLGNPSSLGVGQQSAPNLSTVSQIDPSSIERAYAAL 471

Query: 115 PAPHMQNQM--NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS--S 170
             P+  NQM    Q+   N    Q PG +   M   S NM +S  G  GG     PS  S
Sbjct: 472 GLPYQVNQMPTQPQVQAKNQQNQQ-PGQSPQGMRPMS-NMSASPMGVNGGVGVQTPSLLS 529

Query: 171 QSM-----PVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
            SM       QN M MS+   + + GP P  +     G
Sbjct: 530 DSMLHSAINSQNPM-MSENASVPSLGPMPTAAQPSTTG 566



 Score = 30.0 bits (66), Expect = 4.1
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 67  SNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
           + Q   + +PAP      M PG  +Q+  PPP ++            PP   +  Q+   
Sbjct: 851 AQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPT----------PPTTQLPQQVQPS 900

Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
           +P           P     T +S+  P++           +P   + P+       +GQ 
Sbjct: 901 LPAAPSADQPQQQPRSQQSTAASVPTPTAP---------LLPPQPATPLSQPAVSIEGQV 951

Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNM 217
                P    S + N   +  +Q PSQ+  M
Sbjct: 952 S---NPPSTSSTEVNSQAIAEKQ-PSQEVKM 978


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)

Query: 88  GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
           GG  + GP P P     PS G + G  P P+P   + M G  PGP    + +P QGPG  
Sbjct: 9   GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64

Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
            Q NM    M+ P  S    G            P  NQM   +G  M + G   +  M P
Sbjct: 65  PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108

Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
              PM      SQ Y  P GG +H     P  G     Q++ G          P   P  
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155

Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
           G   Q  GQ++          +GP P   NQ +          Q  +Y      +P  D 
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199

Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
            Q   +G     G QQ     PPP           PG    PG   G GP   GPGP  P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247

Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
           NY +  G   GG     PGP         QPP   P  + +G   N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 27  DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
           DN H +   M+S ++   S+  +Y QM                           + M M 
Sbjct: 67  DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99

Query: 87  PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
            GG    GPPP P     + +  P  G      P P        QM  GP   P+ G  P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159

Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
             L   N      + N        +  Y        +P    M VQ +  M   Q     
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219

Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
            P P++S       P  GP     P    Y+ P G G       PP G  G V  G  M 
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273

Query: 246 GQRQIPPYRPPQQGP 260
           GQ   PP  PP+  P
Sbjct: 274 GQ---PPGGPPKPWP 285



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)

Query: 67  SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
           S  +M    P PP+   P+   GPGG       P    H M  P + M   G       N
Sbjct: 38  SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91

Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
           QM G   G       G GP    M   S   PS     +GG  H+   VP+S        
Sbjct: 92  QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145

Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
            +   G P+   G  P    Q N+GP    Q    Q        +     QP    +   
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203

Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
            QG   M   Q+Q+P   PP             GP          Y   +  GG   P  
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261

Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
                 P G +      P  P  G  +P+ +          S           G+   A 
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315

Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
              PP      P Q Q PGQ   P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PAPP  + P G GG N   PPP P        G   GGPP P                  
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285

Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
           +GP  N    T++   + P    G       +VP + S PV    T S GQP     P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341

Query: 195 NMSMQPNQGPMMHQQPP 211
            + +   Q  +   Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 91/333 (27%), Positives = 116/333 (34%), Gaps = 53/333 (15%)

Query: 84  PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
           P  PG M   GP P P     PS G + G  P P       G  PG  H  M GP P   
Sbjct: 4   PTDPGAMPHPGPSPGPG----PSPGPILGPSPGP-------GPSPGSVH-SMMGPSPGPP 51

Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
           ++++    M S+     G +    P            +  G   G     P+  M P Q 
Sbjct: 52  SVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQS 111

Query: 204 PM-MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
           PM  H Q     +  P G  +H                 + M G    PP  PP Q P  
Sbjct: 112 PMDQHSQGYMSPHPSPLGAPEHV---------------SSPMSGGGPTPPQMPPSQ-PGA 155

Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY 322
              G         S   +GP       + P   +    Q  +Y      +P  ++ Q   
Sbjct: 156 LIPGDP----QAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206

Query: 323 EGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQQ-GYPGQQQGYGPS------QGGPG 373
           +G  +  G  QQQ   Q    QQ    QQQQ P QQ   P  QQ   P+        GPG
Sbjct: 207 QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPG 266

Query: 374 PQY--PNYPQGQGQQYGGYRPTQPGPP---QPP 401
           P+   P+ PQ       G RP+ P PP   QPP
Sbjct: 267 PELSGPSTPQKLPVPAPGGRPS-PAPPAAAQPP 298



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 90/365 (24%), Positives = 112/365 (30%), Gaps = 92/365 (25%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ------------- 122
           P+P + +  MGP       P PP  SH MP+ G         H  ++             
Sbjct: 35  PSPGSVHSMMGPS------PGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVED 88

Query: 123 -MNGQMPGPN-HMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNH-SVPSSQSMPVQNQM 179
              G M G     P  G GP Q  M   S    S     +G   H S P S   P   QM
Sbjct: 89  IHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQM 148

Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
             S  QP       P    QPN+GP      P     + Q   Q    +    G      
Sbjct: 149 PPS--QPGALIPGDPQAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPET 201

Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
               + G+R +P  +  QQ   QQ   Q+     Q     Q PP+   QQ          
Sbjct: 202 LQLAVQGKRTLPGLQQQQQ-QQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ---------- 250

Query: 300 YQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 359
            QQP+     Y+RP                        GP P+   P   Q+ P      
Sbjct: 251 QQQPAL--VNYNRP-----------------------SGPGPELSGPSTPQKLP------ 279

Query: 360 GQQQGYGPSQGG-PGPQYPNYPQGQGQQYGGYRPTQPGPPQP--------------PQQR 404
                  P+ GG P P  P   Q       G    QP P QP              P Q+
Sbjct: 280 ------VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK 333

Query: 405 PYGYD 409
           P G D
Sbjct: 334 PQGLD 338



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
           S L AP   + PM  GG      PP      +P D         G  P +P   +Q+  Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185

Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
           +     +    P P  L +             ++ G        Q    Q Q    Q Q 
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238

Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
                P+P    Q        QQP    YN P G G    G   P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 91/333 (27%), Positives = 116/333 (34%), Gaps = 53/333 (15%)

Query: 84  PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
           P  PG M   GP P P     PS G + G  P P       G  PG  H  M GP P   
Sbjct: 4   PTDPGAMPHPGPSPGPG----PSPGPILGPSPGP-------GPSPGSVH-SMMGPSPGPP 51

Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
           ++++    M S+     G +    P            +  G   G     P+  M P Q 
Sbjct: 52  SVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQS 111

Query: 204 PM-MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
           PM  H Q     +  P G  +H                 + M G    PP  PP Q P  
Sbjct: 112 PMDQHSQGYMSPHPSPLGAPEHV---------------SSPMSGGGPTPPQMPPSQ-PGA 155

Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY 322
              G         S   +GP       + P   +    Q  +Y      +P  ++ Q   
Sbjct: 156 LIPGDP----QAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206

Query: 323 EGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQQ-GYPGQQQGYGPS------QGGPG 373
           +G  +  G  QQQ   Q    QQ    QQQQ P QQ   P  QQ   P+        GPG
Sbjct: 207 QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPG 266

Query: 374 PQY--PNYPQGQGQQYGGYRPTQPGPP---QPP 401
           P+   P+ PQ       G RP+ P PP   QPP
Sbjct: 267 PELSGPSTPQKLPVPAPGGRPS-PAPPAAAQPP 298



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 90/365 (24%), Positives = 112/365 (30%), Gaps = 92/365 (25%)

Query: 76  PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ------------- 122
           P+P + +  MGP       P PP  SH MP+ G         H  ++             
Sbjct: 35  PSPGSVHSMMGPS------PGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVED 88

Query: 123 -MNGQMPGPN-HMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNH-SVPSSQSMPVQNQM 179
              G M G     P  G GP Q  M   S    S     +G   H S P S   P   QM
Sbjct: 89  IHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQM 148

Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
             S  QP       P    QPN+GP      P     + Q   Q    +    G      
Sbjct: 149 PPS--QPGALIPGDPQAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPET 201

Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
               + G+R +P  +  QQ   QQ   Q+     Q     Q PP+   QQ          
Sbjct: 202 LQLAVQGKRTLPGLQQQQQ-QQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ---------- 250

Query: 300 YQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 359
            QQP+     Y+RP                        GP P+   P   Q+ P      
Sbjct: 251 QQQPAL--VNYNRP-----------------------SGPGPELSGPSTPQKLP------ 279

Query: 360 GQQQGYGPSQGG-PGPQYPNYPQGQGQQYGGYRPTQPGPPQP--------------PQQR 404
                  P+ GG P P  P   Q       G    QP P QP              P Q+
Sbjct: 280 ------VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK 333

Query: 405 PYGYD 409
           P G D
Sbjct: 334 PQGLD 338



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)

Query: 73  SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
           S L AP   + PM  GG      PP      +P D         G  P +P   +Q+  Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185

Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
           +     +    P P  L +             ++ G        Q    Q Q    Q Q 
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238

Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
                P+P    Q        QQP    YN P G G    G   P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 89/360 (24%), Positives = 126/360 (35%), Gaps = 44/360 (12%)

Query: 83  MPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHM--QNQMNGQMPGPNHMPMQGPGP 140
           +P  P  + Q+ PPPPP     P   +    P  P +  Q+  +   P   HMP Q   P
Sbjct: 309 LPTQPPVVPQAPPPPPPPPQQQPIRSLFQPQPLQPLLPVQHPHHPSPPQGMHMPPQLETP 368

Query: 141 NQLNMTNSSMN--MPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM 198
             + MT   +    P + H      N     +   PVQ  +     QP    GP+     
Sbjct: 369 RMM-MTPPPVTPQQPKNIH-----INPHFKGTVVTPVQVPLLPVPSQPRPAVGPQRFPG- 421

Query: 199 QPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP---------MGMMGQVNQGNHMMGQRQ 249
            P + P     P    ++ P       Q + PP         +G+ G+    +H+  +++
Sbjct: 422 -PPEFPQHTPGPVPNSFSQPPRLPLQDQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQR 480

Query: 250 IPPYRPP-------QQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYP--DGHNDYGY 300
            PP  PP           P Q        G  ++  GQ P     +   P        G 
Sbjct: 481 SPPPPPPPPTLLNSSHPVPTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPPGPVGI 540

Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQY--GQQQDAYQGP------PPQQGYPPQQQQY 352
              S P     RP+    Q +  G    +     Q   QGP      PP Q  P Q QQ 
Sbjct: 541 LHFSQPGSATTRPFIPPRQPFLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQPQPQQPQQQ 600

Query: 353 PGQQGYPGQQQGYGPS-QGGPGPQYP--NYPQGQGQQYGGYRPTQPGPPQP---PQQRPY 406
           P  Q  P  Q  + P  Q  P PQ+P  + PQ Q   +  +    P P  P   PQ RP+
Sbjct: 601 PPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPH 660



 Score = 32.3 bits (72), Expect = 0.82
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 72  QSLLPAP-----PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
           Q  LP P     PT   P   G ++   PPP       P        PP  H        
Sbjct: 559 QPFLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQPQPQQPQQQ-----PPPQHQPPHQPPH 613

Query: 127 MPGPNHM-----PMQGPGPNQLNMTNSSMNMPSSSHGSMG--GYNHSVPSSQSMPVQNQM 179
            P P H      P Q P  +Q +  +  +++P      M    +   V ++Q     ++M
Sbjct: 614 QPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRM 673

Query: 180 TMSQGQPMGNYGPRPNMSMQPNQ 202
              Q Q + +     N+S +P Q
Sbjct: 674 QCPQRQGLRHNTTSQNVSKRPMQ 696


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 76/285 (26%), Positives = 96/285 (33%), Gaps = 36/285 (12%)

