Guide to the Human Genome
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Search of human proteins with 55743140

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55743140 WW domain binding protein 5 [Homo sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55743140 WW domain binding protein 5 [Homo sapiens]                218   1e-57
gi|55743147 WW domain binding protein 5 [Homo sapiens]                218   1e-57
gi|10047100 WW domain binding protein 5 [Homo sapiens]                218   1e-57
gi|55743145 WW domain binding protein 5 [Homo sapiens]                218   1e-57
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo...    81   2e-16
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo...    81   2e-16
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo...    81   2e-16
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo...    77   4e-15
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo...    77   4e-15
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo...    69   6e-13
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo...    63   4e-11
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo...    63   4e-11
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo...    63   4e-11
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo...    63   4e-11
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo...    62   1e-10
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom...    49   6e-07
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo...    49   8e-07
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo...    47   2e-06
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo...    47   2e-06
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    43   6e-05
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    42   1e-04
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    42   1e-04
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]            40   3e-04
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    38   0.001
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H...    37   0.003
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H...    37   0.003
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap...    37   0.003
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap...    37   0.003
gi|17975763 myelin transcription factor 1 [Homo sapiens]               37   0.003
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          37   0.003

>gi|55743140 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score =  218 bits (554), Expect = 1e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
           MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60

Query: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
           HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104


>gi|55743147 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score =  218 bits (554), Expect = 1e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
           MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60

Query: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
           HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104


>gi|10047100 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score =  218 bits (554), Expect = 1e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
           MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60

Query: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
           HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104


>gi|55743145 WW domain binding protein 5 [Homo sapiens]
          Length = 104

 Score =  218 bits (554), Expect = 1e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
           MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60

Query: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
           HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61  HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104


>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)

Query: 20  EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
           E  P  E+ P    + KLEE     G+F+ERL +S  +F+ DIH R+LSNE+M +  DE+
Sbjct: 80  EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134

Query: 78  DEIRRVRNKLIVMRWKVNRNHPYP 101
           +E++RVRNKL++M WK  R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158


>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)

Query: 20  EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
           E  P  E+ P    + KLEE     G+F+ERL +S  +F+ DIH R+LSNE+M +  DE+
Sbjct: 80  EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134

Query: 78  DEIRRVRNKLIVMRWKVNRNHPYP 101
           +E++RVRNKL++M WK  R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158


>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
           sapiens]
          Length = 159

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)

Query: 20  EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
           E  P  E+ P    + KLEE     G+F+ERL +S  +F+ DIH R+LSNE+M +  DE+
Sbjct: 80  EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134

Query: 78  DEIRRVRNKLIVMRWKVNRNHPYP 101
           +E++RVRNKL++M WK  R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158


>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
           sapiens]
          Length = 117

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60

Query: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112


>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
           sapiens]
          Length = 117

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55
           KSC++ EGKP+N   PK EE+   E+ P+E E   +  EE    +A+G  R    Q  Q 
Sbjct: 3   KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60

Query: 56  FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101
           FKED   RHL  E+M R VDE++    EIRRVRNK ++M WK   +R+ PYP
Sbjct: 61  FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112


>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
           sapiens]
          Length = 100

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 15/106 (14%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
           K C++ EGKP+     + E+ P  E + ++ E         G FR+RL+QSL+EFKEDI 
Sbjct: 3   KPCKENEGKPKCSVPKREEKRPYGEFERQQTE---------GNFRQRLLQSLEEFKEDID 53

Query: 62  NRHLSNEDMFREVDE----IDEIRRVRNKLIVM--RWKVNRNHPYP 101
            RH  +E+M RE DE    ++EIR +R K   +    + +R+ PYP
Sbjct: 54  YRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYP 99


>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143

Query: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48


>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143

Query: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48


>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143

Query: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48


>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 1   MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
           M+   + EGKPE E +P+ E EP  E +   +   E++   KAK    + L   L+E+KE
Sbjct: 84  MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143

Query: 59  DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
            IH+ + SNEDM RE D +    DE R+ + KL    W + RN   P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)

Query: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
          EG   N+ + ++EE+P+ E KPE     E++KLE E K +
Sbjct: 9  EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48


>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
           sapiens]
          Length = 227

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 8   EGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKEDIHNRHL 65
           EG+P++E EP+ E EP+ E +   +   E++   KAK    + L Q L+++KE IH+ + 
Sbjct: 103 EGEPDSEREPESEGEPESETRAAGKRPAEDDIPRKAKRKTNKGLAQYLKQYKEAIHDMNF 162

Query: 66  SNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
           SNEDM RE D +    D+ R+ + KL    W + RN   P+
Sbjct: 163 SNEDMIREFDNMARVEDKRRKSKQKLGAFLW-MQRNLQDPF 202



