TRIM38 32636

Name: TRIM38	Sequence: fasta or formatted (465aa)		NCBI GI: 5454014
Description: tripartite motif-containing 38		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.7 17 1 C cysteine 4.7 22 2 D aspartate 4.1 19 1 E glutamate 8.8 41 3 F phenylalanine 4.5 21 2 G glycine 5.6 26 1 H histidine 3.4 16 2 I isoleucine 2.6 12 1 K lysine 7.1 33 3 L leucine 10.8 50 2 M methionine 2.4 11 2 N asparagine 2.8 13 1 P proline 3.9 18 3 Q glutamine 6.9 32 2 R arginine 5.2 24 2 S serine 7.5 35 2 T threonine 7.1 33 2 V valine 4.9 23 2 W tryptophan 1.3 6 1 Y tyrosine 2.8 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 38 TRIM21 0.345 tripartite motif protein 21 TRIM58 0.345 tripartite motif-containing 58 TRIM39 0.321 tripartite motif-containing 39 isoform 2 TRIM11 0.308 tripartite motif-containing 11 TRIM39 0.306 tripartite motif-containing 39 isoform 1 TRIM6 0.287 tripartite motif-containing 6 isoform 2 TRIM6 0.287 tripartite motif-containing 6 isoform 1 TRIM68 0.286 ring finger protein 137 TRIM27 0.278 ret finger protein TRIM17 0.252 tripartite motif-containing 17 isoform 1 TRIM17 0.252 tripartite motif-containing 17 isoform 1 TRIM34 0.245 tripartite motif protein 34 isoform 1 TRIM34 0.245 tripartite motif protein 34 isoform 1 TRIM6-TRIM34 0.245 tripartite motif-containing 6 and tripartite motif-c... TRIM5 0.245 tripartite motif protein TRIM5 isoform alpha TRIM22 0.236 tripartite motif-containing 22 TRIM10 0.228 tripartite motif-containing 10 isoform 1 TRIM4 0.222 tripartite motif protein TRIM4 isoform beta TRIM17 0.222 tripartite motif-containing 17 isoform 2 TRIM60 0.218 ring finger protein 129 TRIM75 0.215 tripartite motif-containing 75 TRIM7 0.214 tripartite motif-containing 7 isoform 1 TRIM15 0.209 tripartite motif protein 15 TRIM4 0.207 tripartite motif protein TRIM4 isoform alpha TRIML1 0.204 tripartite motif family-like 1 TRIM26 0.197 tripartite motif-containing 26 TRIM41 0.191 tripartite motif-containing 41 isoform 1 MEFV 0.183 Mediterranean fever protein TRIM69 0.178 tripartite motif-containing 69 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.