Query: 146 TNSSMNMPSSSHGS---MGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQ 202
           +N      + S+G+     G  +S  SSQ    Q+    SQ      YG     S   +Q
Sbjct: 3   SNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQ 62

Query: 203 GPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
                 Q   Q Y    G    Y   Q      GQ         Q   P Y   QQ  P 
Sbjct: 63  NTGYGTQSTPQGYGSTGG----YGSSQSSQSSYGQ---------QSSYPGYG--QQPAPS 107

Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSY-PEQGYDRPYEDSSQHY 321
             SG    YG        G P+  +    P     YG QQ SY  +Q Y+ P     Q+ 
Sbjct: 108 STSGS---YGSSSQSSSYGQPQSGSYSQQPS----YGGQQQSYGQQQSYNPPQGYGQQNQ 160

Query: 322 YE---------GGNSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGG 371
           Y          GG   YGQ Q +   G     GY  Q Q   G  G  GQQ   G  +GG
Sbjct: 161 YNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGG 220

Query: 372 PGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNY 416
            G        G  +  GGY P   G  +  +    G D+G +  +
Sbjct: 221 SGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKF 265



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 72/236 (30%), Positives = 77/236 (32%), Gaps = 47/236 (19%)

Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
           Q   +YG  P    QP QG   + Q  SQ Y     G Q Y G        G        
Sbjct: 9   QATQSYGAYPT---QPGQG---YSQQSSQPY-----GQQSYSGYSQSTDTSGYGQSSYSS 57

Query: 245 MGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPS 304
            GQ Q   Y    Q  PQ Y     Y   Q S    G                   QQ S
Sbjct: 58  YGQSQNTGYGT--QSTPQGYGSTGGYGSSQSSQSSYG-------------------QQSS 96

Query: 305 YPEQGYD-RPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQ 363
           YP  G    P   S  +     +S YGQ         PQ G   QQ  Y GQQ   GQQQ
Sbjct: 97  YPGYGQQPAPSSTSGSYGSSSQSSSYGQ---------PQSGSYSQQPSYGGQQQSYGQQQ 147

Query: 364 GYGPSQG-GPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
            Y P QG G   QY +   G G   GG    Q            G   G YGN  Q
Sbjct: 148 SYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQ----DQSSMSSGGGSGGGYGNQDQ 199



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 26/221 (11%)

Query: 66  DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHN--MPSDGMVGGGPPAPHMQNQM 123
           D  Q       A PTQ    G G   QS  P   +S++    S    G G  +     Q 
Sbjct: 5   DYTQQATQSYGAYPTQP---GQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQS 61

Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS-VPSSQSMPV-QNQMTM 181
                G    P QG G      ++ S         S  GY     PSS S     +  + 
Sbjct: 62  QNTGYGTQSTP-QGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS 120

Query: 182 SQGQPM-GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
           S GQP  G+Y      S QP+ G         Q YN PQG GQ  Q      G  G    
Sbjct: 121 SYGQPQSGSY------SQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGG 174

Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG 281
           GN+  GQ          Q       G    YG+Q   GG G
Sbjct: 175 GNY--GQ---------DQSSMSSGGGSGGGYGNQDQSGGGG 204


>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
          Length = 166

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 63/145 (43%), Positives = 67/145 (46%), Gaps = 40/145 (27%)

Query: 280 QGPPEGMNQQYYP---DGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY 336
           QGPP G  QQ  P   DG+ D G QQ   P+QG                    GQQQ   
Sbjct: 47  QGPPLG-GQQSQPSAGDGNQDDGPQQGP-PQQG--------------------GQQQ--- 81

Query: 337 QGPPPQQGYPPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GY 390
           QGPPP QG P   Q  P Q G+P   QG   GP Q G  P+ P   PQG  QQ G   G 
Sbjct: 82  QGPPPPQGKP---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGP 138

Query: 391 RPTQPGPPQ-PPQQ--RPYGYDQGQ 412
            P  PG PQ PP Q  RP G  QGQ
Sbjct: 139 PPPPPGKPQGPPPQGGRPQGPPQGQ 163



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 48/142 (33%), Positives = 54/142 (38%), Gaps = 39/142 (27%)

