Guide to the Human Genome
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Search of human proteins with 133908631

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
         (474 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|133908631 SWI/SNF-related matrix-associated actin-dependent r...   958   0.0  
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r...   938   0.0  
gi|21264353 SWI/SNF related, matrix associated, actin dependent ...   619   e-177
gi|51477704 SWI/SNF related, matrix associated, actin dependent ...   619   e-177
gi|51477702 SWI/SNF related, matrix associated, actin dependent ...   617   e-177
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r...   565   e-161
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r...   561   e-160
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    54   2e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    54   2e-07
gi|50428940 mediator complex subunit 25 [Homo sapiens]                 53   5e-07
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]              50   4e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      50   4e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     49   8e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    49   1e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    49   1e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    49   1e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    49   1e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    49   1e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    49   1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    49   1e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    49   1e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    49   1e-05
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    49   1e-05
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    49   1e-05
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b...    49   1e-05
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo...    48   2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      48   2e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05

>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin d1 isoform b [Homo sapiens]
          Length = 474

 Score =  958 bits (2476), Expect = 0.0
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
           MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
Sbjct: 1   MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60

Query: 61  PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
           PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
Sbjct: 61  PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120

Query: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
           HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
Sbjct: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180

Query: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
           KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
Sbjct: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240

Query: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
           VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
Sbjct: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300

Query: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
           LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
Sbjct: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360

Query: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
           LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
Sbjct: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420

Query: 421 DNKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
           DNKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
Sbjct: 421 DNKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474


>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin d1 isoform a [Homo sapiens]
          Length = 515

 Score =  938 bits (2424), Expect = 0.0
 Identities = 474/515 (92%), Positives = 474/515 (92%), Gaps = 41/515 (7%)

Query: 1   MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
           MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
Sbjct: 1   MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60

Query: 61  PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
           PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
Sbjct: 61  PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120

Query: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
           HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
Sbjct: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180

Query: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
           KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
Sbjct: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240

Query: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
           VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
Sbjct: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300

Query: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
           LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
Sbjct: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360

Query: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
           LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
Sbjct: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420

Query: 421 DNK-----------------------------------------TMTDVVGNPEEERRAE 439
           DNK                                         TMTDVVGNPEEERRAE
Sbjct: 421 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE 480

Query: 440 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
           FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
Sbjct: 481 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515


>gi|21264353 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score =  619 bits (1596), Expect = e-177
 Identities = 321/475 (67%), Positives = 371/475 (78%), Gaps = 61/475 (12%)

Query: 54  PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
           PG  +P     RPGM  G+RM  QG  MGPPG  Y G+P+VRPGLA +GM+ +RKR AP 
Sbjct: 3   PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62

Query: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
             Q   Q Q Q V     R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 63  PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122

Query: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
           IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182

Query: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
                  KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235

Query: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
           RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R  I+QALWQY+KT++LQD H++E++  D
Sbjct: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295

Query: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
           KY QQIF+  R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355

Query: 401 KTQMNSFLLSTASQQEIATLDN-------------------------------------- 422
           K QM+SFLLSTA+QQEI+ LD+                                      
Sbjct: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415

Query: 423 ---KTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
              K MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470


>gi|51477704 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score =  619 bits (1596), Expect = e-177
 Identities = 321/475 (67%), Positives = 371/475 (78%), Gaps = 61/475 (12%)

Query: 54  PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
           PG  +P     RPGM  G+RM  QG  MGPPG  Y G+P+VRPGLA +GM+ +RKR AP 
Sbjct: 3   PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62

Query: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
             Q   Q Q Q V     R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 63  PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122

Query: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
           IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182

Query: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
                  KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235

Query: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
           RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R  I+QALWQY+KT++LQD H++E++  D
Sbjct: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295

Query: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
           KY QQIF+  R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355

Query: 401 KTQMNSFLLSTASQQEIATLDN-------------------------------------- 422
           K QM+SFLLSTA+QQEI+ LD+                                      
Sbjct: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415

Query: 423 ---KTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
              K MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470


>gi|51477702 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 2
           [Homo sapiens]
          Length = 483

 Score =  617 bits (1592), Expect = e-177
 Identities = 318/464 (68%), Positives = 367/464 (79%), Gaps = 56/464 (12%)

Query: 60  RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP---QQIQQVQQQ 114
           RPGM  G+RM  QG  MGPPG  Y G+P+VRPGLA +GM+ +RKR AP   Q   Q Q Q
Sbjct: 27  RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86

Query: 115 AVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEA 171
            V     R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR+DIQEA
Sbjct: 87  PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146

Query: 172 LKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR 231
           LKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +       KQKR
Sbjct: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS-------KQKR 199

Query: 232 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQ 291
           KFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++VRCT+LLMLDYQ
Sbjct: 200 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQ 259

Query: 292 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR 351
           PPQFKLDPRLARLLG+HTQ+R  I+QALWQY+KT++LQD H++E++  DKY QQIF+  R
Sbjct: 260 PPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPR 319

Query: 352 MKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLST 411
           +KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ LK QM+SFLLST
Sbjct: 320 LKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLST 379

Query: 412 ASQQEIATLDN-----------------------------------------KTMTDVVG 430
           A+QQEI+ LD+                                         K MTDV G
Sbjct: 380 ANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAG 439

Query: 431 NPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
           NPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 440 NPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483


>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin d2 isoform 1 [Homo sapiens]
          Length = 531

 Score =  565 bits (1455), Expect = e-161
 Identities = 309/531 (58%), Positives = 367/531 (69%), Gaps = 79/531 (14%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVR-MGPA-----PGQGLYRSPM----PGAAYP 59
           ++P GGA A+         GPG  PGP +R  GPA     PG   +R PM    P A Y 
Sbjct: 14  LSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR-PMGPAGPAAQYQ 72

Query: 60  RPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAV 116
           RPGM PG+RM   G  +GPP    +G    +RPG+  + MD  RKR    Q Q      +
Sbjct: 73  RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP----PM 128

Query: 117 QNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI 176
             +    K++KMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188

Query: 177 KQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRVEGRLLEDSALSKY 224
            QKRKLRI+ISNTF+P+K++  D  GT            VASWELRVEG+LL+D +    
Sbjct: 189 TQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS---- 243

Query: 225 DATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTV 284
              KQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR  TTQETDGFQVKRPGD+NV+CT+
Sbjct: 244 ---KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300

Query: 285 LLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQ 344
           LLMLD+QPPQ+KLDPRLARLLG+HTQTR  I+QALW YIK ++LQD HERE++ C++Y +
Sbjct: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360

Query: 345 QIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQM 404
           QIF   R++FSEIP +L  LL  P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM
Sbjct: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420

Query: 405 NSFLLSTASQQEIATL-----------------------------------------DNK 423
           ++FL ST +QQEIA+L                                         D K
Sbjct: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480

Query: 424 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
            +TDV+GNPEEERRA FY QPWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531


>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin d2 isoform 2 [Homo sapiens]
          Length = 510

 Score =  561 bits (1445), Expect = e-160
 Identities = 305/511 (59%), Positives = 358/511 (70%), Gaps = 73/511 (14%)

Query: 20  GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPP 79
           GG   AAALG    P PP   G  PG  L R P P A Y RPGM PG+RM   G  +GPP
Sbjct: 17  GGGAVAAALG---APPPPAGPGMLPGPAL-RGPGP-AQYQRPGMSPGNRMPMAGLQVGPP 71

Query: 80  G---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQR 136
               +G    +RPG+  + MD  RKR    Q Q      +  +    K++KMADK+LPQR
Sbjct: 72  AGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP----PMPAQRRGLKRRKMADKVLPQR 127

Query: 137 IRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSD 196
           IRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+ QKRKLRI+ISNTF+P+K++
Sbjct: 128 IRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAE 187

Query: 197 AEDGEGT------------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIEL 244
             D  GT            VASWELRVEG+LL+D +       KQKRKFSSFFKSLVIEL
Sbjct: 188 G-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS-------KQKRKFSSFFKSLVIEL 239

Query: 245 DKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARL 304
           DK+LYGPDNHLVEWHR  TTQETDGFQVKRPGD+NV+CT+LLMLD+QPPQ+KLDPRLARL
Sbjct: 240 DKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARL 299

Query: 305 LGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHAL 364
           LG+HTQTR  I+QALW YIK ++LQD HERE++ C++Y +QIF   R++FSEIP +L  L
Sbjct: 300 LGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGL 359

Query: 365 LMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL---- 420
           L  P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM++FL ST +QQEIA+L    
Sbjct: 360 LQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKI 419

Query: 421 -------------------------------------DNKTMTDVVGNPEEERRAEFYFQ 443
                                                D K +TDV+GNPEEERRA FY Q
Sbjct: 420 HETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQ 479

Query: 444 PWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
           PWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 480 PWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 510


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT-PQ 72
            G  G SG  GA+   GP G  GPP  +GP+   G   + +PG   P PG    S  T P 
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG--ANGIPGPIGP-PGPRGRSGETGPA 1199

Query: 73   GP--SMGPPGYGGNPSVRPGL---AQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAK 124
            GP  + GPPG  G P   PG+   A +G+    K P P Q  +  Q A   R H+A+
Sbjct: 1200 GPPGNPGPPGPPGPPG--PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAE 1254



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
           V P+GG G  G  GA    GP G  GP    GP    G   SP P  A   PG   +PG+
Sbjct: 359 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 418

Query: 68  RMTPQGPSM-GPPGYGGNPSVRPG 90
           + +   P + G PG+ G P   PG
Sbjct: 419 KGSAGAPGIAGAPGFPG-PRGPPG 441



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 21/114 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRM 69
           G  G +G AGAA A G  G PGP   P  +GPA G G   +P   G A P     P    
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 389

Query: 70  TPQGP-----SMGPPGYGGNPSV-----------RPGLAQS-GMDQSRKRPAPQ 106
            P+G      S GP G  GNP              PG+A + G    R  P PQ
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 443



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
           G AG  G AGA    GP G PGP    G    +G   +  P  A   PG       PGS 
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN 911

Query: 69  MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             P  P  GPPG  G    +     SG
Sbjct: 912 GNPGPP--GPPGPSGKDGPKGARGDSG 936



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------------MPGAAYPR 60
           G AGA G AGA    GP G PGP    GP   +G    P              PG A P+
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479

Query: 61  PGMLP-------GSRMTPQGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               P       G+R  P G   +GPPG  G P  R    Q G+   +  P
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 530



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR- 68
           V   G  GA G  G     GP G PGP    G    +G    P P  +    G  PG R 
Sbjct: 770 VGEKGPEGAPGKDGGRGLTGPIGPPGP---AGANGEKGEVGPPGPAGSAGARG-APGERG 825

Query: 69  -MTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
              P GP+   GPPG  G P  +    ++G       P PQ
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G AG     G  G PGPP   GP+   G      P  A    G  PG    P
Sbjct: 892 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGARGDSGP-PGRAGEP 944

Query: 72  --QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
             QGP+ GPPG  G P         G   +   P PQ
Sbjct: 945 GLQGPA-GPPGEKGEP------GDDGPSGAEGPPGPQ 974



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP--RPGMLPGSRM 69
            PSG  G  G  GA+   GP G  GPP   GPA   G  R   PGA  P  R G       
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG--REGSPGADGPPGRDGAAGVKGD 1057

Query: 70   TPQGPSMGPPGYGGNPSVRPGLA 92
              +  ++G PG  G P   PG A
Sbjct: 1058 RGETGAVGAPGAPGPPG-SPGPA 1079



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--------LP 65
           G AG  G  G + A G  G PGPP   G     G+   P P  A   PG          P
Sbjct: 567 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626

Query: 66  GSRMTP----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           G R  P    +  + GPPG  G    R      G    +  P P
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRS-PMPGAAYPR-PGMLPGSR--M 69
            G AG  G  G   A+G  G PGPP   GPA   G        GA  P  P    G+R   
Sbjct: 1050 GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1109

Query: 70   TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             PQGP  G  G  G P  R      G    +  P P
Sbjct: 1110 GPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY-RSPMPGAAYPRPGMLPGSRMTPQ 72
           G +G+ G  G+   +GP G PG   R GPA   G       PG A P PG        P 
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG--------PV 359

Query: 73  GPSMGPPGYGGNPSVRPGLAQSG 95
           GP+ G PG+ G P  +     +G
Sbjct: 360 GPA-GGPGFPGAPGAKGEAGPTG 381



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRP 61
           V P G AG++G  GA    G  G PGP    GP        A G+         A  P P
Sbjct: 806 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865

Query: 62  GMLPGSRMTPQGP-----------SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
              P     PQGP           + GPPG  G P     +   G + +   P P
Sbjct: 866 -QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----PGMLPGS 67
           P G  G  G +G A   G  G PG P   G    +GL  +  PG A P+    P   PG 
Sbjct: 526 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGAPGE 583

Query: 68  RMTPQGPSMGPPGYGGNPSV 87
              P  P  GP G  G P V
Sbjct: 584 DGRPGPP--GPQGARGQPGV 601



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQGL-YRSPMPGAAYPRP 61
           +  P G AG +G  G   A GP G       PGPP   G    QG+   +  PG   PR 
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699

Query: 62  GM-LPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSG 95
               PG R +P    + GP G  G P        SG
Sbjct: 700 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 735



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-------MLPG 66
           G  G  G  G     G  G PGPP   GP    G + + M G    + G         P 
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 203

Query: 67  SRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             M P+GP     + GP G+ GNP        SG    R  P P
Sbjct: 204 GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 247



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP-----APGQGLYRSPMPG----A 56
           GFQ     G  G  G  G +  +GP G PGPP + G       PG+   R P PG     
Sbjct: 222 GFQ-----GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGAR 275

Query: 57  AYPRPGMLPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            +P    LPG +     P + G  G  G P V+    +SG       P P
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK---GESGSPGENGSPGP 322



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG--MLPGSRMTP 71
           G  G +G AG     GP G  G     GP+  QGL   P P     +PG   +PG    P
Sbjct: 633 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 692

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               +GP G  G P  R      G+   R  P
Sbjct: 693 --GLVGPRGERGFPGERGSPGAQGLQGPRGLP 722



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
           +GGA      G    +GP G PGP    GP   QG   +P  PG     PG+       P
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGP---QGFQGNPGEPG----EPGV-----SGP 238

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            GP  GPPG  G P       + G    R  P PQ
Sbjct: 239 MGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLPG 66
            G AG  G  G     GP G  GPP   G A  +G+   P        PG   P P   PG
Sbjct: 948  GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG--LPGPSGEPG 1005

Query: 67   SRMTP-QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             +  P      GPPG  G P +     + G + S     P
Sbjct: 1006 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G AGA G  G     G  G PG    MGP    G    P       +PG        P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPG--KAGERGP 268

Query: 72  QGP--SMGPPGYGGNPSVRPGLAQSGMDQSR 100
            GP  + G PG  G P V+      G+D ++
Sbjct: 269 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/73 (41%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G AG  G  G     G  G PGP  R G  PG        PG   P PG        P
Sbjct: 124 PQGPAGEQGPRGDRGDKGEKGAPGPRGRDG-EPG-------TPGNPGP-PG--------P 166

Query: 72  QGPSMGPPGYGGN 84
            GP  GPPG GGN
Sbjct: 167 PGPP-GPPGLGGN 178



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 38/111 (34%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
            S  P+G  G  G  G A A GP G  GP    G    QG  R     A  P    L G R
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHR 1133

Query: 69   --------MTPQGPS-----MGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
                      P GPS      GP G  G P   PG +  SG D +   P P
Sbjct: 1134 GFTGLQGLPGPPGPSGDQGASGPAGPSG-PRGPPGPVGPSGKDGANGIPGP 1183



