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Search of human proteins with 133908629
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
(515 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 1042 0.0
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 938 0.0
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 701 0.0
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 701 0.0
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 699 0.0
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 650 0.0
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 646 0.0
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 3e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 3e-07
gi|50428940 mediator complex subunit 25 [Homo sapiens] 53 6e-07
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 50 5e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 50 5e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 49 8e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 49 1e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 49 1e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 49 1e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 49 1e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 49 1e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 49 1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 49 1e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 49 1e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 49 1e-05
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 49 1e-05
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 49 1e-05
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 49 1e-05
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 48 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 2e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 48 2e-05
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 1042 bits (2694), Expect = 0.0
Identities = 515/515 (100%), Positives = 515/515 (100%)
Query: 1 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
Sbjct: 1 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
Sbjct: 61 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
Query: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
Sbjct: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
Query: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
Sbjct: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
Query: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
Sbjct: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
Query: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
Sbjct: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
Query: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
Sbjct: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
Query: 421 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE 480
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
Sbjct: 421 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE 480
Query: 481 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
Sbjct: 481 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 938 bits (2424), Expect = 0.0
Identities = 474/515 (92%), Positives = 474/515 (92%), Gaps = 41/515 (7%)
Query: 1 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
Sbjct: 1 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
Sbjct: 61 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN 120
Query: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
Sbjct: 121 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR 180
Query: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
Sbjct: 181 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL 240
Query: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
Sbjct: 241 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR 300
Query: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
Sbjct: 301 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR 360
Query: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
Sbjct: 361 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL 420
Query: 421 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE 480
DN KTMTDVVGNPEEERRAE
Sbjct: 421 DN-----------------------------------------KTMTDVVGNPEEERRAE 439
Query: 481 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
Sbjct: 440 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 701 bits (1809), Expect = 0.0
Identities = 351/475 (73%), Positives = 408/475 (85%), Gaps = 20/475 (4%)
Query: 54 PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
PG +P RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP
Sbjct: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
Query: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
Q Q Q Q V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 63 PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122
Query: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182
Query: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235
Query: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ D
Sbjct: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295
Query: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
KY QQIF+ R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355
Query: 401 KTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQC 460
K QM+SFLLSTA+QQEI+ LD+KIHETIE+INQLK QR+FMLSF+RDP+G++ D L+SQ
Sbjct: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415
Query: 461 RDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
RDLK MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 701 bits (1809), Expect = 0.0
Identities = 351/475 (73%), Positives = 408/475 (85%), Gaps = 20/475 (4%)
Query: 54 PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
PG +P RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP
Sbjct: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
Query: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
Q Q Q Q V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 63 PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122
Query: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182
Query: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235
Query: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ D
Sbjct: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295
Query: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
KY QQIF+ R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355
Query: 401 KTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQC 460
K QM+SFLLSTA+QQEI+ LD+KIHETIE+INQLK QR+FMLSF+RDP+G++ D L+SQ
Sbjct: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415
Query: 461 RDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
RDLK MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 699 bits (1805), Expect = 0.0
Identities = 348/464 (75%), Positives = 404/464 (87%), Gaps = 15/464 (3%)
Query: 60 RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP---QQIQQVQQQ 114
RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP Q Q Q Q
Sbjct: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
Query: 115 AVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEA 171
V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR+DIQEA
Sbjct: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
Query: 172 LKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKR 231
LKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D + KQKR
Sbjct: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS-------KQKR 199
Query: 232 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQ 291
KFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++VRCT+LLMLDYQ
Sbjct: 200 KFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQ 259
Query: 292 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR 351
PPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ DKY QQIF+ R
Sbjct: 260 PPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPR 319
Query: 352 MKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLST 411
+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ LK QM+SFLLST
Sbjct: 320 LKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLST 379
Query: 412 ASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVG 471
A+QQEI+ LD+KIHETIE+INQLK QR+FMLSF+RDP+G++ D L+SQ RDLK MTDV G
Sbjct: 380 ANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAG 439
Query: 472 NPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
NPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 440 NPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 650 bits (1676), Expect = 0.0
Identities = 341/531 (64%), Positives = 404/531 (76%), Gaps = 38/531 (7%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVR-MGPA-----PGQGLYRSPM----PGAAYP 59
++P GGA A+ GPG PGP +R GPA PG +R PM P A Y
Sbjct: 14 LSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR-PMGPAGPAAQYQ 72
Query: 60 RPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAV 116
RPGM PG+RM G +GPP +G +RPG+ + MD RKR Q Q +
Sbjct: 73 RPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQP----PM 128
Query: 117 QNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI 176
+ K++KMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+
Sbjct: 129 PAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPL 188