Query: 183 QGQPMGNYGPRP-----NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGM-MG 236
           QG P+G    +P     N    P QGP             PQ GGQ  QG  PP G   G
Sbjct: 47  QGPPLGGQQSQPSAGDGNQDDGPQQGP-------------PQQGGQQQQGPPPPQGKPQG 93

Query: 237 QVNQGNH---MMGQRQIPPY-----RPPQ---QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
              QG H     G+ Q PP      RPP+   QGPPQQ   Q+         G   PP G
Sbjct: 94  PPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---------GPPPPPPG 144

Query: 286 MNQQYYPDGHNDYGYQQPSYPE 307
             Q   P G    G  Q   P+
Sbjct: 145 KPQGPPPQGGRPQGPPQGQSPQ 166



 Score = 34.7 bits (78), Expect = 0.17
 Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 78  PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
           PP Q  P GP    Q G PPPP+    P      GG P P         Q  G   GP  
Sbjct: 85  PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140

Query: 133 MP---MQGPGP 140
            P    QGP P
Sbjct: 141 PPPGKPQGPPP 151



 Score = 32.7 bits (73), Expect = 0.63
 Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 78  PPTQNMPMGPGGMNQSGPPPPPRS--HNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
           PP Q  P GP    Q G P PPR      P  G    GPP P        Q P P     
Sbjct: 102 PPPQGRPQGP--PQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKP---QGPPPQGGRP 156

Query: 136 QGPGPNQ 142
           QGP   Q
Sbjct: 157 QGPPQGQ 163



 Score = 32.3 bits (72), Expect = 0.82
 Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 79  PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ---MNGQMPGPNHMPM 135
           P Q  P   G   Q  PPP  +    P     GG PP P  + Q     G  P P     
Sbjct: 69  PQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPPQQGGHPRPPRGRP 125

Query: 136 QGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
           QGP     +        P    G    GG     P  QS
Sbjct: 126 QGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 76  PAPPTQNMPMGPG--GMNQSGPPPPP--RSHNMPSDGMVGGGPP 115
           P PP +  P GP   G +Q GPPPPP  +    P  G    GPP
Sbjct: 118 PRPP-RGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPP 160


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 105/395 (26%), Positives = 142/395 (35%), Gaps = 68/395 (17%)

Query: 76  PAPPTQNMPMG----PGGMNQSGPPPP-----PRSHNMPSD--GMVG-GGPPAPHMQNQM 123
           P PP ++   G    PG   Q+G P P     PR    P+   G+ G  G P        
Sbjct: 574 PGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGP 633

Query: 124 NGQMPGP-----NHMPMQGPGPNQLNMTNSSMNMPSS--------SHGSMGGYNHSVPSS 170
            G+ PGP     NH     PGP  L  T      P +        S G +G   H  P+ 
Sbjct: 634 PGE-PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTG 692

Query: 171 QSMPVQNQMTMSQGQPMGNYGPRP------NMSMQPNQGPMMHQQPPSQQYNMPQGGGQH 224
           +      Q       P G  GPR       N  +Q  +G       P  + ++   G Q 
Sbjct: 693 EKGA---QGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQG 749

Query: 225 Y------QGQQPPMGMMGQVNQGNH-----------MMGQRQIPPYRPPQQGPPQQ--YS 265
                  +G+  P G  GQ  Q               +G   +P Y P + GP     + 
Sbjct: 750 KPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGY-PGRPGPKGSIGFP 808

Query: 266 GQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGG 325
           G     G++   G  G P    ++  P    + G  QP     G   P  D  Q    G 
Sbjct: 809 GPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERG--QPG--ATGQPGPKGDVGQDGAPGI 864

Query: 326 NSQYGQQQDAYQGPP--PQQGYPPQQQQYPGQQGYPGQ--QQGYGPSQGGPGPQYPNYPQ 381
             + G      QGPP  P    PP  Q   G+ G+PGQ  + G+    G PGP     PQ
Sbjct: 865 PGEKGLP--GLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQ 922