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-------PG 66
           G  G  G  G+A A G  G PG P   GP   QG      P      PG+        P 
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 470

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
               P GP  G PG  G    R    + G
Sbjct: 471 GEPGPAGP-QGAPGPAGEEGKRGARGEPG 498



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 25/114 (21%)

Query: 12   PSGGAGASGGAGAAAALG----PG--------GTPGP---PVRMGPAPGQGLYRSPMPGA 56
            PSG  G  G  G A   G    PG        G PGP   P + G APG    R P PG 
Sbjct: 964  PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG-APGASGDRGP-PGP 1021

Query: 57   AYPRPGML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
              P PG+      PG   +P     GPPG  G   V+    ++G   +   P P
Sbjct: 1022 VGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGP 1072



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
           G   + P G  GA G  G     G  G  G P   GP+   GL           RPG   
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS---GLAGPKGANGDPGRPGEPG 555

Query: 64  LPGSR-MTPQGPSMGPPGYGGNPSVRPG 90
           LPG+R +T +    GP G  G PS  PG
Sbjct: 556 LPGARGLTGRPGDAGPQGKVG-PSGAPG 582



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPG 55
            + P G  G SG  G A   G  G PGPP   GP PG G+  S   G
Sbjct: 1184 IGPPGPRGRSGETGPAGPPGNPGPPGPP---GP-PGPGIDMSAFAG 1225



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 22/81 (27%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           S  P+G +G  G  G   A G  G PG    +  APG            +P P   PG  
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPG----IAGAPG------------FPGPRGPPG-- 441

Query: 69  MTPQGPS--MGPPGYGGNPSV 87
             PQG +  +GP G  G P +
Sbjct: 442 --PQGATGPLGPKGQTGEPGI 460



 Score = 30.0 bits (66), Expect = 4.8
 Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 12  PSGGAGASGGA---GAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P+G  G  G     G A + G  G PG     GP PG   +  P PGA   +PG      
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP-PGAD-GQPGAKGEQG 852

Query: 69  MTPQGPSMGPPGYGGNPSVRPG 90
              Q    G PG  G PS  PG
Sbjct: 853 EAGQKGDAGAPGPQG-PSGAPG 873


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT-PQ 72
            G  G SG  GA+   GP G  GPP  +GP+   G   + +PG   P PG    S  T P 
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG--ANGIPGPIGP-PGPRGRSGETGPA 1130

Query: 73   GP--SMGPPGYGGNPSVRPGL---AQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAK 124
            GP  + GPPG  G P   PG+   A +G+    K P P Q  +  Q A   R H+A+
Sbjct: 1131 GPPGNPGPPGPPGPPG--PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAE 1185



 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
           V P+GG G  G  GA    GP G  GP    GP    G   SP P  A   PG   +PG+
Sbjct: 290 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 349

Query: 68  RMTPQGPSM-GPPGYGGNPSVRPG 90
           + +   P + G PG+ G P   PG
Sbjct: 350 KGSAGAPGIAGAPGFPG-PRGPPG 372



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 21/114 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRM 69
           G  G +G AGAA A G  G PGP   P  +GPA G G   +P   G A P     P    
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 320

Query: 70  TPQGP-----SMGPPGYGGNPSV-----------RPGLAQS-GMDQSRKRPAPQ 106
            P+G      S GP G  GNP              PG+A + G    R  P PQ
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 374



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
           G AG  G AGA    GP G PGP    G    +G   +  P  A   PG       PGS 
Sbjct: 783 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN 842

Query: 69  MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             P  P  GPPG  G    +     SG
Sbjct: 843 GNPGPP--GPPGPSGKDGPKGARGDSG 867



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------------MPGAAYPR 60
           G AGA G AGA    GP G PGP    GP   +G    P              PG A P+
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410

Query: 61  PGMLP-------GSRMTPQGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               P       G+R  P G   +GPPG  G P  R    Q G+   +  P
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 461



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR- 68
           V   G  GA G  G     GP G PGP    G    +G    P P  +    G  PG R 
Sbjct: 701 VGEKGPEGAPGKDGGRGLTGPIGPPGP---AGANGEKGEVGPPGPAGSAGARG-APGERG 756

Query: 69  -MTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
              P GP+   GPPG  G P  +    ++G       P PQ
Sbjct: 757 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G AG     G  G PGPP   GP+   G      P  A    G  PG    P
Sbjct: 823 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGARGDSGP-PGRAGEP 875

Query: 72  --QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
             QGP+ GPPG  G P         G   +   P PQ
Sbjct: 876 GLQGPA-GPPGEKGEP------GDDGPSGAEGPPGPQ 905



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP--RPGMLPGSRM 69
            PSG  G  G  GA+   GP G  GPP   GPA   G  R   PGA  P  R G       
Sbjct: 931  PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG--REGSPGADGPPGRDGAAGVKGD 988

Query: 70   TPQGPSMGPPGYGGNPSVRPGLA 92
              +  ++G PG  G P   PG A
Sbjct: 989  RGETGAVGAPGAPGPPG-SPGPA 1010



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--------LP 65
           G AG  G  G + A G  G PGPP   G     G+   P P  A   PG          P
Sbjct: 498 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557

Query: 66  GSRMTP----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           G R  P    +  + GPPG  G    R      G    +  P P
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRS-PMPGAAYPR-PGMLPGSR--M 69
            G AG  G  G   A+G  G PGPP   GPA   G        GA  P  P    G+R   
Sbjct: 981  GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1040

Query: 70   TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             PQGP  G  G  G P  R      G    +  P P
Sbjct: 1041 GPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY-RSPMPGAAYPRPGMLPGSRMTPQ 72
           G +G+ G  G+   +GP G PG   R GPA   G       PG A P PG        P 
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG--------PV 290

Query: 73  GPSMGPPGYGGNPSVRPGLAQSG 95
           GP+ G PG+ G P  +     +G
Sbjct: 291 GPA-GGPGFPGAPGAKGEAGPTG 312



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRP 61
           V P G AG++G  GA    G  G PGP    GP        A G+         A  P P
Sbjct: 737 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796

Query: 62  GMLPGSRMTPQGP-----------SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
              P     PQGP           + GPPG  G P     +   G + +   P P
Sbjct: 797 -QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----PGMLPGS 67
           P G  G  G +G A   G  G PG P   G    +GL  +  PG A P+    P   PG 
Sbjct: 457 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGAPGE 514

Query: 68  RMTPQGPSMGPPGYGGNPSV 87
              P  P  GP G  G P V
Sbjct: 515 DGRPGPP--GPQGARGQPGV 532



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQGL-YRSPMPGAAYPRP 61
           +  P G AG +G  G   A GP G       PGPP   G    QG+   +  PG   PR 
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630

Query: 62  GM-LPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSG 95
               PG R +P    + GP G  G P        SG
Sbjct: 631 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 666



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-------MLPG 66
           G  G  G  G     G  G PGPP   GP    G + + M G    + G         P 
Sbjct: 75  GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 134

Query: 67  SRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             M P+GP     + GP G+ GNP        SG    R  P P
Sbjct: 135 GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 178



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP-----APGQGLYRSPMPG----A 56
           GFQ     G  G  G  G +  +GP G PGPP + G       PG+   R P PG     
Sbjct: 153 GFQ-----GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGAR 206

Query: 57  AYPRPGMLPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            +P    LPG +     P + G  G  G P V+    +SG       P P
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK---GESGSPGENGSPGP 253



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG--MLPGSRMTP 71
           G  G +G AG     GP G  G     GP+  QGL   P P     +PG   +PG    P
Sbjct: 564 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 623

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               +GP G  G P  R      G+   R  P
Sbjct: 624 --GLVGPRGERGFPGERGSPGAQGLQGPRGLP 653



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
           +GGA      G    +GP G PGP    GP   QG   +P  PG     PG+       P
Sbjct: 122 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGP---QGFQGNPGEPG----EPGV-----SGP 169

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            GP  GPPG  G P       + G    R  P PQ
Sbjct: 170 MGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLPG 66
           G AG  G  G     GP G  GPP   G A  +G+   P        PG   P P   PG
Sbjct: 879 GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG--LPGPSGEPG 936

Query: 67  SRMTP-QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            +  P      GPPG  G P +     + G + S     P
Sbjct: 937 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G AGA G  G     G  G PG    MGP    G    P       +PG        P
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPG--KAGERGP 199

Query: 72  QGP--SMGPPGYGGNPSVRPGLAQSGMDQSR 100
            GP  + G PG  G P V+      G+D ++
Sbjct: 200 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 230



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/73 (41%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G AG  G  G     G  G PGP  R G  PG        PG   P PG        P
Sbjct: 55  PQGPAGEQGPRGDRGDKGEKGAPGPRGRDG-EPG-------TPGNPGP-PG--------P 97

Query: 72  QGPSMGPPGYGGN 84
            GP  GPPG GGN
Sbjct: 98  PGPP-GPPGLGGN 109



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 38/111 (34%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
            S  P+G  G  G  G A A GP G  GP    G    QG  R     A  P    L G R
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHR 1064

Query: 69   --------MTPQGPS-----MGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
                      P GPS      GP G  G P   PG +  SG D +   P P
Sbjct: 1065 GFTGLQGLPGPPGPSGDQGASGPAGPSG-PRGPPGPVGPSGKDGANGIPGP 1114



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-------PG 66
           G  G  G  G+A A G  G PG P   GP   QG      P      PG+        P 
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 401

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
               P GP  G PG  G    R    + G
Sbjct: 402 GEPGPAGP-QGAPGPAGEEGKRGARGEPG 429



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 25/114 (21%)

Query: 12   PSGGAGASGGAGAAAALG----PG--------GTPGP---PVRMGPAPGQGLYRSPMPGA 56
            PSG  G  G  G A   G    PG        G PGP   P + G APG    R P PG 
Sbjct: 895  PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG-APGASGDRGP-PGP 952

Query: 57   AYPRPGML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
              P PG+      PG   +P     GPPG  G   V+    ++G   +   P P
Sbjct: 953  VGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGP 1003



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
           G   + P G  GA G  G     G  G  G P   GP+   GL           RPG   
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS---GLAGPKGANGDPGRPGEPG 486

Query: 64  LPGSR-MTPQGPSMGPPGYGGNPSVRPG 90
           LPG+R +T +    GP G  G PS  PG
Sbjct: 487 LPGARGLTGRPGDAGPQGKVG-PSGAPG 513



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPG 55
            + P G  G SG  G A   G  G PGPP   GP PG G+  S   G
Sbjct: 1115 IGPPGPRGRSGETGPAGPPGNPGPPGPP---GP-PGPGIDMSAFAG 1156



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 22/81 (27%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           S  P+G +G  G  G   A G  G PG    +  APG            +P P   PG  
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPG----IAGAPG------------FPGPRGPPG-- 372

Query: 69  MTPQGPS--MGPPGYGGNPSV 87
             PQG +  +GP G  G P +
Sbjct: 373 --PQGATGPLGPKGQTGEPGI 391



 Score = 30.0 bits (66), Expect = 4.8
 Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 12  PSGGAGASGGA---GAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P+G  G  G     G A + G  G PG     GP PG   +  P PGA   +PG      
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP-PGAD-GQPGAKGEQG 783

Query: 69  MTPQGPSMGPPGYGGNPSVRPG 90
              Q    G PG  G PS  PG
Sbjct: 784 EAGQKGDAGAPGPQG-PSGAPG 804


>gi|50428940 mediator complex subunit 25 [Homo sapiens]
          Length = 747

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 8   QSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP------APGQGLYRSPMPGAAYPRP 61
           Q  AP  G   S         GP G P PP    P      APG GL  +  PGA     
Sbjct: 310 QQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAG 369

Query: 62  GMLPGSRMTPQGPSMGPPGYGGNPSV-RPGLAQSGMDQSRKRPAPQQI-------QQVQQ 113
            + PG    P    +G P  GG  SV    LA SG+ + +++P P  +       + +  
Sbjct: 370 TVAPGGVSGPSPAQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPC 429

Query: 114 QAVQNRNHNAKKKKMADKILPQRI 137
           Q   N   N K ++   K++ Q I
Sbjct: 430 QVYVNHGENLKTEQWPQKLIMQLI 453



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 21/101 (20%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  GASG  G      P GT  PP                PGA    PG   G    P
Sbjct: 592 PQGTVGASGATGQPQ---PQGTAQPP----------------PGAPQGPPGAASGP--PP 630

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
            GP + P   G NP +R  L      Q+   P    +  +Q
Sbjct: 631 PGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQ 671


>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
          Length = 832

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 10  VAPSGGAGASG-GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           ++ +GGAG  G GAGA A  GPG  P  P  + PAP QG   SP   AA       P + 
Sbjct: 1   MSEAGGAGPGGCGAGAGAGAGPGALPPQPAALPPAPPQG---SPCAAAAGGSGACGPATA 57

Query: 69  MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQV 111
           +   G + GP   GG  S R  + ++   Q R  P  ++++++
Sbjct: 58  VAAAGTAEGP---GGGGSARIAVKKA---QLRSAPRAKKLEKL 94


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 37/100 (37%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           GG G+ G  G   + G  G PGPP   GP    G+   P P      PG   G R  P G
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK-NGERGGPGG 601

Query: 74  PS-MGPPGYGG--NPSVRPGLAQSGMDQ-SRKRPAPQQIQ 109
           P   GPPG  G   P   PG    G D+     P PQ +Q
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQ 641



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 10  VAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQG-LYRSPMPGAAYPRPG 62
           V P+G  G++G  G     GP G       PGPP   G   G+G +  + +PGA    PG
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA----PG 408

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
           ++ G+R  P     GP G  G P +R G  + G + ++  P P+
Sbjct: 409 LM-GARGPP-----GPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP-- 71
           G AGA G  GA  + G  G PGPP   G  PG    +  +  A  P     PG R  P  
Sbjct: 315 GAAGARGNDGARGSDGQPGPPGPPGTAG-FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373

Query: 72  ------QGPSMGPPGYGGNPSVRPGLAQSGM 96
                 QGP  GPPG  G+P  +  +  +G+
Sbjct: 374 QGHAGAQGPP-GPPGINGSPGGKGEMGPAGI 403



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 36/111 (32%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM---------- 63
           GG GA+G  GA    GP G+ G P   GP+   G    P P      PG           
Sbjct: 867 GGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDA 926

Query: 64  -LPGSRMTP--QGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQ 109
             PG + +P  QGP  + GP G  G    R      GM   R  P PQ ++
Sbjct: 927 GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVK 977



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 35/95 (36%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-LPGSRMTP 71
           +G  GA+G  GA    GP G  G P   GPA  +G      PG A PR     PG    P
Sbjct: 476 NGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG-----APGPAGPRGAAGEPGRDGVP 530

Query: 72  QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            GP M G PG  G P         G      RP P
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 35/91 (38%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 5   AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML 64
           AGF   AP G  G  GG G   A G  G  GPP   GP  G G        A  P P  +
Sbjct: 809 AGFPG-AP-GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG-------PAGPPGPQGV 859

Query: 65  PGSRMTPQGPSM----------GPPGYGGNP 85
            G R +P GP            GPPG  GNP
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNP 890



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 7   FQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMG--PAPGQGLYRSP--MPGAAYPRPG 62
           + S     G    G AG     GP G PGPP   G   +PG   Y+ P   PG A P   
Sbjct: 155 YDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGP 214

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPG 90
             P   + P GP+ G  G  G P  RPG
Sbjct: 215 PGPPGAIGPSGPA-GKDGESGRPG-RPG 240