Query: 177 KQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRVEGRLLEDSALSKY 224
QKRKLRI+ISNTF+P+K++ D GT VASWELRVEG+LL+D +
Sbjct: 189 TQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLDDPS---- 243
Query: 225 DATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTV 284
KQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR TTQETDGFQVKRPGD+NV+CT+
Sbjct: 244 ---KQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL 300
Query: 285 LLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQ 344
LLMLD+QPPQ+KLDPRLARLLG+HTQTR I+QALW YIK ++LQD HERE++ C++Y +
Sbjct: 301 LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR 360
Query: 345 QIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQM 404
QIF R++FSEIP +L LL P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM
Sbjct: 361 QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM 420
Query: 405 NSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLK 464
++FL ST +QQEIA+LD KIHETIE+INQLKTQR+FMLSF+ DPQ FI +WL+SQ RDLK
Sbjct: 421 SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLK 480
Query: 465 TMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
+TDV+GNPEEERRA FY QPWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 481 IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 646 bits (1666), Expect = 0.0
Identities = 335/521 (64%), Positives = 397/521 (76%), Gaps = 39/521 (7%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
++P GGA A+ GPG PGP +R GP P Q Y RPGM PG+RM
Sbjct: 14 LSPGGGAVAAALGAPPPPAGPGMLPGPALR-GPGPAQ-----------YQRPGMSPGNRM 61
Query: 70 TPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKK 126
G +GPP +G +RPG+ + MD RKR Q Q + + K++
Sbjct: 62 PMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQ----AQPPMPAQRRGLKRR 117
Query: 127 KMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFI 186
KMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RKR++IQEA+K+P+ QKRKLRI+I
Sbjct: 118 KMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYI 177
Query: 187 SNTFNPAKSDAEDGEGT------------VASWELRVEGRLLEDSALSKYDATKQKRKFS 234
SNTF+P+K++ D GT VASWELRVEG+LL+ D +KQKRKFS
Sbjct: 178 SNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVEGKLLD-------DPSKQKRKFS 229
Query: 235 SFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQ 294
SFFKSLVIELDK+LYGPDNHLVEWHR TTQETDGFQVKRPGD+NV+CT+LLMLD+QPPQ
Sbjct: 230 SFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQ 289
Query: 295 FKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKF 354
+KLDPRLARLLG+HTQTR I+QALW YIK ++LQD HERE++ C++Y +QIF R++F
Sbjct: 290 YKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRF 349
Query: 355 SEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQ 414
SEIP +L LL P+PI+INHVISVDPNDQKKTACYDIDVEVDD LK QM++FL ST +Q
Sbjct: 350 SEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQ 409
Query: 415 QEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPE 474
QEIA+LD KIHETIE+INQLKTQR+FMLSF+ DPQ FI +WL+SQ RDLK +TDV+GNPE
Sbjct: 410 QEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPE 469
Query: 475 EERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
EERRA FY QPWAQEAV R+ ++KVQQRRQELEQ LGIR T
Sbjct: 470 EERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 510
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 54.3 bits (129), Expect = 3e-07
Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT-PQ 72
G G SG GA+ GP G GPP +GP+ G + +PG P PG S T P
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG--ANGIPGPIGP-PGPRGRSGETGPA 1199
Query: 73 GP--SMGPPGYGGNPSVRPGL---AQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAK 124
GP + GPPG G P PG+ A +G+ K P P Q + Q A R H+A+
Sbjct: 1200 GPPGNPGPPGPPGPPG--PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAE 1254
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
V P+GG G G GA GP G GP GP G SP P A PG +PG+
Sbjct: 359 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 418
Query: 68 RMTPQGPSM-GPPGYGGNPSVRPG 90
+ + P + G PG+ G P PG
Sbjct: 419 KGSAGAPGIAGAPGFPG-PRGPPG 441
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRM 69
G G +G AGAA A G G PGP P +GPA G G +P G A P P
Sbjct: 330 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 389
Query: 70 TPQGP-----SMGPPGYGGNPSV-----------RPGLAQS-GMDQSRKRPAPQ 106
P+G S GP G GNP PG+A + G R P PQ
Sbjct: 390 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 443
Score = 43.5 bits (101), Expect = 5e-04
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
G AG G AGA GP G PGP G +G + P A PG PGS
Sbjct: 852 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN 911
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
P P GPPG G + SG
Sbjct: 912 GNPGPP--GPPGPSGKDGPKGARGDSG 936
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------------MPGAAYPR 60
G AGA G AGA GP G PGP GP +G P PG A P+
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Query: 61 PGMLP-------GSRMTPQGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G+R P G +GPPG G P R Q G+ + P
Sbjct: 480 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 530
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR- 68
V G GA G G GP G PGP G +G P P + G PG R
Sbjct: 770 VGEKGPEGAPGKDGGRGLTGPIGPPGP---AGANGEKGEVGPPGPAGSAGARG-APGERG 825
Query: 69 -MTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P GP+ GPPG G P + ++G P PQ
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 866
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G AG G G PGPP GP+ G P A G PG P
Sbjct: 892 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGARGDSGP-PGRAGEP 944
Query: 72 --QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
QGP+ GPPG G P G + P PQ
Sbjct: 945 GLQGPA-GPPGEKGEP------GDDGPSGAEGPPGPQ 974
Score = 40.4 bits (93), Expect = 0.004
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP--RPGMLPGSRM 69
PSG G G GA+ GP G GPP GPA G R PGA P R G
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG--REGSPGADGPPGRDGAAGVKGD 1057
Query: 70 TPQGPSMGPPGYGGNPSVRPGLA 92
+ ++G PG G P PG A
Sbjct: 1058 RGETGAVGAPGAPGPPG-SPGPA 1079
Score = 40.0 bits (92), Expect = 0.005
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--------LP 65
G AG G G + A G G PGPP G G+ P P A PG P
Sbjct: 567 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626
Query: 66 GSRMTP----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
G R P + + GPPG G R G + P P
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRS-PMPGAAYPR-PGMLPGSR--M 69
G AG G G A+G G PGPP GPA G GA P P G+R
Sbjct: 1050 GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1109
Query: 70 TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PQGP G G G P R G + P P
Sbjct: 1110 GPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144
Score = 39.7 bits (91), Expect = 0.007
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY-RSPMPGAAYPRPGMLPGSRMTPQ 72
G +G+ G G+ +GP G PG R GPA G PG A P PG P
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG--------PV 359
Query: 73 GPSMGPPGYGGNPSVRPGLAQSG 95
GP+ G PG+ G P + +G
Sbjct: 360 GPA-GGPGFPGAPGAKGEAGPTG 381
Score = 39.7 bits (91), Expect = 0.007
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRP 61
V P G AG++G GA G G PGP GP A G+ A P P
Sbjct: 806 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 865
Query: 62 GMLPGSRMTPQGP-----------SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P PQGP + GPPG G P + G + + P P
Sbjct: 866 -QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919
Score = 38.9 bits (89), Expect = 0.011
Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----PGMLPGS 67
P G G G +G A G G PG P G +GL + PG A P+ P PG
Sbjct: 526 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGAPGE 583
Query: 68 RMTPQGPSMGPPGYGGNPSV 87
P P GP G G P V
Sbjct: 584 DGRPGPP--GPQGARGQPGV 601
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQGL-YRSPMPGAAYPRP 61
+ P G AG +G G A GP G PGPP G QG+ + PG PR
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Query: 62 GM-LPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSG 95
PG R +P + GP G G P SG
Sbjct: 700 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 735
Score = 38.5 bits (88), Expect = 0.015
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-------MLPG 66
G G G G G G PGPP GP G + + M G + G P
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 203
Query: 67 SRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
M P+GP + GP G+ GNP SG R P P
Sbjct: 204 GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 247
Score = 38.5 bits (88), Expect = 0.015
Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP-----APGQGLYRSPMPG----A 56
GFQ G G G G + +GP G PGPP + G PG+ R P PG
Sbjct: 222 GFQ-----GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGAR 275
Query: 57 AYPRPGMLPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+P LPG + P + G G G P V+ +SG P P
Sbjct: 276 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK---GESGSPGENGSPGP 322
Score = 38.5 bits (88), Expect = 0.015
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG--MLPGSRMTP 71
G G +G AG GP G G GP+ QGL P P +PG +PG P
Sbjct: 633 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 692
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+GP G G P R G+ R P
Sbjct: 693 --GLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Score = 38.1 bits (87), Expect = 0.019