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 8  EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAKGT 44
          EG P N+ +  +EE+P  E KPE     E++KLE E   + T
Sbjct: 9  EGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENT 50



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 5  QKMEGKPENESEPKHEEEP-KPEEKPEEEEKLEEEAKAK 42
          +K+E +   E+  K  EEP K +EKPE   K + E K++
Sbjct: 39 KKLENEGNTENTGKRVEEPLKDKEKPESAGKAKGEGKSE 77


>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
           sapiens]
          Length = 183

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
           K  Q+ +GK E E +P+ E +P  + KPE + +  E+         KAK         S 
Sbjct: 63  KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122

Query: 54  QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
           ++ +ED+  RHLS+E+M RE   V    E  R + K+    W
Sbjct: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
          K   K EG  ENE +P+ E EP  E K +EEEK + E K +
Sbjct: 3  KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 8  EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
          EGKPE+E EP  E +   EEKP+ E K E E K K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49


>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
           sapiens]
          Length = 206

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSLQEF 56
           Q+ +GK E E +P+ E +P  + KPE + +  E+         KAK         S ++ 
Sbjct: 72  QEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 131

Query: 57  KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
           +ED+  RHLS+E+M RE   V    E  R + K+    W
Sbjct: 132 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 170



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
          K  ++ EGKPENE   + E +P+ E   E+E K +EE K
Sbjct: 3  KLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEK 41



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 8  EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
          EGKPE+E   + E +   EEKP+ E K E E K
Sbjct: 21 EGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGK 53



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 12 ENESEPKHEEEPKPEEKPEEEEKLEEEAKA 41
          ENE +P++E   + E KPE+E   E+E K+
Sbjct: 7  ENEGKPENERNLESEGKPEDEGSTEDEGKS 36


>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--------KAKGTFRERLIQSLQEF 56
           Q+ +G+ E E +P+ E +P  + KPE + +  E+         KAK         S ++ 
Sbjct: 66  QEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 125

Query: 57  KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
           +ED+  RHLS+E+M RE   V    E  R + K+    W
Sbjct: 126 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164



 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
          K   K EG  ENE +P+ E EP  E K +EEEK + E K +
Sbjct: 3  KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTE 43



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 8  EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
          EGKPE+E EP  E +   EEKP+ E K E E K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGK 47


>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
           sapiens]
          Length = 200

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--------KAKGTFRERLIQSLQEF 56
           Q+ +G+ E E +P+ E +P  + KPE + +  E+         KAK         S ++ 
Sbjct: 66  QEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 125

Query: 57  KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
           +ED+  RHLS+E+M RE   V    E  R + K+    W
Sbjct: 126 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164



 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
          K   K EG  ENE +P+ E EP  E K +EEEK + E K +
Sbjct: 3  KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTE 43



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 8  EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
          EGKPE+E EP  E +   EEKP+ E K E E K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGK 47


>gi|155030232 proline, glutamic acid and leucine rich protein 1
           [Homo sapiens]
          Length = 1130

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
           ++ E + E E E + EEE   EE+ +EEE  EEE + +  F E   +   E +E+     
Sbjct: 891 EEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEED 950

Query: 65  LSNEDMFREVDEID 78
              E+   EV++++
Sbjct: 951 EEEEEELEEVEDLE 964



 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 12  ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMF 71
           + E E + EEE + EE+ EEEE  EEE + +  + E   +  +EF+E+        E+  
Sbjct: 887 DEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEE 946

Query: 72  REVDEIDE 79
            E DE +E
Sbjct: 947 EEEDEEEE 954


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 3    SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHN 62
            S  + +   E E E K EEE + EE+ EEEE   +++K+ G  R+++ + L++ K     
Sbjct: 1396 SSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTET 1455

Query: 63   RHLSNEDMFREVDEIDEIRRVRNKL 87
            ++   E+  R    I E  R R KL
Sbjct: 1456 QNALKEEEERR-KRIAEREREREKL 1479



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/83 (24%), Positives = 39/83 (46%)

Query: 6    KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHL 65
            K   + E E + + EEE + EE+ EE+E  + ++  KG  + R I    + + +  N   
Sbjct: 1401 KSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALK 1460

Query: 66   SNEDMFREVDEIDEIRRVRNKLI 88
              E+  + + E +  R    ++I
Sbjct: 1461 EEEERRKRIAEREREREKLREVI 1483


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 3    SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHN 62
            S  + +   E E E K EEE + EE+ EEEE   +++K+ G  R+++ + L++ K     
Sbjct: 1434 SSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTET 1493