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G     GP G  G P   GP    G    P P      PG  PG +   
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA-PGGKGDA 677

Query: 72  QGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P   GPPG  G P +R G    G +  +    P
Sbjct: 678 GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-----MLPGS 67
           +G  G  GG GAA   GP G  G P   G    +G   SP P      PG      +PG 
Sbjct: 698 AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG- 756

Query: 68  RMTPQGPS--MGPPGYGGNP 85
           +  P+GP+  +GPPG  G P
Sbjct: 757 KDGPRGPTGPIGPPGPAGQP 776



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 4   RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM 63
           R G  S  P G  G  GG GA    G  G  GP   +GP    G       G A   PG 
Sbjct: 731 RGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG- 789

Query: 64  LPGSRMTP-QGPSMGPPGYGGNPSVRPG 90
           + G R +P +    GPPG  G P   PG
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGA-PG 816



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLP 65
           +G  G+ G  G     GP G PG P + G   G+G   +P        PG A P  G  P
Sbjct: 791 AGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP 850

Query: 66  GSRMTPQG-----PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                PQG      S G PG  G P  R      G + +   P P
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP 895



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     GP G PGPP  +GP+   G            RPG  PG R  P  
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAG------KDGESGRPGR-PGERGLPGP 247

Query: 74  PSM-GPPGYGGNPSVR 88
           P + GP G  G P ++
Sbjct: 248 PGIKGPAGIPGFPGMK 263



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G +G  G    +GP G PG P  MG A G      P P  A   PG+  G+    
Sbjct: 382 PPGPPGINGSPGGKGEMGPAGIPGAPGLMG-ARGP-----PGPAGANGAPGLRGGAGEPG 435

Query: 72  QGPSMGPP------GYGGNPSVRPGLAQSGMDQSRKRP 103
           +  + G P      G  G P V     + G D S   P
Sbjct: 436 KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEP 473



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----PGQGLYRSPMPGAAYPR--- 60
           ++ PSG AG  G +G     G  G PGPP   GPA     PG   +R    G    +   
Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRG-FDGRNGEKGET 278

Query: 61  --PGM-----LPGSRMTPQGPSMGP---PGYGGNPSVRPGLAQSGMDQSR 100
             PG+     LPG    P GP MGP   PG  G P +       G D +R
Sbjct: 279 GAPGLKGENGLPGENGAP-GP-MGPRGAPGERGRPGLPGAAGARGNDGAR 326



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 30/92 (32%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRPGMLPGSRMTP 71
           GG G  G  G     G  G  GPP   GP   +G    P P      P  G  PG    P
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP 656

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
             P  GP G  G P    G   +G    R  P
Sbjct: 657 GEP--GPKGDAGAPGAPGGKGDAGAPGERGPP 686



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT--P 71
            GG G  G  G+  A G  G PGPP  +GPA   G      P      PG   GSR    P
Sbjct: 1029 GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP-AGSRGAPGP 1087

Query: 72   QGPS--------------MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            QGP                G  G+ GNP        +G   +   P P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGP 1135



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 41/131 (31%), Positives = 43/131 (32%), Gaps = 40/131 (30%)

Query: 13   SGGAGASGGAGAAAALGPGGT---------------------------------PGPPVR 39
            SG  G SG AG A A GP G+                                 PG P  
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120

Query: 40   MGPAPGQGLYRSPMPGAAYPR----PGMLPGSRMTPQGPS-MGPPGYGGNPSVRPGLAQS 94
             GPA  QG   S  PG A PR    P   PG   T   P  +GPPG  GN   R      
Sbjct: 1121 PGPAGQQGAIGS--PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178

Query: 95   GMDQSRKRPAP 105
            G       P P
Sbjct: 1179 GHPGQPGPPGP 1189



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 29/77 (37%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
            S  P+G  GA G  G A   GP G  GPP + G +   G    P P       G   GS 
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGS-EGSP 1178

Query: 69   MTPQGPSMGPPGYGGNP 85
              P  P  GPPG  G P
Sbjct: 1179 GHPGQP--GPPGPPGAP 1193



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 14  GGAGAS---GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSR 68
           G AGA    G  G A A G  G  GPP   GP  G+G    P P  A   PG+  +PG R
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPP---GPEGGKGAAGPPGPPGAAGTPGLQGMPGER 731

Query: 69  MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                P  GP G  G P         G D  R    P
Sbjct: 732 GGLGSP--GPKGDKGEPGGPGADGVPGKDGPRGPTGP 766



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 40/112 (35%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 6   GFQSVA-PSGGAGASGGAGAAAA---LGPGGTPGPPVRMGPAPGQGLYRSP-MPG--AAY 58
           GF+  A P+G  G  G AG   A    GP G  G P R G   G G+   P  PG   + 
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD 548

Query: 59  PRPGMLPGS-----RMTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
            +PG  PGS     R  P GPS   G PG  G P  +      G +  R  P
Sbjct: 549 GKPGP-PGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           PSG  G  G  G A   G  G+PG     G A   G   SP        PG L  + +T 
Sbjct: 895 PSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITG 954

Query: 72  QGPSMGPPGYGG-----------NPSVRPGLAQSGMDQSRKRPAPQ 106
                GPPG  G             S +PG   +G+   R  P PQ
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPG--ANGLSGERGPPGPQ 998



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 34/88 (38%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--APG-QGLY-RSPMPGA-------A 57
            S    G  GA G  G A   G  G  GPP   GP  +PG QG+   S  PGA        
Sbjct: 934  SPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG 993

Query: 58   YPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
             P P  LPG   T      G PG  GNP
Sbjct: 994  PPGPQGLPGLAGT-----AGEPGRDGNP 1016



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/100 (30%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
            S  P G  G SG  GA    G  G PGP   P   G A   G   +P       R G   
Sbjct: 970  SPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG 1029

Query: 66   GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            G     +  S G PG  G+P     +  +G    R    P
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGP 1069



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 26/102 (25%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPP---------------------VRMGPAPGQGLYR 50
           P G  G +G  G     G  G+PGPP                     V+ G A G GL  
Sbjct: 113 PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG-GLAG 171

Query: 51  SPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
            P P A  P P   PG+   P  P  G PGY G P   PG A
Sbjct: 172 YPGP-AGPPGPPGPPGTSGHPGSP--GSPGYQGPPG-EPGQA 209



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 1   MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
           M AR        +G  G  GGAG     G  G PGP    G A   G+  +         
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469

Query: 61  PGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLAQSGMDQSRKRPAP 105
           PG    + +       G PG+ G   P+  PG  + G    R  P P
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNGIPG--EKGPAGERGAPGP 514



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMG-----PAPGQ----GLYRSP-MPGAAYPRPGM 63
           G  G  G  G     GP G  G P   G      APG+    GL  +P + G A P PG 
Sbjct: 645 GTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP-PGP 703

Query: 64  LPGSRMT-PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
             G     P GP  + G PG  G P  R GL   G    +  P
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP 746



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQ-GLYRSPMPGAAYPRPG 62
           G   + P+G  GA G  GA    GP G  G P   G A  PG+ G    P P       G
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAG 453

Query: 63  M--LPGSR-MTPQGPSMGPPGYGGNP 85
           +  +PG++    +  S G PG  G P
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLP 479



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGA--AYPRPGMLPGSR 68
            P G  G +G AG     G  G+ G P R G   G+G    +  PGA  A   PG  P   
Sbjct: 997  PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG--PPGP 1054

Query: 69   MTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            + P G S      GP G  G P         G   SR  P PQ
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAP---------GPAGSRGAPGPQ 1088



 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG 45
            P G  G  G  G+    G  G PGPP   GP  G
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCG 1198



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 29  GPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSV 87
           GP G PGPP   G     G+   P  PG+  P PG+       P GP    P Y  +  V
Sbjct: 106 GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGP-PGI---CESCPTGPQNYSPQY-DSYDV 160

Query: 88  RPGLAQSGM 96
           + G+A  G+
Sbjct: 161 KSGVAVGGL 169


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 21/109 (19%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG-------QGLYRSPMPGAAYPRP 61
           +V P G AG  G +G A   GP GTPGP   +G APG       +G    P    A   P
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG-APGILGLPGSRGERGLPGVAGAVGEP 894

Query: 62  GML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           G L     PG+R        GPPG  G+P V     ++G D +     P
Sbjct: 895 GPLGIAGPPGAR--------GPPGAVGSPGVNGAPGEAGRDGNPGNDGP 935



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
           + P G  GA+G  G     GP G PG P + GPA  +G    P        PG    PG 
Sbjct: 96  MGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGE 155

Query: 68  R--MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
           R  + PQG + G PG  G P  +     +G+D  + +P
Sbjct: 156 RGVVGPQG-ARGFPGTPGLPGFKGIRGHNGLDGLKGQP 192



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 33/84 (39%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G AG  G  GA  ++GP G  GP    GPA   G  R+  PG   P     P     P G
Sbjct: 1033 GIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG--RTGHPGTVGPAGIRGPQGHQGPAG 1090

Query: 74   PSMGPPGYGGNPSVRPGLAQSGMD 97
            P  GPPG  G P V  G    G D
Sbjct: 1091 PP-GPPGPPGPPGVSGGGYDFGYD 1113



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 41/117 (35%), Positives = 49/117 (41%), Gaps = 20/117 (17%)

Query: 4   RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYPRP 61
           RAG   + P G  GASG AG     G  G PG P  MGP   +GL  SP  +  A    P
Sbjct: 413 RAGV--MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGP---RGLPGSPGNIGPAGKEGP 467

Query: 62  GMLPG--SRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             LPG   R  P GP+            GP G  G+P        +G+  +R  P P
Sbjct: 468 VGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP 524



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G +GA+G  G   + GP G PGP    G     G   +  P      P  LPG R   
Sbjct: 593 PPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSG----PSGLPGERGAA 648

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
             P  G  G  G P +R  +   G D +R  P
Sbjct: 649 GIP--GGKGEKGEPGLRGEIGNPGRDGARGAP 678



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 35/93 (37%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMTP 71
           G AG  G AGA    GP G PGP    G    +GL   P P  +    G    PGS   P
Sbjct: 310 GAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGS-AGP 368

Query: 72  QGP--------SMGPPGYGGN--PSVRPGLAQS 94
           QGP          GP G  G+  P   PGL  S
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS 401



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
           +G  G +G  GAA   GP G PGP    G     G+  +  PGAA          R  P 
Sbjct: 750 NGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM--TGFPGAA---------GRTGPP 798

Query: 73  GPS--MGPPGYGGNPSVRPGLAQSGMDQ 98
           GPS   GPPG  G P+ + GL     DQ
Sbjct: 799 GPSGISGPPGPPG-PAGKEGLRGPRGDQ 825



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G AG     GP G  GPP   GPA  +GL          PR    P  R T 
Sbjct: 782 PPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGL--------RGPRGDQGPVGR-TG 832

Query: 72  QGPSMGPPGYGG--NPSVRPGLA 92
           +  ++GPPG+ G   PS   G A
Sbjct: 833 EVGAVGPPGFAGEKGPSGEAGTA 855



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G AGA  A G  G PGP    G +  +G      PG+A P+    P      
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG-----EPGSAGPQGPPGPSGEEGK 380

Query: 72  QGPS--------MGPPGYGGNPSVR 88
           +GP+         GPPG  G+P  R
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSR 405



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 16/95 (16%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----PGQ-GLY-RSPMPGAAYPRPGML 64
           P G  G  GG G     GP G  G P   GPA     PG+ GL+    +PG A PR    
Sbjct: 533 PPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERG 592

Query: 65  PGSRMTPQGPS--------MGPPGYGGNPSVRPGL 91
           P       GP+         GPPG  GN    PG+
Sbjct: 593 PPGESGAAGPTGPIGSRGPSGPPGPDGNKG-EPGV 626



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRM 69
           P+G  G SG  G   + GP G PGP    G     G   S  P      PG+   PGSR 
Sbjct: 350 PAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP---PGLRGSPGSRG 406

Query: 70  TP----QGPSMGPPGYGG 83
            P    +   MGPPG  G
Sbjct: 407 LPGADGRAGVMGPPGSRG 424



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  GA G  G   A G  GTPG     G    +G   +P P  A    G +    + P G
Sbjct: 190 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSV--GPVGPAG 247

Query: 74  P--SMGPPGYGGNPSVRPGLAQSG 95
           P  S GPPG+ G P  +  +   G
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVG 271



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 3   ARAGFQSVAPSGGAGASGGAGAAAALGPG------GTPGPPVRMGPAPGQGLY----RSP 52
           AR    +V   G AGA+G  G A A GP       G+PG    +GPA   G       + 
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733

Query: 53  MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLAQSGMD 97
            PGA   R    P       GP+ GP G  G   P+  PG A S  D
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPT-GPVGAAGPAGPNGPPGPAGSRGD 779



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG--SRM 69
           P G  G  G  G     GP G PGPP   GP    G + +   G      G+ PG    M
Sbjct: 40  PRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGV---GLGPGPMGLM 96

Query: 70  TPQGP-----SMGPPGYGGNPSVRPG 90
            P+GP     + GP G+ G P+  PG
Sbjct: 97  GPRGPPGAAGAPGPQGFQG-PAGEPG 121



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 37/91 (40%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGML 64
           S  P G  G SG  G     G  G+ GPP   GP    GL  SP    +PGA   R G++
Sbjct: 365 SAGPQGPPGPSGEEGKRGPNGEAGSAGPP---GP---PGLRGSPGSRGLPGAD-GRAGVM 417

Query: 65  --PGSRMTPQGPS--MGPPGYGGNPSVRPGL 91
             PGSR    GP+   GP G  G P   PGL
Sbjct: 418 GPPGSR-GASGPAGVRGPNGDAGRPG-EPGL 446



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           +  P+G AG  G  G     GP G PG P   G    +G   + +PG A   PG LPG R
Sbjct: 272 NAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKG--AAGLPGVA-GAPG-LPGPR 327

Query: 69  MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             P     GP G  G    R  + + G
Sbjct: 328 GIP-----GPVGAAGATGARGLVGEPG 349



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/82 (36%), Positives = 31/82 (37%), Gaps = 17/82 (20%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-------- 63
           P G  GA G  G     G  G  GPP   GP   QGL     P     +PG         
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPP---GPPGFQGLPGPSGPAGEVGKPGERGLHGEFG 580

Query: 64  LPGSRMTPQGP--SMGPPGYGG 83
           LPG    P GP    GPPG  G
Sbjct: 581 LPG----PAGPRGERGPPGESG 598



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQ----GLYRSPMP-GAAYPRPGM-LP 65
           P+G  G+ G  G     GP G+ GPP   G APG     G   +  P G A PR  + LP
Sbjct: 230 PAGARGSDGSVGPVGPAGPIGSAGPPGFPG-APGPKGEIGAVGNAGPAGPAGPRGEVGLP 288

Query: 66  GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQI 108
           G    P GP  G PG  G    +      G+  +   P P+ I
Sbjct: 289 G-LSGPVGPP-GNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI 329



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 12/75 (16%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G AG +G  GA    G  G  GPP   G   G+G    P P          PG +  P G
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGP----------PGFQGLP-G 559

Query: 74  PSMGPPGYGGNPSVR 88
           PS GP G  G P  R
Sbjct: 560 PS-GPAGEVGKPGER 573



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 29/88 (32%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML- 64
           G    A   G G   G G    +GP G PG     GP   QG      P      PG   
Sbjct: 74  GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQG------PAGEPGEPGQTG 127