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
+GGA G +GP G PGP GP QG +P PG PG+ P
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGP---QGFQGNPGEPG----EPGV-----SGP 238
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP GPPG G P + G R P PQ
Sbjct: 239 MGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Score = 37.7 bits (86), Expect = 0.025
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLPG 66
G AG G G GP G GPP G A +G+ P PG P P PG
Sbjct: 948 GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG--LPGPSGEPG 1005
Query: 67 SRMTP-QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ P GPPG G P + + G + S P
Sbjct: 1006 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Score = 36.2 bits (82), Expect = 0.074
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G AGA G G G G PG MGP G P +PG P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPG--KAGERGP 268
Query: 72 QGP--SMGPPGYGGNPSVRPGLAQSGMDQSR 100
GP + G PG G P V+ G+D ++
Sbjct: 269 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/73 (41%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G AG G G G G PGP R G PG PG P PG P
Sbjct: 124 PQGPAGEQGPRGDRGDKGEKGAPGPRGRDG-EPG-------TPGNPGP-PG--------P 166
Query: 72 QGPSMGPPGYGGN 84
GP GPPG GGN
Sbjct: 167 PGPP-GPPGLGGN 178
Score = 35.0 bits (79), Expect = 0.16
Identities = 38/111 (34%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S P+G G G G A A GP G GP G QG R A P L G R
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHR 1133
Query: 69 --------MTPQGPS-----MGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
P GPS GP G G P PG + SG D + P P
Sbjct: 1134 GFTGLQGLPGPPGPSGDQGASGPAGPSG-PRGPPGPVGPSGKDGANGIPGP 1183
Score = 34.7 bits (78), Expect = 0.21
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-------PG 66
G G G G+A A G G PG P GP QG P PG+ P
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 470
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
P GP G PG G R + G
Sbjct: 471 GEPGPAGP-QGAPGPAGEEGKRGARGEPG 498
Score = 34.3 bits (77), Expect = 0.28
Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 25/114 (21%)
Query: 12 PSGGAGASGGAGAAAALG----PG--------GTPGP---PVRMGPAPGQGLYRSPMPGA 56
PSG G G G A G PG G PGP P + G APG R P PG
Sbjct: 964 PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG-APGASGDRGP-PGP 1021
Query: 57 AYPRPGML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P PG+ PG +P GPPG G V+ ++G + P P
Sbjct: 1022 VGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGP 1072
Score = 33.9 bits (76), Expect = 0.37
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
G + P G GA G G G G G P GP+ GL RPG
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS---GLAGPKGANGDPGRPGEPG 555
Query: 64 LPGSR-MTPQGPSMGPPGYGGNPSVRPG 90
LPG+R +T + GP G G PS PG
Sbjct: 556 LPGARGLTGRPGDAGPQGKVG-PSGAPG 582
Score = 33.5 bits (75), Expect = 0.48
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPG 55
+ P G G SG G A G G PGPP GP PG G+ S G
Sbjct: 1184 IGPPGPRGRSGETGPAGPPGNPGPPGPP---GP-PGPGIDMSAFAG 1225
Score = 32.7 bits (73), Expect = 0.81
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 22/81 (27%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S P+G +G G G A G G PG + APG +P P PG
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPG----IAGAPG------------FPGPRGPPG-- 441
Query: 69 MTPQGPS--MGPPGYGGNPSV 87
PQG + +GP G G P +
Sbjct: 442 --PQGATGPLGPKGQTGEPGI 460
Score = 30.0 bits (66), Expect = 5.3
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 12 PSGGAGASGGA---GAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P+G G G G A + G G PG GP PG + P PGA +PG
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP-PGAD-GQPGAKGEQG 852
Query: 69 MTPQGPSMGPPGYGGNPSVRPG 90
Q G PG G PS PG
Sbjct: 853 EAGQKGDAGAPGPQG-PSGAPG 873
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 54.3 bits (129), Expect = 3e-07
Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT-PQ 72
G G SG GA+ GP G GPP +GP+ G + +PG P PG S T P
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG--ANGIPGPIGP-PGPRGRSGETGPA 1130
Query: 73 GP--SMGPPGYGGNPSVRPGL---AQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAK 124
GP + GPPG G P PG+ A +G+ K P P Q + Q A R H+A+
Sbjct: 1131 GPPGNPGPPGPPGPPG--PGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAE 1185
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
V P+GG G G GA GP G GP GP G SP P A PG +PG+
Sbjct: 290 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 349
Query: 68 RMTPQGPSM-GPPGYGGNPSVRPG 90
+ + P + G PG+ G P PG
Sbjct: 350 KGSAGAPGIAGAPGFPG-PRGPPG 372
Score = 47.4 bits (111), Expect = 3e-05
Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRM 69
G G +G AGAA A G G PGP P +GPA G G +P G A P P
Sbjct: 261 GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ 320
Query: 70 TPQGP-----SMGPPGYGGNPSV-----------RPGLAQS-GMDQSRKRPAPQ 106
P+G S GP G GNP PG+A + G R P PQ
Sbjct: 321 GPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ 374
Score = 43.5 bits (101), Expect = 5e-04
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
G AG G AGA GP G PGP G +G + P A PG PGS
Sbjct: 783 GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN 842
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
P P GPPG G + SG
Sbjct: 843 GNPGPP--GPPGPSGKDGPKGARGDSG 867
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------------MPGAAYPR 60
G AGA G AGA GP G PGP GP +G P PG A P+
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Query: 61 PGMLP-------GSRMTPQGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G+R P G +GPPG G P R Q G+ + P
Sbjct: 411 GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 461
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR- 68
V G GA G G GP G PGP G +G P P + G PG R
Sbjct: 701 VGEKGPEGAPGKDGGRGLTGPIGPPGP---AGANGEKGEVGPPGPAGSAGARG-APGERG 756
Query: 69 -MTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P GP+ GPPG G P + ++G P PQ
Sbjct: 757 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ 797
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G AG G G PGPP GP+ G P A G PG P
Sbjct: 823 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDG------PKGARGDSGP-PGRAGEP 875
Query: 72 --QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
QGP+ GPPG G P G + P PQ
Sbjct: 876 GLQGPA-GPPGEKGEP------GDDGPSGAEGPPGPQ 905
Score = 40.4 bits (93), Expect = 0.004
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP--RPGMLPGSRM 69
PSG G G GA+ GP G GPP GPA G R PGA P R G
Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG--REGSPGADGPPGRDGAAGVKGD 988
Query: 70 TPQGPSMGPPGYGGNPSVRPGLA 92
+ ++G PG G P PG A
Sbjct: 989 RGETGAVGAPGAPGPPG-SPGPA 1010
Score = 40.0 bits (92), Expect = 0.005
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--------LP 65
G AG G G + A G G PGPP G G+ P P A PG P
Sbjct: 498 GDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557
Query: 66 GSRMTP----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
G R P + + GPPG G R G + P P
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRS-PMPGAAYPR-PGMLPGSR--M 69
G AG G G A+G G PGPP GPA G GA P P G+R
Sbjct: 981 GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1040
Query: 70 TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PQGP G G G P R G + P P
Sbjct: 1041 GPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075
Score = 39.7 bits (91), Expect = 0.007
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY-RSPMPGAAYPRPGMLPGSRMTPQ 72
G +G+ G G+ +GP G PG R GPA G PG A P PG P
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG--------PV 290
Query: 73 GPSMGPPGYGGNPSVRPGLAQSG 95
GP+ G PG+ G P + +G
Sbjct: 291 GPA-GGPGFPGAPGAKGEAGPTG 312
Score = 39.7 bits (91), Expect = 0.007
Identities = 34/115 (29%), Positives = 41/115 (35%), Gaps = 20/115 (17%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRP 61
V P G AG++G GA G G PGP GP A G+ A P P
Sbjct: 737 VGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGP 796
Query: 62 GMLPGSRMTPQGP-----------SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P PQGP + GPPG G P + G + + P P
Sbjct: 797 -QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850
Score = 38.9 bits (89), Expect = 0.011
Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----PGMLPGS 67
P G G G +G A G G PG P G +GL + PG A P+ P PG
Sbjct: 457 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKVGPSGAPGE 514
Query: 68 RMTPQGPSMGPPGYGGNPSV 87
P P GP G G P V
Sbjct: 515 DGRPGPP--GPQGARGQPGV 532
Score = 38.9 bits (89), Expect = 0.011
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQGL-YRSPMPGAAYPRP 61
+ P G AG +G G A GP G PGPP G QG+ + PG PR
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Query: 62 GM-LPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSG 95
PG R +P + GP G G P SG
Sbjct: 631 ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 666
Score = 38.5 bits (88), Expect = 0.015
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-------MLPG 66
G G G G G G PGPP GP G + + M G + G P
Sbjct: 75 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 134
Query: 67 SRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
M P+GP + GP G+ GNP SG R P P
Sbjct: 135 GPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 178
Score = 38.5 bits (88), Expect = 0.015
Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP-----APGQGLYRSPMPG----A 56