Query: 63   RHLSNEDMFREVDEIDEIRRVRNKL 87
            ++   E+  R    I E  R R KL
Sbjct: 1494 QNALKEEEERR-KRIAEREREREKL 1517



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 20/83 (24%), Positives = 39/83 (46%)

Query: 6    KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHL 65
            K   + E E + + EEE + EE+ EE+E  + ++  KG  + R I    + + +  N   
Sbjct: 1439 KSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALK 1498

Query: 66   SNEDMFREVDEIDEIRRVRNKLI 88
              E+  + + E +  R    ++I
Sbjct: 1499 EEEERRKRIAEREREREKLREVI 1521


>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
           + C   +G P  E E + EEE   EE+ EEE++ +EE + K   +E       E +E+  
Sbjct: 108 EECSAQQGLPVEEEEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKEE-----DEEEEEKE 162

Query: 62  NRHLSNEDMFREVDEIDEIRRVR 84
            + +  E +  E+D   EI+R +
Sbjct: 163 GKKMEEEKVEEEID--TEIQRTQ 183


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
          sapiens]
          Length = 123

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
          K  ++ E K + + + K EEE + EE+ EEEE+ EEE K +G  R++
Sbjct: 53 KEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKK 99



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
           +K + K + E E + EEE + EE+ EEEEK E   + K   R R
Sbjct: 62  RKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRR 105



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 2  KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
          K  +  E +   E+E + E+E K +EK +E+ K E+E K K    E+  +  +E K+   
Sbjct: 6  KKKETEETEETEETEEEEEKEGKRKEKRKEKRK-EKEKKKKTKETEKRKEKEEEEKKRKR 64

Query: 62 NRHLSNEDMFREVDEIDE 79
           R    E+  RE +E +E
Sbjct: 65 KRKKKKEEEEREEEEEEE 82



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 13/82 (15%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
           ++ E + E E + K +E  K +EK EEE+K + + K K    ER     +E +E+     
Sbjct: 32  KRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEER-----EEEEEE----- 81

Query: 65  LSNEDMFREVDEIDEIRRVRNK 86
              E+  +E +E +E RR + K
Sbjct: 82  ---EEEEKEEEEKEEGRRRKKK 100



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
           +K + K + + E +  EE + EE+ E+EE+ +EE + +   ++R  +  +E K+    R
Sbjct: 60  KKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRR 118



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
           K  ++ E + E E E K  +  + ++K EEE + EEE + +        +  +E KE+  
Sbjct: 44  KKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEE--------EKEEEEKEEGR 95

Query: 62  NRHLSNEDMFREVDEIDEIRRVR 84
            R    +   +E +E  + +R R
Sbjct: 96  RRKKKKKRRRKEEEEEKKKKRRR 118



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 14 ESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFRE 73
          + + K +E  + EE  E EE+ E+E K K        +  +E +++   +  + E   R+
Sbjct: 2  KKKKKKKETEETEETEETEEEEEKEGKRK--------EKRKEKRKEKEKKKKTKETEKRK 53

Query: 74 VDEIDEIRRVRNK 86
            E +E +R R +
Sbjct: 54 EKEEEEKKRKRKR 66



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
           ++ E + E E E + +EE +  +K ++  + EEE + K   R +
Sbjct: 76  EEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRRK 119


>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
           sapiens]
          Length = 299

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 6   KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLI----QSLQEFKEDIH 61
           KM+ + E E EP+ E E +PE  PEE E   E    + +F+E  +     S QE KE   
Sbjct: 20  KMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAAL 79

Query: 62  NRHLSNEDMFREVDEIDEIRR 82
              +S      E+ E++   R
Sbjct: 80  TSTISLRAQGAEISEMNSPSR 100


>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
           sapiens]
          Length = 1251

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 6   KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLI----QSLQEFKEDIH 61
           KM+ + E E EP+ E E +PE  PEE E   E    + +F+E  +     S QE KE   
Sbjct: 20  KMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAAL 79

Query: 62  NRHLSNEDMFREVDEIDEIRR 82
              +S      E+ E++   R
Sbjct: 80  TSTISLRAQGAEISEMNSPSR 100



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 7   MEGKPENESEPKHEEEPKPEEKPEEEEKLEEE 38
           +E  P   S  + E+E + EE+ EEEE+ EEE
Sbjct: 340 VEKMPRELSRIEEEKEDEEEEEEEEEEEEEEE 371



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 10  KPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
           +P++ S+ K  EE   E K E EEK +EEA+
Sbjct: 396 RPQSTSDQKLWEEVGEEAKKEAEEKAKEEAE 426



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2   KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEK 34
           K+ +KM  +     E K +EE + EE+ EEEE+
Sbjct: 338 KAVEKMPRELSRIEEEKEDEEEEEEEEEEEEEE 370