Query: 65  PGSRMTPQGP--SMGPPGYGGNPSVRPG 90
           P     P GP    G  G+ G P  RPG
Sbjct: 128 PAGARGPAGPPGKAGEDGHPGKPG-RPG 154



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-PGQGLYRSPMPGAAYP--RPGMLPG 66
           V P+G  G++G  G   A GP G  G     GPA P        +PG + P   PG    
Sbjct: 243 VGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGA 302

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPG 90
           + +T    + G PG  G P + PG
Sbjct: 303 NGLTGAKGAAGLPGVAGAPGL-PG 325



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQGLYRSPMPGAAYPRPGMLPG 66
           +  PSG +G  G  GAA   G  G  G P   G    PG+   R        P P    G
Sbjct: 632 TAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATG 691

Query: 67  SR--MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
            R      GP+ GP G  G+P  R  +  +G
Sbjct: 692 DRGEAGAAGPA-GPAGPRGSPGERGEVGPAG 721



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G    +G  G PGP   +GPA   G       G   P   + P   + P+G
Sbjct: 943  GHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHG-----NRGETGPSGPVGPAGAVGPRG 997

Query: 74   PSMGPPGYGGN 84
            PS GP G  G+
Sbjct: 998  PS-GPQGIRGD 1007



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAA 57
            +V P+G  G  G  G A   GP G PGPP   G     G     YR+  P +A
Sbjct: 1073 TVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSA 1125



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPGSR 68
           +G  G  G  G   A GP G  G    +GP    G   S      PGA  P+  +     
Sbjct: 213 TGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGN 272

Query: 69  MTPQGPSMGPPGYGGNPSV 87
             P GP+ GP G  G P +
Sbjct: 273 AGPAGPA-GPRGEVGLPGL 290



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
            V P+G  G  G  G +  +GP G  GP    GP+  QG+      PG   PR   LPG  
Sbjct: 969  VGPAGKHGNRGETGPSGPVGPAGAVGP---RGPSGPQGIRGDKGEPGEKGPRG--LPG-- 1021

Query: 69   MTPQGPSMGPPGYGGN 84
            +       G PG  G+
Sbjct: 1022 LKGHNGLQGLPGIAGH 1037



 Score = 30.0 bits (66), Expect = 4.8
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 23/101 (22%)

Query: 9    SVAPSGGAGASGG---AGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----P 61
            ++ P G AGA G     G A   G  G  GP   +GPA           GA  PR    P
Sbjct: 953  NIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPA-----------GAVGPRGPSGP 1001

Query: 62   GMLPGSRMTP--QGPSMGPPGYGGNPSVR--PGLAQSGMDQ 98
              + G +  P  +GP  G PG  G+  ++  PG+A    DQ
Sbjct: 1002 QGIRGDKGEPGEKGP-RGLPGLKGHNGLQGLPGIAGHHGDQ 1041



 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 21/65 (32%)

Query: 20 GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPP 79
          G AG     G  G PGPP R G     G      PG               P GP  GPP
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTG-----PPG---------------PPGPP-GPP 71

Query: 80 GYGGN 84
          G GGN
Sbjct: 72 GLGGN 76


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
           V P G AG +G  G     GP G PG     G A  +G    P P  A  + G       
Sbjct: 841 VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 900

Query: 65  PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
           PG R  P           +GPS GPPG  G+P  R      G      RP PQ
Sbjct: 901 PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 952



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G   +LGP G PGPP + G    QGL     PG   P+  + P     P
Sbjct: 537 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 588

Query: 72  QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
           QG    P M    GPPG+ G    P  +     SG       P P+ ++ V
Sbjct: 589 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 639



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
           PSG  G +G  G   A G GG  GPP R GP  P        +PG   P   + P  R  
Sbjct: 921 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 977

Query: 71  PQGPSMGPPGYGGNPSV 87
            QGP +G PG  G P V
Sbjct: 978 VQGP-VGLPGPAGPPGV 993



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
           + P G  G SG  G     GP G PGPP VR      GP    G    P P      PG 
Sbjct: 511 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570

Query: 64  --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
             LPG    PQG ++GP G  G P  +PGL
Sbjct: 571 QGLPG----PQG-AIGPHGEKG-PQGKPGL 594



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P G  G  G  G   A GP G  GPP   GPA  +G   +  PG      G+        
Sbjct: 1350 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1401

Query: 72   QGPSMGPPGYGGNP 85
                 GPPG+ G P
Sbjct: 1402 ----QGPPGHPGPP 1411



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G SG  G    +GP G PGPP   GPA   G      P       G  PG +  P G
Sbjct: 1073 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1130

Query: 74   PSMGPPGYGGNPSVRPGLAQSG 95
             S G PG  G P V+    + G
Sbjct: 1131 ES-GSPGIQGEPGVKGPRGERG 1151



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P+G  G+ G  G   A G  G  G P + GP    G    P P      PG +       
Sbjct: 1236 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1295

Query: 72   QGPSMGPPGYGGNPSVRPGL 91
                 GPPG  G P + PGL
Sbjct: 1296 ATGQAGPPGPVGPPGL-PGL 1314



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)

Query: 10   VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
            + P G  GA+G  G   A GP                G PGP    G P P    G+   
Sbjct: 1027 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1086

Query: 50   RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
              PM  PG   PR    P     PQGP     ++GPPG  G P  S  PG+
Sbjct: 1087 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1137



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
           V   G  G  G  G     GP G PGPP  MG     G+    +PG  YP        R 
Sbjct: 673 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 721

Query: 70  TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            P+G S+G PG+ G    +     SG    R    P
Sbjct: 722 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 756



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G SG  G +   GP G PG    P   GP    G    P P      PG  PG R
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 823

Query: 69  --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             +  QG + GPPG  G    +    ++G    R  P P
Sbjct: 824 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 861



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
           P G  G  G  G A   G  G PGP       P R G   G    + P+  A   +   +
Sbjct: 335 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 391

Query: 64  LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
           L  +R+  +GP  GP GY G P        PGL     D   + P   Q
Sbjct: 392 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 439



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
            S    G  G  G  G   A+G  G  GP    GPA  PG  GL   P       RPG   
Sbjct: 1239 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1297

Query: 66   GSRMTPQGPSMGPPGYGG 83
              +  P GP +GPPG  G
Sbjct: 1298 -GQAGPPGP-VGPPGLPG 1313



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
           G  G  G  G     G  G PGPP   G     G +    +PG + PR        PG+ 
Sbjct: 476 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 535

Query: 64  -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
             PG R    PQGP  S+GP G  G P       Q G   ++  P PQ
Sbjct: 536 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 577



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P+G  G  G  GA    G  GT G     GP   +GL     PG     P   PG    P
Sbjct: 756 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 804

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           +GP  GPPG  G P       + G       P P
Sbjct: 805 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
            SV   G  GA+G AG     GP G PG P   G A  +G    P        PG      
Sbjct: 1287 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1343

Query: 64   ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
               LPG + +P Q   MG PG  G   P   PGL
Sbjct: 1344 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1377



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
           ++ P G  G  G  G     G  G PG P + GP   +G      P     YP P  + G
Sbjct: 579 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 638

Query: 67  --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
                        +G   G PG+ G+  V+    + G+  SR    P+
Sbjct: 639 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 685



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
            + P G  G  G AG   A GP G PG    +GP   +G             PG+  P   
Sbjct: 1090 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1149

Query: 69   MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               +G S G PG  G P  +     +G D  +  P P
Sbjct: 1150 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1182



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
            P+G  G  G AG+   +GP G PGP                  +GP    G+ + P  +P
Sbjct: 927  PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 985

Query: 55   GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
            G A P PG+            PG + T       GPPG  G   P  +PG A +  +   
Sbjct: 986  GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1044

Query: 101  KRP 103
            + P
Sbjct: 1045 RGP 1047



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 10   VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
            + P G  G  G A   GA  A GPG      G  GPP   GP PG+ +   P+      R
Sbjct: 1369 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1427

Query: 61   PGMLPGSRMTPQGPSMGPPGYGGNP 85
               + GSR+  +  ++   G  G+P
Sbjct: 1428 RS-VDGSRLMQEDEAIPTGGAPGSP 1451



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
           G  G  G  G    +GP G PG   P   +GP    G+   P    M G   P+  + P 
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 556

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               P G   G PG  G P  +  +   G    + +P
Sbjct: 557 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 592



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
            P G  G  G  G    +G  G PGPP   GP    G            +PG   P     
Sbjct: 1167 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1226

Query: 71   PQGP--SMGPPGYGGNPSVRPGLAQSG 95
            P GP    GP G  G+   + G    G
Sbjct: 1227 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1253



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
            G  ++ P G  G  G +G+    G  G  GP    G     G    P  PG   P     
Sbjct: 1116 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1175

Query: 61   PGMLPGSRMTPQGPSMGPPGYGG 83
            P   PG    P  P  GPPG GG
Sbjct: 1176 PKGNPGPVGFPGDP--GPPGEGG 1196



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G     G  G PGPP   GP    G   +P P      PG  P     P+G
Sbjct: 1142 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1199

Query: 74   P--SMGPPGYGGNPSVRPG 90
               + G  G  G P  +PG
Sbjct: 1200 QDGAKGDRGEDGEPG-QPG 1217



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
            G AG  G  G     GP G  G P   G A   G    P  PG   P PG      +PG 
Sbjct: 908  GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 966

Query: 68   RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
            +  P GP+      GP G  G P+  PG+A    D+
Sbjct: 967  K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 1000



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
            P G  G +G  G     GP G PG P   GP PG+G  R    GA   R     PG  PG
Sbjct: 1164 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1217

Query: 67   SRMTPQGPSMGPPGYGG--NPSVRPG 90
            S   P G + GPPG  G   P+  PG
Sbjct: 1218 S-PGPTGEN-GPPGPLGKRGPAGSPG 1241



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G+ G  G +  LGP G  GP    GP PG+   R         R G   G+R  P
Sbjct: 414 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 463

Query: 72  QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P + G  G+ G P +       G   ++  P P
Sbjct: 464 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 498


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
           V P G AG +G  G     GP G PG     G A  +G    P P  A  + G       
Sbjct: 820 VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 879

Query: 65  PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
           PG R  P           +GPS GPPG  G+P  R      G      RP PQ
Sbjct: 880 PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 931



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G   +LGP G PGPP + G    QGL     PG   P+  + P     P
Sbjct: 516 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 567

Query: 72  QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
           QG    P M    GPPG+ G    P  +     SG       P P+ ++ V
Sbjct: 568 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 618



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
           PSG  G +G  G   A G GG  GPP R GP  P        +PG   P   + P  R  
Sbjct: 900 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 956

Query: 71  PQGPSMGPPGYGGNPSV 87
            QGP +G PG  G P V
Sbjct: 957 VQGP-VGLPGPAGPPGV 972



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
           + P G  G SG  G     GP G PGPP VR      GP    G    P P      PG 
Sbjct: 490 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 549

Query: 64  --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
             LPG    PQG ++GP G  G P  +PGL
Sbjct: 550 QGLPG----PQG-AIGPHGEKG-PQGKPGL 573



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P G  G  G  G   A GP G  GPP   GPA  +G   +  PG      G+        
Sbjct: 1329 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1380

Query: 72   QGPSMGPPGYGGNP 85
                 GPPG+ G P
Sbjct: 1381 ----QGPPGHPGPP 1390



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G SG  G    +GP G PGPP   GPA   G      P       G  PG +  P G
Sbjct: 1052 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1109

Query: 74   PSMGPPGYGGNPSVRPGLAQSG 95
             S G PG  G P V+    + G
Sbjct: 1110 ES-GSPGIQGEPGVKGPRGERG 1130



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P+G  G+ G  G   A G  G  G P + GP    G    P P      PG +       
Sbjct: 1215 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1274

Query: 72   QGPSMGPPGYGGNPSVRPGL 91
                 GPPG  G P + PGL
Sbjct: 1275 ATGQAGPPGPVGPPGL-PGL 1293



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)

Query: 10   VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
            + P G  GA+G  G   A GP                G PGP    G P P    G+   
Sbjct: 1006 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1065

Query: 50   RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
              PM  PG   PR    P     PQGP     ++GPPG  G P  S  PG+
Sbjct: 1066 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1116



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
           V   G  G  G  G     GP G PGPP  MG     G+    +PG  YP        R 
Sbjct: 652 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 700

Query: 70  TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            P+G S+G PG+ G    +     SG    R    P
Sbjct: 701 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 735



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G SG  G +   GP G PG    P   GP    G    P P      PG  PG R
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 802

Query: 69  --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             +  QG + GPPG  G    +    ++G    R  P P
Sbjct: 803 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 840



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
           P G  G  G  G A   G  G PGP       P R G   G    + P+  A   +   +
Sbjct: 314 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 370

Query: 64  LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
           L  +R+  +GP  GP GY G P        PGL     D   + P   Q
Sbjct: 371 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 418



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
            S    G  G  G  G   A+G  G  GP    GPA  PG  GL   P       RPG   
Sbjct: 1218 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1276

Query: 66   GSRMTPQGPSMGPPGYGG 83
              +  P GP +GPPG  G
Sbjct: 1277 -GQAGPPGP-VGPPGLPG 1292



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
           G  G  G  G     G  G PGPP   G     G +    +PG + PR        PG+ 
Sbjct: 455 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 514

Query: 64  -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
             PG R    PQGP  S+GP G  G P       Q G   ++  P PQ
Sbjct: 515 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 556



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P+G  G  G  GA    G  GT G     GP   +GL     PG     P   PG    P
Sbjct: 735 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 783

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           +GP  GPPG  G P       + G       P P
Sbjct: 784 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
            SV   G  GA+G AG     GP G PG P   G A  +G    P        PG      
Sbjct: 1266 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1322

Query: 64   ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
               LPG + +P Q   MG PG  G   P   PGL
Sbjct: 1323 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1356



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
           ++ P G  G  G  G     G  G PG P + GP   +G      P     YP P  + G
Sbjct: 558 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 617

Query: 67  --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
                        +G   G PG+ G+  V+    + G+  SR    P+
Sbjct: 618 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 664



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
            + P G  G  G AG   A GP G PG    +GP   +G             PG+  P   
Sbjct: 1069 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1128

Query: 69   MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               +G S G PG  G P  +     +G D  +  P P
Sbjct: 1129 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1161



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
            P+G  G  G AG+   +GP G PGP                  +GP    G+ + P  +P
Sbjct: 906  PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 964

Query: 55   GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
            G A P PG+            PG + T       GPPG  G   P  +PG A +  +   
Sbjct: 965  GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1023

Query: 101  KRP 103
            + P
Sbjct: 1024 RGP 1026



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 10   VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
            + P G  G  G A   GA  A GPG      G  GPP   GP PG+ +   P+      R
Sbjct: 1348 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1406

Query: 61   PGMLPGSRMTPQGPSMGPPGYGGNP 85
               + GSR+  +  ++   G  G+P
Sbjct: 1407 RS-VDGSRLMQEDEAIPTGGAPGSP 1430



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
           G  G  G  G    +GP G PG   P   +GP    G+   P    M G   P+  + P 
Sbjct: 476 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 535

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               P G   G PG  G P  +  +   G    + +P
Sbjct: 536 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 571



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
            P G  G  G  G    +G  G PGPP   GP    G            +PG   P     
Sbjct: 1146 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1205

Query: 71   PQGP--SMGPPGYGGNPSVRPGLAQSG 95
            P GP    GP G  G+   + G    G
Sbjct: 1206 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1232



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
            G  ++ P G  G  G +G+    G  G  GP    G     G    P  PG   P     
Sbjct: 1095 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1154