GFQ G G G G + +GP G PGPP + G PG+ R P PG
Sbjct: 153 GFQ-----GNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGAR 206
Query: 57 AYPRPGMLPGSRMTPQGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+P LPG + P + G G G P V+ +SG P P
Sbjct: 207 GFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK---GESGSPGENGSPGP 253
Score = 38.5 bits (88), Expect = 0.015
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG--MLPGSRMTP 71
G G +G AG GP G G GP+ QGL P P +PG +PG P
Sbjct: 564 GKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP 623
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+GP G G P R G+ R P
Sbjct: 624 --GLVGPRGERGFPGERGSPGAQGLQGPRGLP 653
Score = 38.1 bits (87), Expect = 0.019
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
+GGA G +GP G PGP GP QG +P PG PG+ P
Sbjct: 122 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGP---QGFQGNPGEPG----EPGV-----SGP 169
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP GPPG G P + G R P PQ
Sbjct: 170 MGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Score = 37.7 bits (86), Expect = 0.025
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLPG 66
G AG G G GP G GPP G A +G+ P PG P P PG
Sbjct: 879 GPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG--LPGPSGEPG 936
Query: 67 SRMTP-QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ P GPPG G P + + G + S P
Sbjct: 937 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Score = 36.2 bits (82), Expect = 0.074
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G AGA G G G G PG MGP G P +PG P
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPG--KAGERGP 199
Query: 72 QGP--SMGPPGYGGNPSVRPGLAQSGMDQSR 100
GP + G PG G P V+ G+D ++
Sbjct: 200 PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 230
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/73 (41%), Positives = 30/73 (41%), Gaps = 18/73 (24%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G AG G G G G PGP R G PG PG P PG P
Sbjct: 55 PQGPAGEQGPRGDRGDKGEKGAPGPRGRDG-EPG-------TPGNPGP-PG--------P 97
Query: 72 QGPSMGPPGYGGN 84
GP GPPG GGN
Sbjct: 98 PGPP-GPPGLGGN 109
Score = 35.0 bits (79), Expect = 0.16
Identities = 38/111 (34%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S P+G G G G A A GP G GP G QG R A P L G R
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHR 1064
Query: 69 --------MTPQGPS-----MGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
P GPS GP G G P PG + SG D + P P
Sbjct: 1065 GFTGLQGLPGPPGPSGDQGASGPAGPSG-PRGPPGPVGPSGKDGANGIPGP 1114
Score = 34.7 bits (78), Expect = 0.21
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-------PG 66
G G G G+A A G G PG P GP QG P PG+ P
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 401
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
P GP G PG G R + G
Sbjct: 402 GEPGPAGP-QGAPGPAGEEGKRGARGEPG 429
Score = 34.3 bits (77), Expect = 0.28
Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 25/114 (21%)
Query: 12 PSGGAGASGGAGAAAALG----PG--------GTPGP---PVRMGPAPGQGLYRSPMPGA 56
PSG G G G A G PG G PGP P + G APG R P PG
Sbjct: 895 PSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG-APGASGDRGP-PGP 952
Query: 57 AYPRPGML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P PG+ PG +P GPPG G V+ ++G + P P
Sbjct: 953 VGP-PGLTGPAGEPGREGSPGAD--GPPGRDGAAGVKGDRGETGAVGAPGAPGP 1003
Score = 33.9 bits (76), Expect = 0.37
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
G + P G GA G G G G G P GP+ GL RPG
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS---GLAGPKGANGDPGRPGEPG 486
Query: 64 LPGSR-MTPQGPSMGPPGYGGNPSVRPG 90
LPG+R +T + GP G G PS PG
Sbjct: 487 LPGARGLTGRPGDAGPQGKVG-PSGAPG 513
Score = 33.5 bits (75), Expect = 0.48
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPG 55
+ P G G SG G A G G PGPP GP PG G+ S G
Sbjct: 1115 IGPPGPRGRSGETGPAGPPGNPGPPGPP---GP-PGPGIDMSAFAG 1156
Score = 32.7 bits (73), Expect = 0.81
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 22/81 (27%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S P+G +G G G A G G PG + APG +P P PG
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPG----IAGAPG------------FPGPRGPPG-- 372
Query: 69 MTPQGPS--MGPPGYGGNPSV 87
PQG + +GP G G P +
Sbjct: 373 --PQGATGPLGPKGQTGEPGI 391
Score = 30.0 bits (66), Expect = 5.3
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 12 PSGGAGASGGA---GAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P+G G G G A + G G PG GP PG + P PGA +PG
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGP-PGPAGFAGP-PGAD-GQPGAKGEQG 783
Query: 69 MTPQGPSMGPPGYGGNPSVRPG 90
Q G PG G PS PG
Sbjct: 784 EAGQKGDAGAPGPQG-PSGAPG 804
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 53.1 bits (126), Expect = 6e-07
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 8 QSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP------APGQGLYRSPMPGAAYPRP 61
Q AP G S GP G P PP P APG GL + PGA
Sbjct: 310 QQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAG 369
Query: 62 GMLPGSRMTPQGPSMGPPGYGGNPSV-RPGLAQSGMDQSRKRPAPQQI-------QQVQQ 113
+ PG P +G P GG SV LA SG+ + +++P P + + +
Sbjct: 370 TVAPGGVSGPSPAQLGAPALGGQQSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPC 429
Query: 114 QAVQNRNHNAKKKKMADKILPQRI 137
Q N N K ++ K++ Q I
Sbjct: 430 QVYVNHGENLKTEQWPQKLIMQLI 453
Score = 35.8 bits (81), Expect = 0.096
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 21/101 (20%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G GASG G P GT PP PGA PG G P
Sbjct: 592 PQGTVGASGATGQPQ---PQGTAQPP----------------PGAPQGPPGAASGP--PP 630
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
GP + P G NP +R L Q+ P + +Q
Sbjct: 631 PGPILRPQNPGANPQLRSLLLNPPPPQTGVPPPQASLHHLQ 671
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 50.1 bits (118), Expect = 5e-06
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 10 VAPSGGAGASG-GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
++ +GGAG G GAGA A GPG P P + PAP QG SP AA P +
Sbjct: 1 MSEAGGAGPGGCGAGAGAGAGPGALPPQPAALPPAPPQG---SPCAAAAGGSGACGPATA 57
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQV 111
+ G + GP GG S R + ++ Q R P ++++++
Sbjct: 58 VAAAGTAEGP---GGGGSARIAVKKA---QLRSAPRAKKLEKL 94
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 50.1 bits (118), Expect = 5e-06
Identities = 37/100 (37%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
GG G+ G G + G G PGPP GP G+ P P PG G R P G
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK-NGERGGPGG 601
Query: 74 PS-MGPPGYGG--NPSVRPGLAQSGMDQ-SRKRPAPQQIQ 109
P GPPG G P PG G D+ P PQ +Q
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQ 641
Score = 47.4 bits (111), Expect = 3e-05
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 10 VAPSGGAGASGGAGAAAALGPGG------TPGPPVRMGPAPGQG-LYRSPMPGAAYPRPG 62
V P+G G++G G GP G PGPP G G+G + + +PGA PG
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA----PG 408
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
++ G+R P GP G G P +R G + G + ++ P P+
Sbjct: 409 LM-GARGPP-----GPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP-- 71
G AGA G GA + G G PGPP G PG + + A P PG R P
Sbjct: 315 GAAGARGNDGARGSDGQPGPPGPPGTAG-FPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP 373
Query: 72 ------QGPSMGPPGYGGNPSVRPGLAQSGM 96
QGP GPPG G+P + + +G+
Sbjct: 374 QGHAGAQGPP-GPPGINGSPGGKGEMGPAGI 403
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/111 (32%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM---------- 63
GG GA+G GA GP G+ G P GP+ G P P PG
Sbjct: 867 GGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDA 926
Query: 64 -LPGSRMTP--QGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQ 109
PG + +P QGP + GP G G R GM R P PQ ++
Sbjct: 927 GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVK 977
Score = 44.3 bits (103), Expect = 3e-04
Identities = 35/95 (36%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-LPGSRMTP 71
+G GA+G GA GP G G P GPA +G PG A PR PG P
Sbjct: 476 NGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG-----APGPAGPRGAAGEPGRDGVP 530
Query: 72 QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
GP M G PG G P G RP P
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGP 565
Score = 43.5 bits (101), Expect = 5e-04
Identities = 35/91 (38%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 5 AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML 64
AGF AP G G GG G A G G GPP GP G G A P P +
Sbjct: 809 AGFPG-AP-GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG-------PAGPPGPQGV 859
Query: 65 PGSRMTPQGPSM----------GPPGYGGNP 85
G R +P GP GPPG GNP
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNP 890
Score = 43.1 bits (100), Expect = 6e-04
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 7 FQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMG--PAPGQGLYRSP--MPGAAYPRPG 62
+ S G G AG GP G PGPP G +PG Y+ P PG A P
Sbjct: 155 YDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGP 214
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPG 90
P + P GP+ G G G P RPG
Sbjct: 215 PGPPGAIGPSGPA-GKDGESGRPG-RPG 240
Score = 43.1 bits (100), Expect = 6e-04
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G GP G G P GP G P P PG PG +
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA-PGGKGDA 677