Query: 382 GQGQQYG--GYRPTQPGPPQPPQQRPYGYDQGQYG 414
           G+  + G  G R   PGPP PP ++     +G+ G
Sbjct: 923 GKTGEVGPLGER-GPPGPPGPPGEQGLPGLEGREG 956



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 96/350 (27%), Positives = 125/350 (35%), Gaps = 69/350 (19%)

Query: 75  LPAPPTQNMPMGP-GGMNQSGPPPPPRSHNMPSDGMVGG-GPPAPHMQNQMNGQMPGPNH 132
           LP  P +    G  G + Q GPP          DG  G  GPP P  Q       PGP  
Sbjct: 555 LPGLPGEKGQRGDFGHVGQPGPPG--------EDGERGAEGPPGPTGQ----AGEPGPRG 602

Query: 133 M--PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
           +  P   PGP            P +  G++G      P     P Q     SQG P    
Sbjct: 603 LLGPRGSPGPTGRPGVTGIDGAPGAK-GNVGP-----PGEPGPPGQQGNHGSQGLP---- 652

Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ-HYQGQQPPMGMMGQVNQGNHMMGQRQ 249
           GP+  +     +GP  +   P     +P   G   + G + P G  G   QG        
Sbjct: 653 GPQGLIGTPGEKGPPGNPGIPG----LPGSDGPLGHPGHEGPTGEKGA--QG-------- 698

Query: 250 IPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQ----QPSY 305
                PP    P  Y G     G   + G QG      +  +P    D G +    +P  
Sbjct: 699 -----PPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGA 753

Query: 306 P-EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQG 364
           P  +G D P         EG   Q GQ  +  +GPP   G    +   PG  GYPG+   
Sbjct: 754 PGPRGEDGP---------EGPKGQAGQAGE--EGPPGSAG-EKGKLGVPGLPGYPGRPGP 801

Query: 365 YGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 414
            G S G PGP  P   +G+  + G  +P   G   PP  R    ++GQ G
Sbjct: 802 KG-SIGFPGPLGPIGEKGKSGKTG--QPGLEGERGPPGSRG---ERGQPG 845



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 95/352 (26%), Positives = 120/352 (34%), Gaps = 64/352 (18%)

Query: 84  PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG-PNHMPMQGPGPNQ 142
           P  PG     GP  PP     P D     GPP P         +PG P    ++GP P  
Sbjct: 394 PGAPGPQGVVGPSGPPGPPGFPGDP----GPPGP-------AGLPGIPGIDGIRGP-PGT 441

Query: 143 LNMTNSSMNMPSS-SHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPN 201
           + M      MP   + GS  G   S   +Q+  V  Q  +S   P G  G      +   
Sbjct: 442 VIM------MPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVG------LTGR 489

Query: 202 QGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNH--MMGQRQIP-------- 251
            GP+     P  +      G Q  +G Q P G  G+V +       G R +P        
Sbjct: 490 PGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGD 549

Query: 252 ------PYRPPQQGPPQQYS--GQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQP 303
                 P  P ++G    +   GQ    G+    G +GPP    Q   P      G    
Sbjct: 550 RGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLG---- 605

Query: 304 SYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQ 363
               +G   P         +G     G       GPP + G PP QQ   G QG PG Q 
Sbjct: 606 ---PRGSPGPTGRPGVTGIDGAPGAKGNV-----GPPGEPG-PPGQQGNHGSQGLPGPQG 656

Query: 364 GYG-PSQGGP--GPQYPNYPQGQGQ--QYGGYRPT-QPGPPQPP-QQRPYGY 408
             G P + GP   P  P  P   G     G   PT + G   PP    P GY
Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGY 708



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 91/370 (24%), Positives = 118/370 (31%), Gaps = 53/370 (14%)

Query: 76   PAPPTQNMPMGPGGMN-QSGPPPPPRSHNMPSD----GMVGG----------GPPAPHMQ 120
            P P       GP G+    GPP P  ++  P +    G  GG          GP  P  +
Sbjct: 979  PGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGK 1038