Query: 61   PGMLPGSRMTPQGPSMGPPGYGG 83
            P   PG    P  P  GPPG GG
Sbjct: 1155 PKGNPGPVGFPGDP--GPPGEGG 1175



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G     G  G PGPP   GP    G   +P P      PG  P     P+G
Sbjct: 1121 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1178

Query: 74   P--SMGPPGYGGNPSVRPG 90
               + G  G  G P  +PG
Sbjct: 1179 QDGAKGDRGEDGEPG-QPG 1196



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
           G AG  G  G     GP G  G P   G A   G    P  PG   P PG      +PG 
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 945

Query: 68  RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
           +  P GP+      GP G  G P+  PG+A    D+
Sbjct: 946 K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 979



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
            P G  G +G  G     GP G PG P   GP PG+G  R    GA   R     PG  PG
Sbjct: 1143 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1196

Query: 67   SRMTPQGPSMGPPGYGG--NPSVRPG 90
            S   P G + GPPG  G   P+  PG
Sbjct: 1197 S-PGPTGEN-GPPGPLGKRGPAGSPG 1220



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G+ G  G +  LGP G  GP    GP PG+   R         R G   G+R  P
Sbjct: 393 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 442

Query: 72  QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P + G  G+ G P +       G   ++  P P
Sbjct: 443 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 477


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
            V P G AG +G  G     GP G PG     G A  +G    P P  A  + G       
Sbjct: 927  VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 986

Query: 65   PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            PG R  P           +GPS GPPG  G+P  R      G      RP PQ
Sbjct: 987  PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 1038



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G   +LGP G PGPP + G    QGL     PG   P+  + P     P
Sbjct: 623 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 674

Query: 72  QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
           QG    P M    GPPG+ G    P  +     SG       P P+ ++ V
Sbjct: 675 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 725



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
            PSG  G +G  G   A G GG  GPP R GP  P        +PG   P   + P  R  
Sbjct: 1007 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 1063

Query: 71   PQGPSMGPPGYGGNPSV 87
             QGP +G PG  G P V
Sbjct: 1064 VQGP-VGLPGPAGPPGV 1079



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
           + P G  G SG  G     GP G PGPP VR      GP    G    P P      PG 
Sbjct: 597 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 656

Query: 64  --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
             LPG    PQG ++GP G  G P  +PGL
Sbjct: 657 QGLPG----PQG-AIGPHGEKG-PQGKPGL 680



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P G  G  G  G   A GP G  GPP   GPA  +G   +  PG      G+        
Sbjct: 1436 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1487

Query: 72   QGPSMGPPGYGGNP 85
                 GPPG+ G P
Sbjct: 1488 ----QGPPGHPGPP 1497



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G SG  G    +GP G PGPP   GPA   G      P       G  PG +  P G
Sbjct: 1159 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1216

Query: 74   PSMGPPGYGGNPSVRPGLAQSG 95
             S G PG  G P V+    + G
Sbjct: 1217 ES-GSPGIQGEPGVKGPRGERG 1237



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P+G  G+ G  G   A G  G  G P + GP    G    P P      PG +       
Sbjct: 1322 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1381

Query: 72   QGPSMGPPGYGGNPSVRPGL 91
                 GPPG  G P + PGL
Sbjct: 1382 ATGQAGPPGPVGPPGL-PGL 1400



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)

Query: 10   VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
            + P G  GA+G  G   A GP                G PGP    G P P    G+   
Sbjct: 1113 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1172

Query: 50   RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
              PM  PG   PR    P     PQGP     ++GPPG  G P  S  PG+
Sbjct: 1173 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1223



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
           V   G  G  G  G     GP G PGPP  MG     G+    +PG  YP        R 
Sbjct: 759 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 807

Query: 70  TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            P+G S+G PG+ G    +     SG    R    P
Sbjct: 808 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 842



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G SG  G +   GP G PG    P   GP    G    P P      PG  PG R
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 909

Query: 69  --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             +  QG + GPPG  G    +    ++G    R  P P
Sbjct: 910 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 947



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
           P G  G  G  G A   G  G PGP       P R G   G    + P+  A   +   +
Sbjct: 421 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 477

Query: 64  LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
           L  +R+  +GP  GP GY G P        PGL     D   + P   Q
Sbjct: 478 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 525



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
            S    G  G  G  G   A+G  G  GP    GPA  PG  GL   P       RPG   
Sbjct: 1325 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1383

Query: 66   GSRMTPQGPSMGPPGYGG 83
              +  P GP +GPPG  G
Sbjct: 1384 -GQAGPPGP-VGPPGLPG 1399



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
           G  G  G  G     G  G PGPP   G     G +    +PG + PR        PG+ 
Sbjct: 562 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 621

Query: 64  -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
             PG R    PQGP  S+GP G  G P       Q G   ++  P PQ
Sbjct: 622 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 663



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P+G  G  G  GA    G  GT G     GP   +GL     PG     P   PG    P
Sbjct: 842 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 890

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           +GP  GPPG  G P       + G       P P
Sbjct: 891 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 923



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
            SV   G  GA+G AG     GP G PG P   G A  +G    P        PG      
Sbjct: 1373 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1429

Query: 64   ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
               LPG + +P Q   MG PG  G   P   PGL
Sbjct: 1430 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1463



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
           ++ P G  G  G  G     G  G PG P + GP   +G      P     YP P  + G
Sbjct: 665 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 724

Query: 67  --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
                        +G   G PG+ G+  V+    + G+  SR    P+
Sbjct: 725 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 771



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
            + P G  G  G AG   A GP G PG    +GP   +G             PG+  P   
Sbjct: 1176 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1235

Query: 69   MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               +G S G PG  G P  +     +G D  +  P P
Sbjct: 1236 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1268



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
            P+G  G  G AG+   +GP G PGP                  +GP    G+ + P  +P
Sbjct: 1013 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 1071

Query: 55   GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
            G A P PG+            PG + T       GPPG  G   P  +PG A +  +   
Sbjct: 1072 GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1130

Query: 101  KRP 103
            + P
Sbjct: 1131 RGP 1133



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 10   VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
            + P G  G  G A   GA  A GPG      G  GPP   GP PG+ +   P+      R
Sbjct: 1455 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1513

Query: 61   PGMLPGSRMTPQGPSMGPPGYGGNP 85
               + GSR+  +  ++   G  G+P
Sbjct: 1514 RS-VDGSRLMQEDEAIPTGGAPGSP 1537



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 14  GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
           G  G  G  G    +GP G PG   P   +GP    G+   P    M G   P+  + P 
Sbjct: 583 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 642

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
               P G   G PG  G P  +  +   G    + +P
Sbjct: 643 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 678



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
            P G  G  G  G    +G  G PGPP   GP    G            +PG   P     
Sbjct: 1253 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1312

Query: 71   PQGP--SMGPPGYGGNPSVRPGLAQSG 95
            P GP    GP G  G+   + G    G
Sbjct: 1313 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1339



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
            G  ++ P G  G  G +G+    G  G  GP    G     G    P  PG   P     
Sbjct: 1202 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1261

Query: 61   PGMLPGSRMTPQGPSMGPPGYGG 83
            P   PG    P  P  GPPG GG
Sbjct: 1262 PKGNPGPVGFPGDP--GPPGEGG 1282



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G     G  G PGPP   GP    G   +P P      PG  P     P+G
Sbjct: 1228 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1285

Query: 74   P--SMGPPGYGGNPSVRPG 90
               + G  G  G P  +PG
Sbjct: 1286 QDGAKGDRGEDGEPG-QPG 1303



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
            G AG  G  G     GP G  G P   G A   G    P  PG   P PG      +PG 
Sbjct: 994  GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 1052

Query: 68   RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
            +  P GP+      GP G  G P+  PG+A    D+
Sbjct: 1053 K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 1086



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
            P G  G +G  G     GP G PG P   GP PG+G  R    GA   R     PG  PG
Sbjct: 1250 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1303

Query: 67   SRMTPQGPSMGPPGYGG--NPSVRPG 90
            S   P G + GPPG  G   P+  PG
Sbjct: 1304 S-PGPTGEN-GPPGPLGKRGPAGSPG 1327



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G+ G  G +  LGP G  GP    GP PG+   R         R G   G+R  P
Sbjct: 500 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 549

Query: 72  QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P + G  G+ G P +       G   ++  P P
Sbjct: 550 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 584


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
            P G AGA G  G   A G  G  GPP + GP   QG    P P      PG      LPG
Sbjct: 1376 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435

Query: 67   S--RMTPQGPSMGPPGYGG 83
            +  +  P GP MGPPG  G
Sbjct: 1436 AAGQDGPPGP-MGPPGLPG 1453



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
           G  G  G AG    LGP GTPG P + G       P P   +     PG       P P 
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 711

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
            LPG    PQGP +GPPG  G P  +PGLA
Sbjct: 712 GLPG----PQGP-IGPPGEKG-PQGKPGLA 735



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
            V P G  G +G  G     GP G PG     G A  +G    P P              +
Sbjct: 981  VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 1040

Query: 59   PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P    LPG++  P     +GP  GPPG  G+P  R     +G      RP PQ
Sbjct: 1041 PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1092



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 12   PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
            P+G  G+ G  G     GP GT      PGPP   GP   QG    P P      PG   
Sbjct: 896  PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955

Query: 64   ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                PG R  T      GPPG GG    +    ++G    R  P P
Sbjct: 956  LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 1001



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
            P G  G+ GG G     G  G PGPP   G    +G       +  PGAA P     P  
Sbjct: 1253 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1312

Query: 68   RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
               P+G + GP G+ G+P        +G D
Sbjct: 1313 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1341



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
            P G  G+ G  G+A   GP G PG P   GP        APG+   + P        P  
Sbjct: 1064 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1123

Query: 64   LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
            LPG    P GP+ G PG  G+      PG   S  D+    P
Sbjct: 1124 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1160



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G  G  G    +GP G P   GP   +GP    G    P        PG  P   
Sbjct: 635 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 692

Query: 69  MTPQGPSMGPPGYGGNP 85
           M PQG   GPPG  GNP
Sbjct: 693 MGPQG-EPGPPGQQGNP 708



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
           P+G  G SG AG    LG  G PG P R GP    G      PGA           +PG 
Sbjct: 833 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 889

Query: 64  LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P  +  P GP     + GP G  G      G    G    R    PQ
Sbjct: 890 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 936



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
            G  GA G  G    +G  G PGPP   G     G    PM  PG   PR    P     P
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1250

Query: 72   QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
            QGP             G PG  GNP   PG A  G
Sbjct: 1251 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1284



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  GA G  G     GP G PGPP   GP   +G   S  P       G LPG    P G
Sbjct: 1492 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1546

Query: 74   PSMGPPG 80
             S GPPG
Sbjct: 1547 -SPGPPG 1552



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
           G  G  G  G     GP G  GPP   GP    GL  + +PGA  P PG  PG       
Sbjct: 700 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 755

Query: 69  ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
              + P GP  GP GY G   V+      G+  S+
Sbjct: 756 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 789



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 3    ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
            AR       P G +G  G  G     GP G       PGP    GP    GL   P    
Sbjct: 905  ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 964

Query: 53   ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
                 G   P PG  PG  + PQGP+            GPPG  G   + PG A  G + 
Sbjct: 965  ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 1018

Query: 99   SRKRPAPQQI 108
            ++  P PQ I
Sbjct: 1019 AKGDPGPQGI 1028



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
           P G AG +G  G     GP G PG P   GP PG    R  +PGA   P P   PG+ + 
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 505

Query: 71  PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
                M P  YGG+ S  P +      AQ+ + Q+R
Sbjct: 506 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 536



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
           SG  G  G  G     GP G PG   R G   G+G+     PGA   R     PG LPG 
Sbjct: 567 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 623

Query: 68  R-----MTPQGPSMGPPGYGG 83
           +       PQGP  GPPG  G
Sbjct: 624 KGHRGERGPQGPP-GPPGDDG 643



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
            P G  G  G AG   A GP G  GPP   GP    G    P+     P P   PG     
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1341

Query: 67   ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
                         +  P GPS      GPPG  G P       + G
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1387



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G+  A G GG PGP   +GP    GL     PG   P+           +G
Sbjct: 1483 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1537

Query: 74   PS--MGPPGYGGNP 85
             S   GPPG  G P
Sbjct: 1538 DSGLPGPPGSPGPP 1551



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
            +  P G  G  G  G     GP G    PGPP   GPA   G+         PG   P P
Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1359

Query: 62   GMLPGSRMTPQGP--SMGPPGYGG 83
            G  P     P GP    GPPG  G
Sbjct: 1360 G--PSGEAGPPGPPGKRGPPGAAG 1381



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
           +G  G  GG G++ A G  G PGP    GP   QG            RPG   G  M  +
Sbjct: 549 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 605

Query: 73  GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             + G  G+ G P +       G    +  P P
Sbjct: 606 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
            P G  G  G  G     G  G  GPP  MGP    GL   P        PG++    P  
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1477

Query: 68   RMTPQGPSMGPPGYGGNPSVR 88
                +G   G PG  G+P  +
Sbjct: 1478 EQGEKG-DRGLPGTQGSPGAK 1497



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
           + P G  G +G  G     GP G PG P   G P P            G G     +   
Sbjct: 465 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524

Query: 57  AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
                 +L  +R+  +GP  GP G  G P    G   SG       P PQ  + VQ
Sbjct: 525 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 579



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
            V P G  G  G  G     G  G  GPP  +G   G G    P        PG      P
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1286

Query: 66   GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                  +G + GPPG  G P  +      G D  +  P P
Sbjct: 1287 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1322



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
            P G  G  G  G A   G  G PGPP   GP PG+ +   P+
Sbjct: 1520 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1560



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
           + P G  G  G  G A   G  G PG P + G +  +G    P P     YP P G+   
Sbjct: 720 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             +     S G  G  G P  +  +   G
Sbjct: 780 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 808



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 13   SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
            +G  G  G AG     G  G PGP    G     G    P P      PG+   PGS+  
Sbjct: 1404 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1463

Query: 71   PQGPSM----GPPGYGGNPSVR 88
               P +    GPPG  G    R
Sbjct: 1464 KGHPGLIGLIGPPGEQGEKGDR 1485



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G    +GP G  GP    GP    G    P P       G L    +    
Sbjct: 802 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858

Query: 74  PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
              GP G  G P       + G      +P P+
Sbjct: 859 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 891



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 4    RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
            R    +  P G  G  G  G     G  G PG     GPA   G+ + P  +PG A P  
Sbjct: 1074 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1132

Query: 60   ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
                         PG         +    GPPG  G P   PG+A
Sbjct: 1133 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1176



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
            G  G  G  G+    G  G PGPP   GP    G+           + GM       G+R
Sbjct: 1141 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1200

Query: 69   MTPQGPSMGPPGYGGNP 85
              P  P  GP G  G P
Sbjct: 1201 GFPGPP--GPIGLQGLP 1215



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
            V   G  GA+G  G    +GP G P                     GPP   G    +GL
Sbjct: 1428 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1487

Query: 49   YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
              +   PGA     G +PG    P GP +GPPG  G P
Sbjct: 1488 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1518



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
           + P G  G  G  G A   GP G PGP  + G     G+   P  PG   P+     GS 
Sbjct: 816 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 867

Query: 69  MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P  P      G  G  G P  R     +G   SR    P
Sbjct: 868 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 908


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
            P G AGA G  G   A G  G  GPP + GP   QG    P P      PG      LPG
Sbjct: 1325 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384

Query: 67   S--RMTPQGPSMGPPGYGG 83
            +  +  P GP MGPPG  G
Sbjct: 1385 AAGQDGPPGP-MGPPGLPG 1402



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
           G  G  G AG    LGP GTPG P + G       P P   +     PG       P P 
Sbjct: 601 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 660