Query: 72 QGPS-MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P GPPG G P +R G G + + P
Sbjct: 678 GAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGP 712
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG-----MLPGS 67
+G G GG GAA GP G G P G +G SP P PG +PG
Sbjct: 698 AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG- 756
Query: 68 RMTPQGPS--MGPPGYGGNP 85
+ P+GP+ +GPPG G P
Sbjct: 757 KDGPRGPTGPIGPPGPAGQP 776
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/88 (36%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM 63
R G S P G G GG GA G G GP +GP G G A PG
Sbjct: 731 RGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG- 789
Query: 64 LPGSRMTP-QGPSMGPPGYGGNPSVRPG 90
+ G R +P + GPPG G P PG
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGA-PG 816
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-------MPGAAYPRPGMLP 65
+G G+ G G GP G PG P + G G+G +P PG A P G P
Sbjct: 791 AGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP 850
Query: 66 GSRMTPQG-----PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PQG S G PG G P R G + + P P
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP 895
Score = 40.4 bits (93), Expect = 0.004
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G GP G PGPP +GP+ G RPG PG R P
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAG------KDGESGRPGR-PGERGLPGP 247
Query: 74 PSM-GPPGYGGNPSVR 88
P + GP G G P ++
Sbjct: 248 PGIKGPAGIPGFPGMK 263
Score = 40.4 bits (93), Expect = 0.004
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G +G G +GP G PG P MG A G P P A PG+ G+
Sbjct: 382 PPGPPGINGSPGGKGEMGPAGIPGAPGLMG-ARGP-----PGPAGANGAPGLRGGAGEPG 435
Query: 72 QGPSMGPP------GYGGNPSVRPGLAQSGMDQSRKRP 103
+ + G P G G P V + G D S P
Sbjct: 436 KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEP 473
Score = 39.7 bits (91), Expect = 0.007
Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----PGQGLYRSPMPGAAYPR--- 60
++ PSG AG G +G G G PGPP GPA PG +R G +
Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRG-FDGRNGEKGET 278
Query: 61 --PGM-----LPGSRMTPQGPSMGP---PGYGGNPSVRPGLAQSGMDQSR 100
PG+ LPG P GP MGP PG G P + G D +R
Sbjct: 279 GAPGLKGENGLPGENGAP-GP-MGPRGAPGERGRPGLPGAAGARGNDGAR 326
Score = 39.3 bits (90), Expect = 0.009
Identities = 30/92 (32%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRPGMLPGSRMTP 71
GG G G G G G GPP GP +G P P P G PG P
Sbjct: 597 GGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP 656
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P GP G G P G +G R P
Sbjct: 657 GEP--GPKGDAGAPGAPGGKGDAGAPGERGPP 686
Score = 39.3 bits (90), Expect = 0.009
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMT--P 71
GG G G G+ A G G PGPP +GPA G P PG GSR P
Sbjct: 1029 GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP-AGSRGAPGP 1087
Query: 72 QGPS--------------MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
QGP G G+ GNP +G + P P
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGP 1135
Score = 38.1 bits (87), Expect = 0.019
Identities = 41/131 (31%), Positives = 43/131 (32%), Gaps = 40/131 (30%)
Query: 13 SGGAGASGGAGAAAALGPGGT---------------------------------PGPPVR 39
SG G SG AG A A GP G+ PG P
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 40 MGPAPGQGLYRSPMPGAAYPR----PGMLPGSRMTPQGPS-MGPPGYGGNPSVRPGLAQS 94
GPA QG S PG A PR P PG T P +GPPG GN R
Sbjct: 1121 PGPAGQQGAIGS--PGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178
Query: 95 GMDQSRKRPAP 105
G P P
Sbjct: 1179 GHPGQPGPPGP 1189
Score = 38.1 bits (87), Expect = 0.019
Identities = 29/77 (37%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S P+G GA G G A GP G GPP + G + G P P G GS
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGS-EGSP 1178
Query: 69 MTPQGPSMGPPGYGGNP 85
P P GPPG G P
Sbjct: 1179 GHPGQP--GPPGPPGAP 1193
Score = 37.4 bits (85), Expect = 0.033
Identities = 35/97 (36%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 14 GGAGAS---GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSR 68
G AGA G G A A G G GPP GP G+G P P A PG+ +PG R
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPP---GPEGGKGAAGPPGPPGAAGTPGLQGMPGER 731
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P GP G G P G D R P
Sbjct: 732 GGLGSP--GPKGDKGEPGGPGADGVPGKDGPRGPTGP 766
Score = 37.0 bits (84), Expect = 0.043
Identities = 40/112 (35%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 6 GFQSVA-PSGGAGASGGAGAAAA---LGPGGTPGPPVRMGPAPGQGLYRSP-MPG--AAY 58
GF+ A P+G G G AG A GP G G P R G G G+ P PG +
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD 548
Query: 59 PRPGMLPGS-----RMTPQGPS--MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+PG PGS R P GPS G PG G P + G + R P
Sbjct: 549 GKPGP-PGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Score = 37.0 bits (84), Expect = 0.043
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
PSG G G G A G G+PG G A G SP PG L + +T
Sbjct: 895 PSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITG 954
Query: 72 QGPSMGPPGYGG-----------NPSVRPGLAQSGMDQSRKRPAPQ 106
GPPG G S +PG +G+ R P PQ
Sbjct: 955 ARGLAGPPGMPGPRGSPGPQGVKGESGKPG--ANGLSGERGPPGPQ 998
Score = 35.8 bits (81), Expect = 0.096
Identities = 34/88 (38%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--APG-QGLY-RSPMPGA-------A 57
S G GA G G A G G GPP GP +PG QG+ S PGA
Sbjct: 934 SPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG 993
Query: 58 YPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
P P LPG T G PG GNP
Sbjct: 994 PPGPQGLPGLAGT-----AGEPGRDGNP 1016
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/100 (30%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
S P G G SG GA G G PGP P G A G +P R G
Sbjct: 970 SPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG 1029
Query: 66 GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
G + S G PG G+P + +G R P
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGP 1069
Score = 35.0 bits (79), Expect = 0.16
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPP---------------------VRMGPAPGQGLYR 50
P G G +G G G G+PGPP V+ G A G GL
Sbjct: 113 PPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG-GLAG 171
Query: 51 SPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
P P A P P PG+ P P G PGY G P PG A
Sbjct: 172 YPGP-AGPPGPPGPPGTSGHPGSP--GSPGYQGPPG-EPGQA 209
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 1 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
M AR +G G GGAG G G PGP G A G+ +
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469
Query: 61 PGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLAQSGMDQSRKRPAP 105
PG + + G PG+ G P+ PG + G R P P
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNGIPG--EKGPAGERGAPGP 514
Score = 33.1 bits (74), Expect = 0.62
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMG-----PAPGQ----GLYRSP-MPGAAYPRPGM 63
G G G G GP G G P G APG+ GL +P + G A P PG
Sbjct: 645 GTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP-PGP 703
Query: 64 LPGSRMT-PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
G P GP + G PG G P R GL G + P
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP 746
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQ-GLYRSPMPGAAYPRPG 62
G + P+G GA G GA GP G G P G A PG+ G P P G
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAG 453
Query: 63 M--LPGSR-MTPQGPSMGPPGYGGNP 85
+ +PG++ + S G PG G P
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLP 479
Score = 30.8 bits (68), Expect = 3.1
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGA--AYPRPGMLPGSR 68
P G G +G AG G G+ G P R G G+G + PGA A PG P
Sbjct: 997 PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG--PPGP 1054
Query: 69 MTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
+ P G S GP G G P G SR P PQ
Sbjct: 1055 VGPAGKSGDRGESGPAGPAGAP---------GPAGSRGAPGPQ 1088
Score = 30.0 bits (66), Expect = 5.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG 45
P G G G G+ G G PGPP GP G
Sbjct: 1165 PRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCG 1198
Score = 29.3 bits (64), Expect = 9.0
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 29 GPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSV 87
GP G PGPP G G+ P PG+ P PG+ P GP P Y + V
Sbjct: 106 GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGP-PGI---CESCPTGPQNYSPQY-DSYDV 160
Query: 88 RPGLAQSGM 96
+ G+A G+
Sbjct: 161 KSGVAVGGL 169
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 49.3 bits (116), Expect = 8e-06
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG-------QGLYRSPMPGAAYPRP 61
+V P G AG G +G A GP GTPGP +G APG +G P A P
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG-APGILGLPGSRGERGLPGVAGAVGEP 894
Query: 62 GML-----PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
G L PG+R GPPG G+P V ++G D + P
Sbjct: 895 GPLGIAGPPGAR--------GPPGAVGSPGVNGAPGEAGRDGNPGNDGP 935
Score = 47.4 bits (111), Expect = 3e-05
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGS 67
+ P G GA+G G GP G PG P + GPA +G P PG PG
Sbjct: 96 MGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGE 155
Query: 68 R--MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
R + PQG + G PG G P + +G+D + +P
Sbjct: 156 RGVVGPQG-ARGFPGTPGLPGFKGIRGHNGLDGLKGQP 192
Score = 47.0 bits (110), Expect = 4e-05
Identities = 33/84 (39%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G AG G GA ++GP G GP GPA G R+ PG P P P G