Query: 121  NQMNGQMPGPNHMPMQG-PGP-NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQ 178
                G+   P      G PGP   L    ++   PS   G  G      P  +       
Sbjct: 1039 KGSRGERGPPGPTGKDGIPGPLGPLGPPGAAG--PSGEEGDKGDVG--APGHKGSKGDKG 1094

Query: 179  MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHY---------QGQQ 229
                 GQP G  GP  +       G    + PP         G + +         QG  
Sbjct: 1095 DAGPPGQP-GIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLP 1153

Query: 230  PPMGMMGQVNQGNHMMGQRQIPPYRPPQ-----QGPPQQYSG--QEDYYGDQYSHGGQGP 282
             P G  G+V     M G    P  R PQ     +G P    G  Q    G++   G  G 
Sbjct: 1154 GPPGEKGEVGDVGSM-GPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGD 1212

Query: 283  PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS--SQHYYEGGNSQYGQQQDAYQGPP 340
            P        P    D G +  S P      P +     +   +G     G   D   GPP
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDL--GPP 1270

Query: 341  PQQGYPPQQQQYPGQQGYPGQQQGYGP-----SQGGPGPQYPNYPQG----QGQQYGGYR 391
               G        PG++G PG   G GP       G PGP     P G    +G++     
Sbjct: 1271 GDPGVSGIDGS-PGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGA 1329

Query: 392  PTQPGPPQPP 401
              +PGP  PP
Sbjct: 1330 KGEPGPDGPP 1339



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 85/365 (23%), Positives = 120/365 (32%), Gaps = 54/365 (14%)

Query: 76  PAPP-------TQNMPMGPGGM----NQSGPPPPPRSHNMP-SDGMVGGGPPAPHMQNQM 123
           P PP       +Q +P GP G+     + GPP  P    +P SDG +G  P       + 
Sbjct: 637 PGPPGQQGNHGSQGLP-GPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGH-PGHEGPTGEK 694

Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQ 183
             Q P  +  P   PGP  +  T+ +  +     G  G               +Q     
Sbjct: 695 GAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEK-GEKGEDGFPGFKGDVGLKGDQGKPGA 753

Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG------- 236
             P G  GP          G         ++  +   G   Y G+  P G +G       
Sbjct: 754 PGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGP 813

Query: 237 ------QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG----------- 279
                     G   +   + PP    ++G P   +GQ    GD    G            
Sbjct: 814 IGEKGKSGKTGQPGLEGERGPPGSRGERGQPGA-TGQPGPKGDVGQDGAPGIPGEKGLPG 872

Query: 280 -QGPP-----EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQ 333
            QGPP     +G       DG   +  Q+     QG   P   +     +G   + G   
Sbjct: 873 LQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLG 932

Query: 334 DAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQG-QGQQYGGYRP 392
           +  +GPP   G PP +Q  PG +G  G +   GP    PGP     P G +G       P
Sbjct: 933 E--RGPPGPPG-PPGEQGLPGLEGREGAKGELGP----PGPLGKEGPAGLRGFPGPKGGP 985

Query: 393 TQPGP 397
             PGP
Sbjct: 986 GDPGP 990



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 91/367 (24%), Positives = 116/367 (31%), Gaps = 72/367 (19%)

Query: 75   LPAPPTQNMP------MGP-GGMNQSGPPPPPRSHNMPSDGMVGG-GPPAPHMQNQMNGQ 126
            LP PP +         MGP G     GP  P  S   P  G+ GG G P    +    G 
Sbjct: 1152 LPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTP--GLPGGVGQPGAVGEKGERGD 1209

Query: 127  M--PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
               PGP   P   PGP                 G +G    S PS  + P   +    + 
Sbjct: 1210 AGDPGPPGAPGI-PGPK----------------GDIGEKGDSGPSGAAGPPGKKGPPGED 1252

Query: 185  QPMGNYGPR-----------PNMS-------MQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
               G+ GP            P +S        + + G +    PP       + G     
Sbjct: 1253 GAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGAS---GEPGAPGPP 1309

Query: 227  GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGM 286
            G++ P G MG+  +      + +  P  PP +  P    G     G +   G  GP    
Sbjct: 1310 GKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEP 1369