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
            LPG    PQGP +GPPG  G P  +PGLA
Sbjct: 661 GLPG----PQGP-IGPPGEKG-PQGKPGLA 684



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
            V P G  G +G  G     GP G PG     G A  +G    P P              +
Sbjct: 930  VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 989

Query: 59   PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P    LPG++  P     +GP  GPPG  G+P  R     +G      RP PQ
Sbjct: 990  PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1041



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
           P+G  G+ G  G     GP GT      PGPP   GP   QG    P P      PG   
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904

Query: 64  ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               PG R  T      GPPG GG    +    ++G    R  P P
Sbjct: 905 LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 950



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
            P G  G+ GG G     G  G PGPP   G    +G       +  PGAA P     P  
Sbjct: 1202 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1261

Query: 68   RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
               P+G + GP G+ G+P        +G D
Sbjct: 1262 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1290



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
            P G  G+ G  G+A   GP G PG P   GP        APG+   + P        P  
Sbjct: 1013 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1072

Query: 64   LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
            LPG    P GP+ G PG  G+      PG   S  D+    P
Sbjct: 1073 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1109



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G  G  G    +GP G P   GP   +GP    G    P        PG  P   
Sbjct: 584 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 641

Query: 69  MTPQGPSMGPPGYGGNP 85
           M PQG   GPPG  GNP
Sbjct: 642 MGPQG-EPGPPGQQGNP 657



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
           P+G  G SG AG    LG  G PG P R GP    G      PGA           +PG 
Sbjct: 782 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 838

Query: 64  LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P  +  P GP     + GP G  G      G    G    R    PQ
Sbjct: 839 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 885



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
            G  GA G  G    +G  G PGPP   G     G    PM  PG   PR    P     P
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1199

Query: 72   QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
            QGP             G PG  GNP   PG A  G
Sbjct: 1200 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1233



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  GA G  G     GP G PGPP   GP   +G   S  P       G LPG    P G
Sbjct: 1441 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1495

Query: 74   PSMGPPG 80
             S GPPG
Sbjct: 1496 -SPGPPG 1501



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
           G  G  G  G     GP G  GPP   GP    GL  + +PGA  P PG  PG       
Sbjct: 649 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 704

Query: 69  ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
              + P GP  GP GY G   V+      G+  S+
Sbjct: 705 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 738



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 3   ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
           AR       P G +G  G  G     GP G       PGP    GP    GL   P    
Sbjct: 854 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 913

Query: 53  ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
                G   P PG  PG  + PQGP+            GPPG  G   + PG A  G + 
Sbjct: 914 ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 967

Query: 99  SRKRPAPQQI 108
           ++  P PQ I
Sbjct: 968 AKGDPGPQGI 977



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
           P G AG +G  G     GP G PG P   GP PG    R  +PGA   P P   PG+ + 
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 454

Query: 71  PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
                M P  YGG+ S  P +      AQ+ + Q+R
Sbjct: 455 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 485



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
           SG  G  G  G     GP G PG   R G   G+G+     PGA   R     PG LPG 
Sbjct: 516 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 572

Query: 68  R-----MTPQGPSMGPPGYGG 83
           +       PQGP  GPPG  G
Sbjct: 573 KGHRGERGPQGPP-GPPGDDG 592



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
            P G  G  G AG   A GP G  GPP   GP    G    P+     P P   PG     
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1290

Query: 67   ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
                         +  P GPS      GPPG  G P       + G
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1336



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G+  A G GG PGP   +GP    GL     PG   P+           +G
Sbjct: 1432 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1486

Query: 74   PS--MGPPGYGGNP 85
             S   GPPG  G P
Sbjct: 1487 DSGLPGPPGSPGPP 1500



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
            +  P G  G  G  G     GP G    PGPP   GPA   G+         PG   P P
Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1308

Query: 62   GMLPGSRMTPQGP--SMGPPGYGG 83
            G  P     P GP    GPPG  G
Sbjct: 1309 G--PSGEAGPPGPPGKRGPPGAAG 1330



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
           +G  G  GG G++ A G  G PGP    GP   QG            RPG   G  M  +
Sbjct: 498 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 554

Query: 73  GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             + G  G+ G P +       G    +  P P
Sbjct: 555 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
            P G  G  G  G     G  G  GPP  MGP    GL   P        PG++    P  
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1426

Query: 68   RMTPQGPSMGPPGYGGNPSVR 88
                +G   G PG  G+P  +
Sbjct: 1427 EQGEKG-DRGLPGTQGSPGAK 1446



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
           + P G  G +G  G     GP G PG P   G P P            G G     +   
Sbjct: 414 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473

Query: 57  AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
                 +L  +R+  +GP  GP G  G P    G   SG       P PQ  + VQ
Sbjct: 474 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 528



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
            V P G  G  G  G     G  G  GPP  +G   G G    P        PG      P
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1235

Query: 66   GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                  +G + GPPG  G P  +      G D  +  P P
Sbjct: 1236 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1271



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
            P G  G  G  G A   G  G PGPP   GP PG+ +   P+
Sbjct: 1469 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1509



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
           + P G  G  G  G A   G  G PG P + G +  +G    P P     YP P G+   
Sbjct: 669 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             +     S G  G  G P  +  +   G
Sbjct: 729 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 757



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 13   SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
            +G  G  G AG     G  G PGP    G     G    P P      PG+   PGS+  
Sbjct: 1353 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1412

Query: 71   PQGPSM----GPPGYGGNPSVR 88
               P +    GPPG  G    R
Sbjct: 1413 KGHPGLIGLIGPPGEQGEKGDR 1434



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G    +GP G  GP    GP    G    P P       G L    +    
Sbjct: 751 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807

Query: 74  PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
              GP G  G P       + G      +P P+
Sbjct: 808 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 840



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 4    RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
            R    +  P G  G  G  G     G  G PG     GPA   G+ + P  +PG A P  
Sbjct: 1023 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1081

Query: 60   ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
                         PG         +    GPPG  G P   PG+A
Sbjct: 1082 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1125



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
            G  G  G  G+    G  G PGPP   GP    G+           + GM       G+R
Sbjct: 1090 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1149

Query: 69   MTPQGPSMGPPGYGGNP 85
              P  P  GP G  G P
Sbjct: 1150 GFPGPP--GPIGLQGLP 1164



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
            V   G  GA+G  G    +GP G P                     GPP   G    +GL
Sbjct: 1377 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1436

Query: 49   YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
              +   PGA     G +PG    P GP +GPPG  G P
Sbjct: 1437 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1467



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
           + P G  G  G  G A   GP G PGP  + G     G+   P  PG   P+     GS 
Sbjct: 765 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 816

Query: 69  MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P  P      G  G  G P  R     +G   SR    P
Sbjct: 817 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 857


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
            P G AGA G  G   A G  G  GPP + GP   QG    P P      PG      LPG
Sbjct: 1364 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423

Query: 67   S--RMTPQGPSMGPPGYGG 83
            +  +  P GP MGPPG  G
Sbjct: 1424 AAGQDGPPGP-MGPPGLPG 1441



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
           G  G  G AG    LGP GTPG P + G       P P   +     PG       P P 
Sbjct: 640 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 699

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
            LPG    PQGP +GPPG  G P  +PGLA
Sbjct: 700 GLPG----PQGP-IGPPGEKG-PQGKPGLA 723



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
            V P G  G +G  G     GP G PG     G A  +G    P P              +
Sbjct: 969  VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 1028

Query: 59   PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P    LPG++  P     +GP  GPPG  G+P  R     +G      RP PQ
Sbjct: 1029 PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1080



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 12  PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
           P+G  G+ G  G     GP GT      PGPP   GP   QG    P P      PG   
Sbjct: 884 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943

Query: 64  ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               PG R  T      GPPG GG    +    ++G    R  P P
Sbjct: 944 LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 989



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
            P G  G+ GG G     G  G PGPP   G    +G       +  PGAA P     P  
Sbjct: 1241 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1300

Query: 68   RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
               P+G + GP G+ G+P        +G D
Sbjct: 1301 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1329



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
            P G  G+ G  G+A   GP G PG P   GP        APG+   + P        P  
Sbjct: 1052 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1111

Query: 64   LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
            LPG    P GP+ G PG  G+      PG   S  D+    P
Sbjct: 1112 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1148



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 12  PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           P G  G  G  G    +GP G P   GP   +GP    G    P        PG  P   
Sbjct: 623 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 680

Query: 69  MTPQGPSMGPPGYGGNP 85
           M PQG   GPPG  GNP
Sbjct: 681 MGPQG-EPGPPGQQGNP 696



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
           P+G  G SG AG    LG  G PG P R GP    G      PGA           +PG 
Sbjct: 821 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 877

Query: 64  LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
            P  +  P GP     + GP G  G      G    G    R    PQ
Sbjct: 878 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 924



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
            G  GA G  G    +G  G PGPP   G     G    PM  PG   PR    P     P
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1238

Query: 72   QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
            QGP             G PG  GNP   PG A  G
Sbjct: 1239 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1272



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  GA G  G     GP G PGPP   GP   +G   S  P       G LPG    P G
Sbjct: 1480 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1534

Query: 74   PSMGPPG 80
             S GPPG
Sbjct: 1535 -SPGPPG 1540



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
           G  G  G  G     GP G  GPP   GP    GL  + +PGA  P PG  PG       
Sbjct: 688 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 743

Query: 69  ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
              + P GP  GP GY G   V+      G+  S+
Sbjct: 744 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 777



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)

Query: 3    ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
            AR       P G +G  G  G     GP G       PGP    GP    GL   P    
Sbjct: 893  ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 952

Query: 53   ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
                 G   P PG  PG  + PQGP+            GPPG  G   + PG A  G + 
Sbjct: 953  ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 1006

Query: 99   SRKRPAPQQI 108
            ++  P PQ I
Sbjct: 1007 AKGDPGPQGI 1016



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
           P G AG +G  G     GP G PG P   GP PG    R  +PGA   P P   PG+ + 
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 493

Query: 71  PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
                M P  YGG+ S  P +      AQ+ + Q+R
Sbjct: 494 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 524



 Score = 36.6 bits (83), Expect = 0.051
 Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
           SG  G  G  G     GP G PG   R G   G+G+     PGA   R     PG LPG 
Sbjct: 555 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 611

Query: 68  R-----MTPQGPSMGPPGYGG 83
           +       PQGP  GPPG  G
Sbjct: 612 KGHRGERGPQGPP-GPPGDDG 631



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
            P G  G  G AG   A GP G  GPP   GP    G    P+     P P   PG     
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1329

Query: 67   ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
                         +  P GPS      GPPG  G P       + G
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1375



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
            G  G  G  G+  A G GG PGP   +GP    GL     PG   P+           +G
Sbjct: 1471 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1525

Query: 74   PS--MGPPGYGGNP 85
             S   GPPG  G P
Sbjct: 1526 DSGLPGPPGSPGPP 1539



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
            +  P G  G  G  G     GP G    PGPP   GPA   G+         PG   P P
Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1347

Query: 62   GMLPGSRMTPQGP--SMGPPGYGG 83
            G  P     P GP    GPPG  G
Sbjct: 1348 G--PSGEAGPPGPPGKRGPPGAAG 1369



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
           +G  G  GG G++ A G  G PGP    GP   QG            RPG   G  M  +
Sbjct: 537 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 593

Query: 73  GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             + G  G+ G P +       G    +  P P
Sbjct: 594 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
            P G  G  G  G     G  G  GPP  MGP    GL   P        PG++    P  
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1465

Query: 68   RMTPQGPSMGPPGYGGNPSVR 88
                +G   G PG  G+P  +
Sbjct: 1466 EQGEKG-DRGLPGTQGSPGAK 1485



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
           + P G  G +G  G     GP G PG P   G P P            G G     +   
Sbjct: 453 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512

Query: 57  AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
                 +L  +R+  +GP  GP G  G P    G   SG       P PQ  + VQ
Sbjct: 513 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 567



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
            V P G  G  G  G     G  G  GPP  +G   G G    P        PG      P
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1274

Query: 66   GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                  +G + GPPG  G P  +      G D  +  P P
Sbjct: 1275 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1310



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
            P G  G  G  G A   G  G PGPP   GP PG+ +   P+
Sbjct: 1508 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1548



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
           + P G  G  G  G A   G  G PG P + G +  +G    P P     YP P G+   
Sbjct: 708 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
             +     S G  G  G P  +  +   G
Sbjct: 768 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 796



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 13   SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
            +G  G  G AG     G  G PGP    G     G    P P      PG+   PGS+  
Sbjct: 1392 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1451

Query: 71   PQGPSM----GPPGYGGNPSVR 88
               P +    GPPG  G    R
Sbjct: 1452 KGHPGLIGLIGPPGEQGEKGDR 1473



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G    +GP G  GP    GP    G    P P       G L    +    
Sbjct: 790 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846

Query: 74  PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
              GP G  G P       + G      +P P+
Sbjct: 847 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 879



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 4    RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
            R    +  P G  G  G  G     G  G PG     GPA   G+ + P  +PG A P  
Sbjct: 1062 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1120

Query: 60   ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
                         PG         +    GPPG  G P   PG+A
Sbjct: 1121 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1164



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
            G  G  G  G+    G  G PGPP   GP    G+           + GM       G+R
Sbjct: 1129 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1188

Query: 69   MTPQGPSMGPPGYGGNP 85
              P  P  GP G  G P
Sbjct: 1189 GFPGPP--GPIGLQGLP 1203



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)

Query: 10   VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
            V   G  GA+G  G    +GP G P                     GPP   G    +GL
Sbjct: 1416 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1475

Query: 49   YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
              +   PGA     G +PG    P GP +GPPG  G P
Sbjct: 1476 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1506



 Score = 29.6 bits (65), Expect = 6.2
 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
           + P G  G  G  G A   GP G PGP  + G     G+   P  PG   P+     GS 
Sbjct: 804 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 855

Query: 69  MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             P  P      G  G  G P  R     +G   SR    P
Sbjct: 856 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 896


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 14   GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
            G AGA G +G A A GP G PGPP   GP PG GL      M G+  P       S   P
Sbjct: 989  GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 1046

Query: 72   QGPSMGPPGYGGNPSVRPGL 91
            QGP  G PG  G+P V PGL
Sbjct: 1047 QGPP-GLPGLKGDPGV-PGL 1064



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
           SV   GG    GG       G  G PGPP R GP         PG     SP+ G A P 
Sbjct: 740 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 796

Query: 61  PGMLPGSRMTPQGPSMGPPGYGGNP 85
              +PG    PQGP  GPPG  G P
Sbjct: 797 LQTVPG----PQGPP-GPPGRDGTP 816



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 18   ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
            AS G G     GP G PGPP   GP PG  +Y S +   ++ P P  LPG++  P GP  
Sbjct: 1244 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 1298

Query: 75   ---SMGPPGYGG 83
                +GPPG  G
Sbjct: 1299 AKGEVGPPGPPG 1310



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P G  G  G  G A A G  G+ G P   GPA  +G   S + GA  P P   PG    P
Sbjct: 963  PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 1011

Query: 72   QGPSMGPPGYG 82
             GP  GPPG G
Sbjct: 1012 PGPP-GPPGPG 1021



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 14   GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
            G  G  GG G   ++  GP G PGP    G P P G+ +   P P      PG+    R 
Sbjct: 1337 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 1396

Query: 70   TPQGPSMGPPG 80
             P GP  GPPG
Sbjct: 1397 GPPGPP-GPPG 1406



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 17  GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
           G+  G    A  GP G PGPP   G    PG+    G+  S +PG A   PG +PG    
Sbjct: 888 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 945