Sbjct: 1033 GIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG--RTGHPGTVGPAGIRGPQGHQGPAG 1090
Query: 74 PSMGPPGYGGNPSVRPGLAQSGMD 97
P GPPG G P V G G D
Sbjct: 1091 PP-GPPGPPGPPGVSGGGYDFGYD 1113
Score = 45.4 bits (106), Expect = 1e-04
Identities = 41/117 (35%), Positives = 49/117 (41%), Gaps = 20/117 (17%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYPRP 61
RAG + P G GASG AG G G PG P MGP +GL SP + A P
Sbjct: 413 RAGV--MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGP---RGLPGSPGNIGPAGKEGP 467
Query: 62 GMLPG--SRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
LPG R P GP+ GP G G+P +G+ +R P P
Sbjct: 468 VGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP 524
Score = 43.1 bits (100), Expect = 6e-04
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G +GA+G G + GP G PGP G G + P P LPG R
Sbjct: 593 PPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSG----PSGLPGERGAA 648
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G G G P +R + G D +R P
Sbjct: 649 GIP--GGKGEKGEPGLRGEIGNPGRDGARGAP 678
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/93 (37%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMTP 71
G AG G AGA GP G PGP G +GL P P + G PGS P
Sbjct: 310 GAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGS-AGP 368
Query: 72 QGP--------SMGPPGYGGN--PSVRPGLAQS 94
QGP GP G G+ P PGL S
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS 401
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
+G G +G GAA GP G PGP G G+ + PGAA R P
Sbjct: 750 NGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM--TGFPGAA---------GRTGPP 798
Query: 73 GPS--MGPPGYGGNPSVRPGLAQSGMDQ 98
GPS GPPG G P+ + GL DQ
Sbjct: 799 GPSGISGPPGPPG-PAGKEGLRGPRGDQ 825
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G AG GP G GPP GPA +GL PR P R T
Sbjct: 782 PPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGL--------RGPRGDQGPVGR-TG 832
Query: 72 QGPSMGPPGYGG--NPSVRPGLA 92
+ ++GPPG+ G PS G A
Sbjct: 833 EVGAVGPPGFAGEKGPSGEAGTA 855
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G AGA A G G PGP G + +G PG+A P+ P
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG-----EPGSAGPQGPPGPSGEEGK 380
Query: 72 QGPS--------MGPPGYGGNPSVR 88
+GP+ GPPG G+P R
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSR 405
Score = 39.7 bits (91), Expect = 0.007
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----PGQ-GLY-RSPMPGAAYPRPGML 64
P G G GG G GP G G P GPA PG+ GL+ +PG A PR
Sbjct: 533 PPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERG 592
Query: 65 PGSRMTPQGPS--------MGPPGYGGNPSVRPGL 91
P GP+ GPPG GN PG+
Sbjct: 593 PPGESGAAGPTGPIGSRGPSGPPGPDGNKG-EPGV 626
Score = 39.3 bits (90), Expect = 0.009
Identities = 29/78 (37%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRM 69
P+G G SG G + GP G PGP G G S P PG+ PGSR
Sbjct: 350 PAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP---PGLRGSPGSRG 406
Query: 70 TP----QGPSMGPPGYGG 83
P + MGPPG G
Sbjct: 407 LPGADGRAGVMGPPGSRG 424
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G GA G G A G GTPG G +G +P P A G + + P G
Sbjct: 190 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSV--GPVGPAG 247
Query: 74 P--SMGPPGYGGNPSVRPGLAQSG 95
P S GPPG+ G P + + G
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVG 271
Score = 38.9 bits (89), Expect = 0.011
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPG------GTPGPPVRMGPAPGQGLY----RSP 52
AR +V G AGA+G G A A GP G+PG +GPA G +
Sbjct: 674 ARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733
Query: 53 MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLAQSGMD 97
PGA R P GP+ GP G G P+ PG A S D
Sbjct: 734 QPGAKGERGAKGPKGENGVVGPT-GPVGAAGPAGPNGPPGPAGSRGD 779
Score = 38.1 bits (87), Expect = 0.019
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG--SRM 69
P G G G G GP G PGPP GP G + + G G+ PG M
Sbjct: 40 PRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGV---GLGPGPMGLM 96
Query: 70 TPQGP-----SMGPPGYGGNPSVRPG 90
P+GP + GP G+ G P+ PG
Sbjct: 97 GPRGPPGAAGAPGPQGFQG-PAGEPG 121
Score = 37.4 bits (85), Expect = 0.033
Identities = 37/91 (40%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGML 64
S P G G SG G G G+ GPP GP GL SP +PGA R G++
Sbjct: 365 SAGPQGPPGPSGEEGKRGPNGEAGSAGPP---GP---PGLRGSPGSRGLPGAD-GRAGVM 417
Query: 65 --PGSRMTPQGPS--MGPPGYGGNPSVRPGL 91
PGSR GP+ GP G G P PGL
Sbjct: 418 GPPGSR-GASGPAGVRGPNGDAGRPG-EPGL 446
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
+ P+G AG G G GP G PG P G +G + +PG A PG LPG R
Sbjct: 272 NAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKG--AAGLPGVA-GAPG-LPGPR 327
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
P GP G G R + + G
Sbjct: 328 GIP-----GPVGAAGATGARGLVGEPG 349
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/82 (36%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-------- 63
P G GA G G G G GPP GP QGL P +PG
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPP---GPPGFQGLPGPSGPAGEVGKPGERGLHGEFG 580
Query: 64 LPGSRMTPQGP--SMGPPGYGG 83
LPG P GP GPPG G
Sbjct: 581 LPG----PAGPRGERGPPGESG 598
Score = 35.8 bits (81), Expect = 0.096
Identities = 35/103 (33%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQ----GLYRSPMP-GAAYPRPGM-LP 65
P+G G+ G G GP G+ GPP G APG G + P G A PR + LP
Sbjct: 230 PAGARGSDGSVGPVGPAGPIGSAGPPGFPG-APGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 66 GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQI 108
G P GP G PG G + G+ + P P+ I
Sbjct: 289 G-LSGPVGPP-GNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI 329
Score = 35.8 bits (81), Expect = 0.096
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G AG +G GA G G GPP G G+G P P PG + P G
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGP----------PGFQGLP-G 559
Query: 74 PSMGPPGYGGNPSVR 88
PS GP G G P R
Sbjct: 560 PS-GPAGEVGKPGER 573
Score = 34.7 bits (78), Expect = 0.21
Identities = 29/88 (32%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML- 64
G A G G G G +GP G PG GP QG P PG
Sbjct: 74 GGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQG------PAGEPGEPGQTG 127
Query: 65 PGSRMTPQGP--SMGPPGYGGNPSVRPG 90
P P GP G G+ G P RPG
Sbjct: 128 PAGARGPAGPPGKAGEDGHPGKPG-RPG 154
Score = 34.7 bits (78), Expect = 0.21
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-PGQGLYRSPMPGAAYP--RPGMLPG 66
V P+G G++G G A GP G G GPA P +PG + P PG
Sbjct: 243 VGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGA 302
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPG 90
+ +T + G PG G P + PG
Sbjct: 303 NGLTGAKGAAGLPGVAGAPGL-PG 325
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQGLYRSPMPGAAYPRPGMLPG 66
+ PSG +G G GAA G G G P G PG+ R P P G
Sbjct: 632 TAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATG 691
Query: 67 SR--MTPQGPSMGPPGYGGNPSVRPGLAQSG 95
R GP+ GP G G+P R + +G
Sbjct: 692 DRGEAGAAGPA-GPAGPRGSPGERGEVGPAG 721
Score = 34.3 bits (77), Expect = 0.28
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G +G G PGP +GPA G G P + P + P+G
Sbjct: 943 GHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHG-----NRGETGPSGPVGPAGAVGPRG 997
Query: 74 PSMGPPGYGGN 84
PS GP G G+
Sbjct: 998 PS-GPQGIRGD 1007
Score = 32.7 bits (73), Expect = 0.81
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAA 57
+V P+G G G G A GP G PGPP G G YR+ P +A
Sbjct: 1073 TVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSA 1125
Score = 32.3 bits (72), Expect = 1.1
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPGSR 68
+G G G G A GP G G +GP G S PGA P+ +
Sbjct: 213 TGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGN 272
Query: 69 MTPQGPSMGPPGYGGNPSV 87
P GP+ GP G G P +
Sbjct: 273 AGPAGPA-GPRGEVGLPGL 290
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
V P+G G G G + +GP G GP GP+ QG+ PG PR LPG
Sbjct: 969 VGPAGKHGNRGETGPSGPVGPAGAVGP---RGPSGPQGIRGDKGEPGEKGPRG--LPG-- 1021
Query: 69 MTPQGPSMGPPGYGGN 84
+ G PG G+
Sbjct: 1022 LKGHNGLQGLPGIAGH 1037
Score = 30.0 bits (66), Expect = 5.3
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 9 SVAPSGGAGASGG---AGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR----P 61
++ P G AGA G G A G G GP +GPA GA PR P
Sbjct: 953 NIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPA-----------GAVGPRGPSGP 1001
Query: 62 GMLPGSRMTP--QGPSMGPPGYGGNPSVR--PGLAQSGMDQ 98
+ G + P +GP G PG G+ ++ PG+A DQ
Sbjct: 1002 QGIRGDKGEPGEKGP-RGLPGLKGHNGLQGLPGIAGHHGDQ 1041
Score = 29.3 bits (64), Expect = 9.0
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 21/65 (32%)
Query: 20 GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPP 79
G AG G G PGPP R G G PG P GP GPP
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTG-----PPG---------------PPGPP-GPP 71
Query: 80 GYGGN 84
G GGN
Sbjct: 72 GLGGN 76
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 48.9 bits (115), Expect = 1e-05
Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
V P G AG +G G GP G PG G A +G P P A + G
Sbjct: 841 VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 900
Query: 65 PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R P +GPS GPPG G+P R G RP PQ
Sbjct: 901 PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 952
Score = 46.6 bits (109), Expect = 5e-05
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G +LGP G PGPP + G QGL PG P+ + P P