Query: 287  NQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYP 346
                 P      G   PS    G      D+     +G     G       GPP + G  
Sbjct: 1370 GLLGAPGQMGPPGPLGPS----GLPGLKGDTGPKGEKGHIGLIG-----LIGPPGEAG-E 1419

Query: 347  PQQQQYPGQQGYPGQQQGYGP-----SQGGPGPQYPNYPQGQGQQYGGYRPTQP------ 395
               Q  PG QG PG +   GP     S G PGP     P GQ    G      P      
Sbjct: 1420 KGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGP 1479

Query: 396  -GPPQPP 401
             GPP PP
Sbjct: 1480 AGPPGPP 1486



 Score = 32.7 bits (73), Expect = 0.63
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQP------GPPQPPQQ 403
           QQ+ G  G PG Q   GPS G PGP  P +P   G       P  P      GPP     
Sbjct: 388 QQFEGPPGAPGPQGVVGPS-GPPGP--PGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIM 444

Query: 404 RPYGYDQGQY 413
            P+ +  G +
Sbjct: 445 MPFQFAGGSF 454


>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
          Length = 166

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 62/145 (42%), Positives = 67/145 (46%), Gaps = 40/145 (27%)

Query: 280 QGPPEGMNQQYYP---DGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY 336
           QGPP G  QQ  P   DG+ + G QQ   P+QG                    GQQQ   
Sbjct: 47  QGPPLG-GQQSQPSAGDGNQNDGPQQGP-PQQG--------------------GQQQ--- 81

Query: 337 QGPPPQQGYPPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GY 390
           QGPPP QG P   Q  P Q G+P   QG   GP Q G  P+ P   PQG  QQ G   G 
Sbjct: 82  QGPPPPQGKP---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGP 138

Query: 391 RPTQPGPPQ-PPQQ--RPYGYDQGQ 412
            P  PG PQ PP Q  RP G  QGQ
Sbjct: 139 PPPPPGKPQGPPPQGGRPQGPPQGQ 163



 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 49/150 (32%), Positives = 56/150 (37%), Gaps = 43/150 (28%)

Query: 171 QSMPVQNQMTM-SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
           Q  P+  Q +  S G    N GP+        QGP             PQ GGQ  QG  
Sbjct: 47  QGPPLGGQQSQPSAGDGNQNDGPQ--------QGP-------------PQQGGQQQQGPP 85

Query: 230 PPMGM-MGQVNQGNH---MMGQRQIPPY-----RPPQ---QGPPQQYSGQEDYYGDQYSH 277
           PP G   G   QG H     G+ Q PP      RPP+   QGPPQQ   Q+         
Sbjct: 86  PPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ--------- 136

Query: 278 GGQGPPEGMNQQYYPDGHNDYGYQQPSYPE 307
           G   PP G  Q   P G    G  Q   P+
Sbjct: 137 GPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166



 Score = 34.7 bits (78), Expect = 0.17
 Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 78  PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
           PP Q  P GP    Q G PPPP+    P      GG P P         Q  G   GP  
Sbjct: 85  PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140

Query: 133 MP---MQGPGP 140
            P    QGP P
Sbjct: 141 PPPGKPQGPPP 151



 Score = 33.1 bits (74), Expect = 0.48
 Identities = 32/112 (28%), Positives = 35/112 (31%), Gaps = 14/112 (12%)

Query: 66  DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ--- 122
           D NQN        P Q  P   G   Q  PPP  +    P     GG PP P  + Q   
Sbjct: 62  DGNQN------DGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPP 112

Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
             G  P P     QGP     +        P    G    GG     P  QS
Sbjct: 113 QQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,683,351
Number of Sequences: 37866
Number of extensions: 1966380
Number of successful extensions: 17397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 908
Number of HSP's that attempted gapping in prelim test: 7905
Number of HSP's gapped (non-prelim): 5354
length of query: 418
length of database: 18,247,518
effective HSP length: 105
effective length of query: 313
effective length of database: 14,271,588
effective search space: 4467007044
effective search space used: 4467007044
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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