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 14  ESEPKHEEEPKPEEKPEEEEKLEE 37
           E E + EEE + EE+ EEEE++ E
Sbjct: 351 EEEKEDEEEEEEEEEEEEEEEVTE 374



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 15  SEPKHEEEPKPEEKPEEEEKLEEE 38
           S  K   EP P+ KP E E +EEE
Sbjct: 601 SPAKKAPEPAPDTKPAEAEPVEEE 624



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKG 43
           +K + + E  +E + E+EP+   + +EE + E EA + G
Sbjct: 419 EKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSG 457


>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 432

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 5   QKMEGKPENESEPKHEEEPK----PEEKPEEEEKLEEEAKAKGTFRERLIQSL-----QE 55
           ++ E +   + E  HE+E +     E   E+EE+L E+ K  G  +ERL++ +     QE
Sbjct: 202 REQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPG--QERLLEEVEKLLEQE 259

Query: 56  FKEDIHNRHLSNEDMFREVDEIDEIRRVRNK 86
            +++   R L  E +  EV+E+ E  R+R +
Sbjct: 260 RRQEEQERLLERERLLDEVEELLEQERLRQQ 290



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 4   CQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
           C++ E   E E  P  E   +  EK  E+E+ +EE + +   RERL+  ++E  E    R
Sbjct: 230 CEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEE-QERLLERERLLDEVEELLEQERLR 288

Query: 64  ----HLSNEDMFREVDEIDEIRRV 83
                L  ++  RE++ + E+ R+
Sbjct: 289 QQDERLWQQETLRELERLRELERM 312


>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 479

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 5   QKMEGKPENESEPKHEEEPK----PEEKPEEEEKLEEEAKAKGTFRERLIQSL-----QE 55
           ++ E +   + E  HE+E +     E   E+EE+L E+ K  G  +ERL++ +     QE
Sbjct: 237 REQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPG--QERLLEEVEKLLEQE 294

Query: 56  FKEDIHNRHLSNEDMFREVDEIDEIRRVRNK 86
            +++   R L  E +  EV+E+ E  R+R +
Sbjct: 295 RRQEEQERLLERERLLDEVEELLEQERLRQQ 325



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 4   CQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
           C++ E   E E  P  E   +  EK  E+E+ +EE + +   RERL+  ++E  E    R
Sbjct: 265 CEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEE-QERLLERERLLDEVEELLEQERLR 323

Query: 64  ----HLSNEDMFREVDEIDEIRRVR 84
                L  ++  RE++ + E+ R+R
Sbjct: 324 QQDERLWQQETLRELERLRELERLR 348



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
           ++ E +   + E  HE+E   E   E+EE+L E+ +      ERL +  +  +E     H
Sbjct: 195 RRQEERLREQEERLHEQE---ERLHEQEERLCEQEERLCEQEERLREQEERLREQEERLH 251

Query: 65  LSNEDMFREVDEIDE 79
              E +  + + + E
Sbjct: 252 EQEERLCEQEERLCE 266


>gi|17975763 myelin transcription factor 1 [Homo sapiens]
          Length = 1121

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 8   EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRE 47
           E + E E E + EEE + EE+ EEEE+ EEEA     F+E
Sbjct: 276 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 5   QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
           ++ E + E E E + EEE + EE+ EEEE+ EEE + +    E        F+ED
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQED 316



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 8   EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
           E   E E E + EEE + EE+ EEEE+ EEE + +    E   +  +E   D+
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDV 311



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 6   KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
           K +G   +E E + EEE + EE+ +EEE+ EEE + +    E   +  +E +E+
Sbjct: 250 KQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 303



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 12  ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
           E E E + EEE + EE  EEEE+ EEE + +    E   +  +E +E+
Sbjct: 258 EEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 305



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 3   SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE 38
           S ++ + + E E E + E+E + EE+ EEEE+ EEE
Sbjct: 256 SHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEE 291



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 12  ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNED 69
           E + E + EEE + E++ EEEE+ EEE + +    E   +  +E +E+     +  ED
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQED 316



 Score = 31.2 bits (69), Expect = 0.18
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 16  EPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFRE 73
           E + EEE + EE+ EE+E+ EEE + +    E   +  +E +E+      + + +F+E
Sbjct: 258 EEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 5   QKME-GKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQE 55
           +K+E  + E E E + EE  + EE+ EEEE+ EE+   KG F   L + L++
Sbjct: 454 EKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEEDEGCKGLFPSELDEELED 505


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,003,421
Number of Sequences: 37866
Number of extensions: 256363
Number of successful extensions: 10577
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 3777
Number of HSP's gapped (non-prelim): 4543
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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