Sbjct: 537 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 588
Query: 72 QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
QG P M GPPG+ G P + SG P P+ ++ V
Sbjct: 589 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 639
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
PSG G +G G A G GG GPP R GP P +PG P + P R
Sbjct: 921 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 977
Query: 71 PQGPSMGPPGYGGNPSV 87
QGP +G PG G P V
Sbjct: 978 VQGP-VGLPGPAGPPGV 993
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
+ P G G SG G GP G PGPP VR GP G P P PG
Sbjct: 511 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 570
Query: 64 --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
LPG PQG ++GP G G P +PGL
Sbjct: 571 QGLPG----PQG-AIGPHGEKG-PQGKPGL 594
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A GP G GPP GPA +G + PG G+
Sbjct: 1350 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1401
Query: 72 QGPSMGPPGYGGNP 85
GPPG+ G P
Sbjct: 1402 ----QGPPGHPGPP 1411
Score = 39.3 bits (90), Expect = 0.009
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G SG G +GP G PGPP GPA G P G PG + P G
Sbjct: 1073 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1130
Query: 74 PSMGPPGYGGNPSVRPGLAQSG 95
S G PG G P V+ + G
Sbjct: 1131 ES-GSPGIQGEPGVKGPRGERG 1151
Score = 39.3 bits (90), Expect = 0.009
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G+ G G A G G G P + GP G P P PG +
Sbjct: 1236 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1295
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
GPPG G P + PGL
Sbjct: 1296 ATGQAGPPGPVGPPGL-PGL 1314
Score = 37.4 bits (85), Expect = 0.033
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)
Query: 10 VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
+ P G GA+G G A GP G PGP G P P G+
Sbjct: 1027 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1086
Query: 50 RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
PM PG PR P PQGP ++GPPG G P S PG+
Sbjct: 1087 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1137
Score = 37.0 bits (84), Expect = 0.043
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
V G G G G GP G PGPP MG G+ +PG YP R
Sbjct: 673 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 721
Query: 70 TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P+G S+G PG+ G + SG R P
Sbjct: 722 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 756
Score = 37.0 bits (84), Expect = 0.043
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G SG G + GP G PG P GP G P P PG PG R
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 823
Query: 69 --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ QG + GPPG G + ++G R P P
Sbjct: 824 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 861
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
P G G G G A G G PGP P R G G + P+ A + +
Sbjct: 335 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 391
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
L +R+ +GP GP GY G P PGL D + P Q
Sbjct: 392 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 439
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
S G G G G A+G G GP GPA PG GL P RPG
Sbjct: 1239 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1297
Query: 66 GSRMTPQGPSMGPPGYGG 83
+ P GP +GPPG G
Sbjct: 1298 -GQAGPPGP-VGPPGLPG 1313
Score = 34.7 bits (78), Expect = 0.21
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
G G G G G G PGPP G G + +PG + PR PG+
Sbjct: 476 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 535
Query: 64 -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R PQGP S+GP G G P Q G ++ P PQ
Sbjct: 536 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 577
Score = 34.7 bits (78), Expect = 0.21
Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G G GA G GT G GP +GL PG P PG P
Sbjct: 756 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 804
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+GP GPPG G P + G P P
Sbjct: 805 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 837
Score = 33.9 bits (76), Expect = 0.37
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
SV G GA+G AG GP G PG P G A +G P PG
Sbjct: 1287 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1343
Query: 64 ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
LPG + +P Q MG PG G P PGL
Sbjct: 1344 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1377
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
++ P G G G G G G PG P + GP +G P YP P + G
Sbjct: 579 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 638
Query: 67 --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
+G G PG+ G+ V+ + G+ SR P+
Sbjct: 639 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 685
Score = 33.5 bits (75), Expect = 0.48
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
+ P G G G AG A GP G PG +GP +G PG+ P
Sbjct: 1090 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1149
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G S G PG G P + +G D + P P
Sbjct: 1150 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1182
Score = 33.1 bits (74), Expect = 0.62
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
P+G G G AG+ +GP G PGP +GP G+ + P +P
Sbjct: 927 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 985
Query: 55 GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
G A P PG+ PG + T GPPG G P +PG A + +
Sbjct: 986 GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1044
Query: 101 KRP 103
+ P
Sbjct: 1045 RGP 1047
Score = 32.7 bits (73), Expect = 0.81
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 10 VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
+ P G G G A GA A GPG G GPP GP PG+ + P+ R
Sbjct: 1369 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1427
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+ GSR+ + ++ G G+P
Sbjct: 1428 RS-VDGSRLMQEDEAIPTGGAPGSP 1451
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
G G G G +GP G PG P +GP G+ P M G P+ + P
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 556
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G G PG G P + + G + +P
Sbjct: 557 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 592
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
P G G G G +G G PGPP GP G +PG P
Sbjct: 1167 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1226
Query: 71 PQGP--SMGPPGYGGNPSVRPGLAQSG 95
P GP GP G G+ + G G
Sbjct: 1227 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1253
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
G ++ P G G G +G+ G G GP G G P PG P
Sbjct: 1116 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1175
Query: 61 PGMLPGSRMTPQGPSMGPPGYGG 83
P PG P P GPPG GG
Sbjct: 1176 PKGNPGPVGFPGDP--GPPGEGG 1196
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G G G PGPP GP G +P P PG P P+G
Sbjct: 1142 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1199
Query: 74 P--SMGPPGYGGNPSVRPG 90
+ G G G P +PG
Sbjct: 1200 QDGAKGDRGEDGEPG-QPG 1217
Score = 30.8 bits (68), Expect = 3.1
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
G AG G G GP G G P G A G P PG P PG +PG
Sbjct: 908 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 966
Query: 68 RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
+ P GP+ GP G G P+ PG+A D+
Sbjct: 967 K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 1000
Score = 30.8 bits (68), Expect = 3.1
Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
P G G +G G GP G PG P GP PG+G R GA R PG PG
Sbjct: 1164 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1217
Query: 67 SRMTPQGPSMGPPGYGG--NPSVRPG 90
S P G + GPPG G P+ PG
Sbjct: 1218 S-PGPTGEN-GPPGPLGKRGPAGSPG 1241
Score = 30.4 bits (67), Expect = 4.0
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G+ G G + LGP G GP GP PG+ R R G G+R P
Sbjct: 414 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 463
Query: 72 QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P + G G+ G P + G ++ P P
Sbjct: 464 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 498
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 48.9 bits (115), Expect = 1e-05
Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
V P G AG +G G GP G PG G A +G P P A + G
Sbjct: 820 VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 879
Query: 65 PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R P +GPS GPPG G+P R G RP PQ
Sbjct: 880 PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 931
Score = 46.6 bits (109), Expect = 5e-05
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G +LGP G PGPP + G QGL PG P+ + P P
Sbjct: 516 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 567
Query: 72 QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
QG P M GPPG+ G P + SG P P+ ++ V
Sbjct: 568 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 618
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
PSG G +G G A G GG GPP R GP P +PG P + P R
Sbjct: 900 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 956
Query: 71 PQGPSMGPPGYGGNPSV 87
QGP +G PG G P V
Sbjct: 957 VQGP-VGLPGPAGPPGV 972
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
+ P G G SG G GP G PGPP VR GP G P P PG
Sbjct: 490 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 549
Query: 64 --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
LPG PQG ++GP G G P +PGL