Query: 71  PQGPSM----GPPGYGGNP 85
           P  P +    GPPG  G P
Sbjct: 946 PGFPGLPGPPGPPGREGPP 964



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
           G  G +G  G+    GP G P P   +GPA G  L   P P      PG    PG    P
Sbjct: 764 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 822

Query: 72  QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
             P         GP G+ G P           PG+ + G    +  P P
Sbjct: 823 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 871



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)

Query: 4    RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
            R G  S    G AG  G  G     G  G    PGPP R GP              APG 
Sbjct: 922  RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 981

Query: 46   QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
            +G   +P P  A    G+   PG    P GP  GPPG  G P   PGL  +G D      
Sbjct: 982  KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 1033

Query: 104  AP 105
             P
Sbjct: 1034 GP 1035



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 12  PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
           P G  G  G     G  ++   GP G PG P R GP    GL   P P      PG    
Sbjct: 910 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 969

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
                +  + G  G  G P       +SG+
Sbjct: 970 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 999



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 5    AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
            AGF  +  SGG   S    A +A GP G PG P   G     GL  +     A   PG  
Sbjct: 1024 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 1080

Query: 64   -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
             LPG      PQGP    G  G  G+P  + G+ Q G+      P P
Sbjct: 1081 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 1126



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     GP G PG P  +GP   +G      PG     P   PG    PQG
Sbjct: 820 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 867

Query: 74  PSMGPPG 80
           P  GPPG
Sbjct: 868 PP-GPPG 873



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)

Query: 11   APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
            +P GGA      GA    G  G PGP  R G       Y+  +     P RPGM  L G 
Sbjct: 1185 SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 1237

Query: 68   RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
            +  P   S+        GPPG  G P   PG  +  S +     RP P
Sbjct: 1238 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 1284



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
            P G  G  G  G   A G  G PGPP +                            G   
Sbjct: 1284 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1343

Query: 45   GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
            G G + S +PG    P P   PG    P+G S+    GPPG    P   PG+   G    
Sbjct: 1344 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 1398

Query: 100  RKRPAP 105
               P P
Sbjct: 1399 PGPPGP 1404



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)

Query: 12   PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
            P G  G+ G        G G     GP G PGP V +          P P      +  P
Sbjct: 1094 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 1153

Query: 55   GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
            G A P+           PG       PGS  +P G ++GP        PG+ G P    R
Sbjct: 1154 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 1213

Query: 89   PG 90
            PG
Sbjct: 1214 PG 1215



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
            G+  +    G    G  G     GP G         PGPP   GP    G +R  +   +
Sbjct: 1363 GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1419

Query: 58   YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
             P P   PG    P GP  GPPG  G +  VR     Q+ + Q  + P    I   +Q+ 
Sbjct: 1420 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1471

Query: 116  VQNRNHNAKKKKMADKILP 134
            +  R  N  +K   +   P
Sbjct: 1472 LYVRVQNGFRKVQLEARTP 1490


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
           G AGA G +G A A GP G PGPP   GP PG GL      M G+  P       S   P
Sbjct: 574 GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 631

Query: 72  QGPSMGPPGYGGNPSVRPGL 91
           QGP  G PG  G+P V PGL
Sbjct: 632 QGPP-GLPGLKGDPGV-PGL 649



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
           SV   GG    GG       G  G PGPP R GP         PG     SP+ G A P 
Sbjct: 325 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 381

Query: 61  PGMLPGSRMTPQGPSMGPPGYGGNP 85
              +PG    PQGP  GPPG  G P
Sbjct: 382 LQTVPG----PQGPP-GPPGRDGTP 401



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 18  ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
           AS G G     GP G PGPP   GP PG  +Y S +   ++ P P  LPG++  P GP  
Sbjct: 829 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 883

Query: 75  ---SMGPPGYGG 83
               +GPPG  G
Sbjct: 884 AKGEVGPPGPPG 895



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G A A G  G+ G P   GPA  +G   S + GA  P P   PG    P
Sbjct: 548 PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 596

Query: 72  QGPSMGPPGYG 82
            GP  GPPG G
Sbjct: 597 PGPP-GPPGPG 606



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 14  GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
           G  G  GG G   ++  GP G PGP    G P P G+ +   P P      PG+    R 
Sbjct: 922 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 981

Query: 70  TPQGPSMGPPG 80
            P GP  GPPG
Sbjct: 982 GPPGPP-GPPG 991



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 17  GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
           G+  G    A  GP G PGPP   G    PG+    G+  S +PG A   PG +PG    
Sbjct: 473 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 530

Query: 71  PQGPSM----GPPGYGGNP 85
           P  P +    GPPG  G P
Sbjct: 531 PGFPGLPGPPGPPGREGPP 549



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
           G  G +G  G+    GP G P P   +GPA G  L   P P      PG    PG    P
Sbjct: 349 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 407

Query: 72  QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
             P         GP G+ G P           PG+ + G    +  P P
Sbjct: 408 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 456



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)

Query: 4   RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
           R G  S    G AG  G  G     G  G    PGPP R GP              APG 
Sbjct: 507 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 566

Query: 46  QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
           +G   +P P  A    G+   PG    P GP  GPPG  G P   PGL  +G D      
Sbjct: 567 KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 618

Query: 104 AP 105
            P
Sbjct: 619 GP 620



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 12  PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
           P G  G  G     G  ++   GP G PG P R GP    GL   P P      PG    
Sbjct: 495 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 554

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
                +  + G  G  G P       +SG+
Sbjct: 555 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 584



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 5   AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
           AGF  +  SGG   S    A +A GP G PG P   G     GL  +     A   PG  
Sbjct: 609 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 665

Query: 64  -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            LPG      PQGP    G  G  G+P  + G+ Q G+      P P
Sbjct: 666 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 711



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     GP G PG P  +GP   +G      PG     P   PG    PQG
Sbjct: 405 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 452

Query: 74  PSMGPPG 80
           P  GPPG
Sbjct: 453 PP-GPPG 458



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)

Query: 11  APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
           +P GGA      GA    G  G PGP  R G       Y+  +     P RPGM  L G 
Sbjct: 770 SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 822

Query: 68  RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
           +  P   S+        GPPG  G P   PG  +  S +     RP P
Sbjct: 823 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 869



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
           P G  G  G  G   A G  G PGPP +                            G   
Sbjct: 869 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 928

Query: 45  GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
           G G + S +PG    P P   PG    P+G S+    GPPG    P   PG+   G    
Sbjct: 929 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 983

Query: 100 RKRPAP 105
              P P
Sbjct: 984 PGPPGP 989



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)

Query: 12  PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
           P G  G+ G        G G     GP G PGP V +          P P      +  P
Sbjct: 679 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 738

Query: 55  GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
           G A P+           PG       PGS  +P G ++GP        PG+ G P    R
Sbjct: 739 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 798

Query: 89  PG 90
           PG
Sbjct: 799 PG 800



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
            G+  +    G    G  G     GP G         PGPP   GP    G +R  +   +
Sbjct: 948  GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1004

Query: 58   YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
             P P   PG    P GP  GPPG  G +  VR     Q+ + Q  + P    I   +Q+ 
Sbjct: 1005 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1056

Query: 116  VQNRNHNAKKKKMADKILP 134
            +  R  N  +K   +   P
Sbjct: 1057 LYVRVQNGFRKVQLEARTP 1075


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
           G AGA G +G A A GP G PGPP   GP PG GL      M G+  P       S   P
Sbjct: 754 GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 811

Query: 72  QGPSMGPPGYGGNPSVRPGL 91
           QGP  G PG  G+P V PGL
Sbjct: 812 QGPP-GLPGLKGDPGV-PGL 829



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
           SV   GG    GG       G  G PGPP R GP         PG     SP+ G A P 
Sbjct: 505 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 561

Query: 61  PGMLPGSRMTPQGPSMGPPGYGGNP 85
              +PG    PQGP  GPPG  G P
Sbjct: 562 LQTVPG----PQGPP-GPPGRDGTP 581



 Score = 37.4 bits (85), Expect = 0.030
 Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 18   ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
            AS G G     GP G PGPP   GP PG  +Y S +   ++ P P  LPG++  P GP  
Sbjct: 1009 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 1063

Query: 75   ---SMGPPGYGG 83
                +GPPG  G
Sbjct: 1064 AKGEVGPPGPPG 1075



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G A A G  G+ G P   GPA  +G   S + GA  P P   PG    P
Sbjct: 728 PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 776

Query: 72  QGPSMGPPGYG 82
            GP  GPPG G
Sbjct: 777 PGPP-GPPGPG 786



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 14   GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
            G  G  GG G   ++  GP G PGP    G P P G+ +   P P      PG+    R 
Sbjct: 1102 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 1161

Query: 70   TPQGPSMGPPG 80
             P GP  GPPG
Sbjct: 1162 GPPGPP-GPPG 1171



 Score = 35.4 bits (80), Expect = 0.11
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 17  GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
           G+  G    A  GP G PGPP   G    PG+    G+  S +PG A   PG +PG    
Sbjct: 653 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 710

Query: 71  PQGPSM----GPPGYGGNP 85
           P  P +    GPPG  G P
Sbjct: 711 PGFPGLPGPPGPPGREGPP 729



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
           G  G +G  G+    GP G P P   +GPA G  L   P P      PG    PG    P
Sbjct: 529 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 587

Query: 72  QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
             P         GP G+ G P           PG+ + G    +  P P
Sbjct: 588 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 636



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)

Query: 4   RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
           R G  S    G AG  G  G     G  G    PGPP R GP              APG 
Sbjct: 687 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 746

Query: 46  QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
           +G   +P P  A    G+   PG    P GP  GPPG  G P   PGL  +G D      
Sbjct: 747 KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 798

Query: 104 AP 105
            P
Sbjct: 799 GP 800



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 12  PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
           P G  G  G     G  ++   GP G PG P R GP    GL   P P      PG    
Sbjct: 675 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 734

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
                +  + G  G  G P       +SG+
Sbjct: 735 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 764



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 5   AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
           AGF  +  SGG   S    A +A GP G PG P   G     GL  +     A   PG  
Sbjct: 789 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 845

Query: 64  -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            LPG      PQGP    G  G  G+P  + G+ Q G+      P P
Sbjct: 846 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 891



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     GP G PG P  +GP   +G      PG     P   PG    PQG
Sbjct: 585 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 632

Query: 74  PSMGPPG 80
           P  GPPG
Sbjct: 633 PP-GPPG 638



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)

Query: 11   APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
            +P GGA      GA    G  G PGP  R G       Y+  +     P RPGM  L G 
Sbjct: 950  SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 1002

Query: 68   RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
            +  P   S+        GPPG  G P   PG  +  S +     RP P
Sbjct: 1003 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 1049



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
            P G  G  G  G   A G  G PGPP +                            G   
Sbjct: 1049 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1108

Query: 45   GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
            G G + S +PG    P P   PG    P+G S+    GPPG    P   PG+   G    
Sbjct: 1109 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 1163

Query: 100  RKRPAP 105
               P P
Sbjct: 1164 PGPPGP 1169



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)

Query: 12  PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
           P G  G+ G        G G     GP G PGP V +          P P      +  P
Sbjct: 859 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 918

Query: 55  GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
           G A P+           PG       PGS  +P G ++GP        PG+ G P    R
Sbjct: 919 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 978

Query: 89  PG 90
           PG
Sbjct: 979 PG 980



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 6    GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
            G+  +    G    G  G     GP G         PGPP   GP    G +R  +   +
Sbjct: 1128 GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1184

Query: 58   YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
             P P   PG    P GP  GPPG  G +  VR     Q+ + Q  + P    I   +Q+ 
Sbjct: 1185 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1236

Query: 116  VQNRNHNAKKKKMADKILP 134
            +  R  N  +K   +   P
Sbjct: 1237 LYVRVQNGFRKVQLEARTP 1255


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/100 (38%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 8   QSVAPSG-GAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
           Q + P G G  A+  A A A++    T  PP R GP P  G   +P PG   P PGM P 
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GAPPPGMMGPPPGMRP- 197

Query: 67  SRMTPQGPSMG-PPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               P GP MG PPG G            GM     RP P
Sbjct: 198 ----PMGPPMGIPPGRG---------TPMGMPPPGMRPPP 224



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPG--GTPGPPVRMGPAPGQGLYRSPMPGAAYPR--P 61
           G  +VA +  A  +  AGA     PG  G P P  R  P PG      P PG   P   P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM---MGPPPGMRPPMGPP 202

Query: 62  GMLPGSRMTPQG---PSMGPPGYGGNPSVRPGL 91
             +P  R TP G   P M PP  G      PG+
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGM 235



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 27/88 (30%)

Query: 16  AGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-- 73
           AGA+GG G   A G G   G P+   PA   G    P+ G   P   +     MTPQG  
Sbjct: 98  AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG----PVRGVGGPSQQV-----MTPQGRG 148

Query: 74  ----------------PSMGPPGYGGNP 85
                           P+  PPG GG P
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPP 176


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/100 (38%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 8   QSVAPSG-GAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
           Q + P G G  A+  A A A++    T  PP R GP P  G   +P PG   P PGM P 
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GAPPPGMMGPPPGMRP- 197

Query: 67  SRMTPQGPSMG-PPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
               P GP MG PPG G            GM     RP P
Sbjct: 198 ----PMGPPMGIPPGRG---------TPMGMPPPGMRPPP 224



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 27/88 (30%)

Query: 16  AGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-- 73
           AGA+GG G   A G G   G P+   PA   G    P+ G   P   +     MTPQG  
Sbjct: 98  AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG----PVRGVGGPSQQV-----MTPQGRG 148

Query: 74  ----------------PSMGPPGYGGNP 85
                           P+  PPG GG P
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPP 176


>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
           [Homo sapiens]
          Length = 852

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 28/210 (13%)

Query: 2   AARAGFQSVAPSGGAGASGGA--GAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAY 58
           AA A   +     G G +GG+  G+  A  P G  G P  +GP A G+   R   P  A 
Sbjct: 11  AAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSG-PAEVGPGAVGERTPRKKEPPRAS 69

Query: 59  PRPGML--PGSRMTPQGPSMGPPGYGGNPSVRPGLAQS--GMDQSRKRPAPQQIQQVQQQ 114
           P  G+   PGS     GP++ P   G    +  G+A++  G   SR++ A  + +++ + 
Sbjct: 70  PPGGLAEPPGSAGPQAGPTVVP---GSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126

Query: 115 ----------AVQNRNHNAKKKKM----ADKILPQRIRELVPESQAYMDLLAFERKL--D 158
                     + + RN  A+K+K       +  P+   E  PE  + ++  AF+ +L  D
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHD 186

Query: 159 QTIMRKRLDIQEALKRPIKQKRKLRIFISN 188
           +   ++     + +  P +Q +K+ +FI N
Sbjct: 187 RMTSQEAACFPDIISGP-QQTQKVFLFIRN 215


>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
           sapiens]
          Length = 606

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 10  VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----- 64
           V P G  G  G  G+    GP G PGP   +GP   +G   SP P     +PG+      
Sbjct: 513 VGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGS 572

Query: 65  PGSR--MTPQGPS--MGPPGYGGNP 85
           PG R  M P+G     GPPG  G P
Sbjct: 573 PGQRGAMGPKGEPGIQGPPGLPGPP 597



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 34/95 (35%), Positives = 40/95 (42%), Gaps = 17/95 (17%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----------PG-QGLYRSPMPGAAYP 59
           P GG G  G  G+   LGP G  G P   GP            PG +G   S   G    
Sbjct: 476 PVGGRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRG 535

Query: 60  RPGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLA 92
           +PG  P   + P GP  GPPG  G   P  +PG+A
Sbjct: 536 QPG--PKGDIGPPGPE-GPPGSPGPSGPQGKPGIA 567



 Score = 36.2 bits (82), Expect = 0.067
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 3   ARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG 62
           ++  F +  P G  G  G  G     GP G+PGP    GP    G+  +   G+   R  
Sbjct: 524 SKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGP---SGPQGKPGI--AGKTGSPGQRGA 578

Query: 63  MLPGSRMTPQGPS--MGPPGYGGNPS 86
           M P      QGP    GPPG  G+ S
Sbjct: 579 MGPKGEPGIQGPPGLPGPPGPPGSQS 604



 Score = 32.7 bits (73), Expect = 0.74
 Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G  G  G    +G  G  G P  +GP   QG      PG A P      G R   
Sbjct: 461 PPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQG--PQGQPGEAGP-----VGER--- 510

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
                GP G  G P ++      G    R +P P+
Sbjct: 511 -----GPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 34/92 (36%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G AGA G AG     GP G PGP   +G    +G   S  P  A   PG     R+ P G
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG--AAGRVGPPG 887

Query: 74  PS--MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
           PS   GPPG  G      G    G      RP
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRP 919



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 39/103 (37%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 6    GFQSV-APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML 64
            GF  +  P G  G+ G  G + A GP G  GPP   G     GL  + +PG   P PG  
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL--NGLPGPIGP-PG-- 1166

Query: 65   PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQ 107
            P  R    GP +GPPG  G P   PG   +G D S     PQ+
Sbjct: 1167 PRGRTGDAGP-VGPPGPPGPPG-PPGPPSAGFDFSFLPQPPQE 1207



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 42/112 (37%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPP---VRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
           +V   G AG  G  G+    G  G PGPP      GPA   G    P    A   PG+  
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407

Query: 64  ---LPGSR--MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRK-RPAPQQIQ 109
               PG+R    PQGP  GPPG  GN S  PG   S  D   K  P P  +Q
Sbjct: 408 APGFPGARGPSGPQGPG-GPPGPKGN-SGEPGAPGSKGDTGAKGEPGPVGVQ 457



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 38/103 (36%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 2    AARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRP 61
            A R G   V P G  G +G  G+  A GP G PG P   G A  +G+   P        P
Sbjct: 916  AGRPG--EVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973

Query: 62   GMLPGSRMTP--QGPS-----MGPPGYGGNPSVRPGLAQSGMD 97
            G LPG    P  QGPS      GPPG  G P +     +SG +
Sbjct: 974  G-LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGRE 1015



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSR-- 68
            PSG  G  G +GA+   GP G  GPP   GP PG+   R   PGA   P     PG++  
Sbjct: 978  PSGEPGKQGPSGASGERGPPGPMGPPGLAGP-PGES-GREGAPGAEGSPGRDGSPGAKGD 1035

Query: 69   MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
                GP+ GPPG  G P     +  +G    R    P
Sbjct: 1036 RGETGPA-GPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 36/106 (33%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 3   ARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG 62
           A+    S  P G  G  G AG     GP G  GPP   GPA  +        G   PR  
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE--------GGKGPRGE 912

Query: 63  MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQI 108
             P  R    GP  GPPG  G     PG    G   +   P PQ I
Sbjct: 913 TGPAGRPGEVGPP-GPPGPAGEKG-SPG--ADGPAGAPGTPGPQGI 954



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 38/104 (36%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 12  PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAA--YPRPGMLPG 66
           P G AG  GG G     GP G P   GPP   GPA  +G   +  P  A   P P  + G
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAG 956

Query: 67  SR----MTPQGPSMGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
            R    +  Q    G PG  G PS  PG    SG    R  P P
Sbjct: 957 QRGVVGLPGQRGERGFPGLPG-PSGEPGKQGPSGASGERGPPGP 999



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQGLYRSPMPGAAYPR-------PGML 64
           G  G  G AG     G  G PGPP  +GPA   G+   + P PG A P        P   
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP-PGPAGPAGERGEQGPAGS 639

Query: 65  PGSRMTPQGPSMGPPGYGGNP 85
           PG +  P GP+ GPPG  G P
Sbjct: 640 PGFQGLP-GPA-GPPGEAGKP 658



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G AG  G  GA    GP G PGPP   G    +G       G A P+          P
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF--PGADGVAGPKGPAGERGSPGP 516

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
            GP  G PG  G P         G+  S   P P
Sbjct: 517 AGPK-GSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
           GFQ     G  G  G  GA+  +GP G PGPP + G     G            +PG  P
Sbjct: 200 GFQ-----GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG------------KPGR-P 241

Query: 66  GSRMTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           G R  P GP  + G PG  G P ++     SG+D ++    P
Sbjct: 242 GER-GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 282



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 9   SVAPSGGAGASGGAGAAAALG-PG--GTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
           +  P+G  GA G  GA  A G PG  G PG P   GP+  QG    P P      PG  P
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG-AP 439

Query: 66  GSR-----MTPQGP--SMGPPGYGGNPSVRPGLAQSG 95
           GS+         GP    GPPG  G    R    + G
Sbjct: 440 GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPP------VRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
           P+G  G  G  GAA   GP G  GPP         G A  QG   S  P      PG  P
Sbjct: 318 PAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG--P 375

Query: 66  GSRMTPQGPSMGPPGYGGNPSVR-----PGLAQS-GMDQSRKRPAPQ 106
                  GP+ G PG  G P  +     PG+A + G   +R    PQ
Sbjct: 376 PGPAGAAGPA-GNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ 421



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     G  G PGPP   G     G+   P P  A   PG   G R  P  
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK-AGERGVPGP 603

Query: 74  P-SMGPPGYGGNPSVR--PGLAQSGMDQSRKRPA 104
           P ++GP G  G    +  PG A    ++  + PA
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 33/99 (33%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
           P G  G+ G  G     GP G PGP      APG      P   A        PG R  P
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGP----AGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805

Query: 72  QGPS----MGPPGYGGNPSVR--PGLAQSGMDQSRKRPA 104
             P      GPPG  G P  +  PG A +  D     PA
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844



 Score = 39.3 bits (90), Expect = 0.008
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 13  SGGAGASGGAGAAAALGPGGTP---GPPVRMGP--APGQ-GLYRSPMPGAAYPRPGMLPG 66
           SG  GA G AG A   G  G+P   G P +MGP   PG+ G   +P P  A    G    
Sbjct: 271 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGA 330

Query: 67  SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQ 109
           +   P GP+ GP G  G P       ++G    R    PQ ++
Sbjct: 331 A--GPPGPT-GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR 370



 Score = 38.5 bits (88), Expect = 0.013
 Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMT 70
           PSG AG +G  GA    G  G PGP    GP    G   +   PG A  +    P     
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845

Query: 71  PQGPSMGPPGYGGNPSVRPGLAQSG 95
           P GP  GP G  G P  +     +G
Sbjct: 846 PAGPP-GPIGNVGAPGAKGARGSAG 869



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 31/79 (39%), Positives = 32/79 (40%), Gaps = 18/79 (22%)

Query: 6   GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
           G +S       G  G  G     GP G  GPP R G  PGQ       PG   P PG   
Sbjct: 98  GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDG-IPGQ-------PGLPGP-PG--- 145

Query: 66  GSRMTPQGPSMGPPGYGGN 84
                P GP  GPPG GGN
Sbjct: 146 -----PPGPP-GPPGLGGN 158



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--APGQGLYRSPMPGAAYPRPGMLPGSRM 69
           P G  G +G  G     G  G PGPP   GP   PG G   +P     Y        S  
Sbjct: 119 PRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVP 178

Query: 70  TPQGPSMGPPGYGGNPSVRPG 90
            P GPS GP G  G P   PG
Sbjct: 179 GPMGPS-GPRGLPGPPGA-PG 197



 Score = 37.0 bits (84), Expect = 0.039
 Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  GA G AGA    G  G  GPP   GPA   G      PGA   +          PQG
Sbjct: 311 GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG-----FPGAVGAK------GEAGPQG 359

Query: 74  P--SMGPPGYGGNP 85
           P  S GP G  G P
Sbjct: 360 PRGSEGPQGVRGEP 373



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 31/98 (31%), Positives = 32/98 (32%), Gaps = 27/98 (27%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQ------------------------G 47
            P G AG SG  G     GP G  GP    GPA  Q                        G
Sbjct: 1056 PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115

Query: 48   LYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
            L   P P  +    G  P     P GP  GPPG  G P
Sbjct: 1116 LQGPPGPPGSPGEQG--PSGASGPAGP-RGPPGSAGAP 1150



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 13  SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
           +GG    G  G +   G  G PG P   GP   QG    P  PGA+ P         M P
Sbjct: 172 TGGISVPGPMGPSGPRGLPGPPGAP---GPQGFQGPPGEPGEPGASGP---------MGP 219

Query: 72  QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
           +GP  GPPG  G+        + G    R  P PQ
Sbjct: 220 RGPP-GPPGKNGDDG---EAGKPGRPGERGPPGPQ 250



 Score = 34.7 bits (78), Expect = 0.19
 Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG-QGLYRSPMPGAAYPRPGMLPGSRMT 70
           P+G  GA+G  G   A G  G PG P   G APG QG     MPG        LPG    
Sbjct: 693 PAGPRGANGAPGNDGAKGDAGAPGAPGSQG-APGLQG-----MPGER--GAAGLPG---- 740

Query: 71  PQGP--SMGPPGYGGNP 85
           P+G     GP G  G+P
Sbjct: 741 PKGDRGDAGPKGADGSP 757



 Score = 34.3 bits (77), Expect = 0.25
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR--MTP 71
           G  G +G  G     GP G PG   + G     G   +P P  A    G  PG R    P
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGERGVQGP 690

Query: 72  QGPSMGPPGYGGNP 85
            GP+ GP G  G P
Sbjct: 691 PGPA-GPRGANGAP 703



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 12  PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
           P+G  G+ G AG   + G  G PG     G     G   SP P      PG      R  
Sbjct: 507 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG 566

Query: 71  PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           P GP  + G  G  G P  +    + G    R  P P
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603



 Score = 33.9 bits (76), Expect = 0.33
 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 9   SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
           +V P+G  G +G  G     GP G  G     GPA   G    P P A  P     PG +
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERG---EQGPAGSPGFQGLPGP-AGPPGEAGKPGEQ 661

Query: 69  MTPQGPSMGPPGYGG 83
             P    +G PG  G
Sbjct: 662 GVP--GDLGAPGPSG 674



 Score = 33.5 bits (75), Expect = 0.43
 Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 2   AARAGFQSVAPSGGA-GASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
           A + G Q V    GA G SG  G     G  G  GPP   GPA  +G   +P    A   
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP---GPAGPRGANGAPGNDGA--- 708

Query: 61  PGMLPGSRMTPQGP-SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
                G    P  P S G PG  G P  R      G    R    P+
Sbjct: 709 ----KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 751



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 28/93 (30%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 14  GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
           G  G  G  G     GP G PG      P    G       G + P P    G R  P  
Sbjct: 133 GIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGP 192

Query: 74  P-SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
           P + GP G+ G P        SG    R  P P
Sbjct: 193 PGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP 225



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 30/80 (37%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 12  PSGGAGASGGAGAAAALGP---GGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGML 64
           P G  G  G AG     G     G  G     GPA  +G   SP     PG   PR   L
Sbjct: 249 PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG--L 306

Query: 65  PGSRMTPQGPSMGPPGYGGN 84
           PG R  P  P  GP G  GN
Sbjct: 307 PGERGRPGAP--GPAGARGN 324



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 20/94 (21%)

Query: 14  GGAGASGGAGAAAALG----PG-----GTPGPPVRMGPA--------PGQGLYRSPMPGA 56
           G AGA G  G+  A G    PG     G PGP    G A        PG+   R      
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPI 769

Query: 57  AYPRPGMLPGSR--MTPQGPSMGPPGYGGNPSVR 88
             P P   PG +    P GP+ GP G  G P  R
Sbjct: 770 GPPGPAGAPGDKGESGPSGPA-GPTGARGAPGDR 802



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 13/87 (14%)

Query: 12   PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
            P+G  GA G  GA   +GP G  G     GPA           G A P   +       P
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA-----------GPAGPVGPVGARGPAGP 1089

Query: 72   QGP--SMGPPGYGGNPSVRPGLAQSGM 96
            QGP    G  G  G+  ++     SG+
Sbjct: 1090 QGPRGDKGETGEQGDRGIKGHRGFSGL 1116



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 9    SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
            S    G  G +G AG   A G  G PGP   +GPA   G       G A P   + P   
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGAPGP---VGPAGKSG--DRGETGPAGPAGPVGPVGA 1083

Query: 69   MTPQGPSMGPPGYGG 83
              P GP  GP G  G
Sbjct: 1084 RGPAGP-QGPRGDKG 1097


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 33  TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
           TP PP+    R GP+PG G    P PGA   P PG  PGS  +  GPS GPP  G   P+
Sbjct: 3   TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 87  VRP-GLAQSGMDQSRK 101
             P G  Q  M Q  K
Sbjct: 59  QGPGGYPQDNMHQMHK 74



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 24  AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
           + +A GPG  PGP    GP PG G    P P   Y RP  + G  M P GPS  PPG  G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274

Query: 84  NPSVRP 89
            P   P
Sbjct: 275 QPPGGP 280



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
          PG  P P   +GP+PG      P PG+A+   G  PG        P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 35  GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
           G  +R G   G G   SPM   +   P  L GS      +   GPS GP    G GG P 
Sbjct: 95  GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153

Query: 87  VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
              G     + Q  + P P           QN+ H  + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 33  TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
           TP PP+    R GP+PG G    P PGA   P PG  PGS  +  GPS GPP  G   P+
Sbjct: 3   TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 87  VRP-GLAQSGMDQSRK 101
             P G  Q  M Q  K
Sbjct: 59  QGPGGYPQDNMHQMHK 74



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 24  AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
           + +A GPG  PGP    GP PG G    P P   Y RP  + G  M P GPS  PPG  G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274

Query: 84  NPSVRP 89
            P   P
Sbjct: 275 QPPGGP 280



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
          PG  P P   +GP+PG      P PG+A+   G  PG        P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 35  GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
           G  +R G   G G   SPM   +   P  L GS      +   GPS GP    G GG P 
Sbjct: 95  GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153

Query: 87  VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
              G     + Q  + P P           QN+ H  + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 33  TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
           TP PP+    R GP+PG G    P PGA   P PG  PGS  +  GPS GPP  G   P+
Sbjct: 3   TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58

Query: 87  VRP-GLAQSGMDQSRK 101
             P G  Q  M Q  K
Sbjct: 59  QGPGGYPQDNMHQMHK 74



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 24  AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
           + +A GPG  PGP    GP PG G    P P   Y RP  + G  M P GPS  PPG  G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274

Query: 84  NPSVRP 89
            P   P
Sbjct: 275 QPPGGP 280



 Score = 35.8 bits (81), Expect = 0.087
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
          PG  P P   +GP+PG      P PG+A+   G  PG        P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 35  GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
           G  +R G   G G   SPM   +   P  L GS      +   GPS GP    G GG P 
Sbjct: 95  GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153

Query: 87  VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
              G     + Q  + P P           QN+ H  + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,309,840
Number of Sequences: 37866
Number of extensions: 1266608
Number of successful extensions: 20828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 8689
Number of HSP's gapped (non-prelim): 6501
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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