Sbjct: 550 QGLPG----PQG-AIGPHGEKG-PQGKPGL 573
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A GP G GPP GPA +G + PG G+
Sbjct: 1329 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1380
Query: 72 QGPSMGPPGYGGNP 85
GPPG+ G P
Sbjct: 1381 ----QGPPGHPGPP 1390
Score = 39.3 bits (90), Expect = 0.009
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G SG G +GP G PGPP GPA G P G PG + P G
Sbjct: 1052 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1109
Query: 74 PSMGPPGYGGNPSVRPGLAQSG 95
S G PG G P V+ + G
Sbjct: 1110 ES-GSPGIQGEPGVKGPRGERG 1130
Score = 39.3 bits (90), Expect = 0.009
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G+ G G A G G G P + GP G P P PG +
Sbjct: 1215 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1274
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
GPPG G P + PGL
Sbjct: 1275 ATGQAGPPGPVGPPGL-PGL 1293
Score = 37.4 bits (85), Expect = 0.033
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)
Query: 10 VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
+ P G GA+G G A GP G PGP G P P G+
Sbjct: 1006 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1065
Query: 50 RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
PM PG PR P PQGP ++GPPG G P S PG+
Sbjct: 1066 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1116
Score = 37.0 bits (84), Expect = 0.043
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
V G G G G GP G PGPP MG G+ +PG YP R
Sbjct: 652 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 700
Query: 70 TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P+G S+G PG+ G + SG R P
Sbjct: 701 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 735
Score = 37.0 bits (84), Expect = 0.043
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G SG G + GP G PG P GP G P P PG PG R
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 802
Query: 69 --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ QG + GPPG G + ++G R P P
Sbjct: 803 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 840
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
P G G G G A G G PGP P R G G + P+ A + +
Sbjct: 314 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 370
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
L +R+ +GP GP GY G P PGL D + P Q
Sbjct: 371 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 418
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
S G G G G A+G G GP GPA PG GL P RPG
Sbjct: 1218 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1276
Query: 66 GSRMTPQGPSMGPPGYGG 83
+ P GP +GPPG G
Sbjct: 1277 -GQAGPPGP-VGPPGLPG 1292
Score = 34.7 bits (78), Expect = 0.21
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
G G G G G G PGPP G G + +PG + PR PG+
Sbjct: 455 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 514
Query: 64 -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R PQGP S+GP G G P Q G ++ P PQ
Sbjct: 515 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 556
Score = 34.7 bits (78), Expect = 0.21
Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G G GA G GT G GP +GL PG P PG P
Sbjct: 735 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 783
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+GP GPPG G P + G P P
Sbjct: 784 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 816
Score = 33.9 bits (76), Expect = 0.37
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
SV G GA+G AG GP G PG P G A +G P PG
Sbjct: 1266 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1322
Query: 64 ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
LPG + +P Q MG PG G P PGL
Sbjct: 1323 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1356
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
++ P G G G G G G PG P + GP +G P YP P + G
Sbjct: 558 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 617
Query: 67 --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
+G G PG+ G+ V+ + G+ SR P+
Sbjct: 618 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 664
Score = 33.5 bits (75), Expect = 0.48
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
+ P G G G AG A GP G PG +GP +G PG+ P
Sbjct: 1069 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1128
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G S G PG G P + +G D + P P
Sbjct: 1129 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1161
Score = 33.1 bits (74), Expect = 0.62
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
P+G G G AG+ +GP G PGP +GP G+ + P +P
Sbjct: 906 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 964
Query: 55 GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
G A P PG+ PG + T GPPG G P +PG A + +
Sbjct: 965 GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1023
Query: 101 KRP 103
+ P
Sbjct: 1024 RGP 1026
Score = 32.7 bits (73), Expect = 0.81
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 10 VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
+ P G G G A GA A GPG G GPP GP PG+ + P+ R
Sbjct: 1348 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1406
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+ GSR+ + ++ G G+P
Sbjct: 1407 RS-VDGSRLMQEDEAIPTGGAPGSP 1430
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
G G G G +GP G PG P +GP G+ P M G P+ + P
Sbjct: 476 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 535
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G G PG G P + + G + +P
Sbjct: 536 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 571
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
P G G G G +G G PGPP GP G +PG P
Sbjct: 1146 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1205
Query: 71 PQGP--SMGPPGYGGNPSVRPGLAQSG 95
P GP GP G G+ + G G
Sbjct: 1206 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1232
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
G ++ P G G G +G+ G G GP G G P PG P
Sbjct: 1095 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1154
Query: 61 PGMLPGSRMTPQGPSMGPPGYGG 83
P PG P P GPPG GG
Sbjct: 1155 PKGNPGPVGFPGDP--GPPGEGG 1175
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G G G PGPP GP G +P P PG P P+G
Sbjct: 1121 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1178
Query: 74 P--SMGPPGYGGNPSVRPG 90
+ G G G P +PG
Sbjct: 1179 QDGAKGDRGEDGEPG-QPG 1196
Score = 30.8 bits (68), Expect = 3.1
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
G AG G G GP G G P G A G P PG P PG +PG
Sbjct: 887 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 945
Query: 68 RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
+ P GP+ GP G G P+ PG+A D+
Sbjct: 946 K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 979
Score = 30.8 bits (68), Expect = 3.1
Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
P G G +G G GP G PG P GP PG+G R GA R PG PG
Sbjct: 1143 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1196
Query: 67 SRMTPQGPSMGPPGYGG--NPSVRPG 90
S P G + GPPG G P+ PG
Sbjct: 1197 S-PGPTGEN-GPPGPLGKRGPAGSPG 1220
Score = 30.4 bits (67), Expect = 4.0
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G+ G G + LGP G GP GP PG+ R R G G+R P
Sbjct: 393 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 442
Query: 72 QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P + G G+ G P + G ++ P P
Sbjct: 443 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 477
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 48.9 bits (115), Expect = 1e-05
Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----L 64
V P G AG +G G GP G PG G A +G P P A + G
Sbjct: 927 VGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGF 986
Query: 65 PGSRMTP-----------QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R P +GPS GPPG G+P R G RP PQ
Sbjct: 987 PGERGLPGTAGGPGLKGNEGPS-GPPGPAGSPGERGAAGSGGPIGPPGRPGPQ 1038
Score = 46.6 bits (109), Expect = 5e-05
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G +LGP G PGPP + G QGL PG P+ + P P
Sbjct: 623 PPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGL-----PG---PQGAIGPHGEKGP 674
Query: 72 QG----PSM----GPPGYGGN---PSVRPGLAQSGMDQSRKRPAPQQIQQV 111
QG P M GPPG+ G P + SG P P+ ++ V
Sbjct: 675 QGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGV 725
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAYPRPGMLPGSRMT 70
PSG G +G G A G GG GPP R GP P +PG P + P R
Sbjct: 1007 PSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP---IGPTGRDG 1063
Query: 71 PQGPSMGPPGYGGNPSV 87
QGP +G PG G P V
Sbjct: 1064 VQGP-VGLPGPAGPPGV 1079
Score = 42.4 bits (98), Expect = 0.001
Identities = 36/90 (40%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPP-VR-----MGPAPGQGLYRSPMPGAAYPRPGM 63
+ P G G SG G GP G PGPP VR GP G P P PG
Sbjct: 597 IGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGT 656
Query: 64 --LPGSRMTPQGPSMGPPGYGGNPSVRPGL 91
LPG PQG ++GP G G P +PGL
Sbjct: 657 QGLPG----PQG-AIGPHGEKG-PQGKPGL 680
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A GP G GPP GPA +G + PG G+
Sbjct: 1436 PQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------- 1487
Query: 72 QGPSMGPPGYGGNP 85
GPPG+ G P
Sbjct: 1488 ----QGPPGHPGPP 1497
Score = 39.3 bits (90), Expect = 0.009
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G SG G +GP G PGPP GPA G P G PG + P G
Sbjct: 1159 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGP-PGEKGEP-G 1216
Query: 74 PSMGPPGYGGNPSVRPGLAQSG 95
S G PG G P V+ + G
Sbjct: 1217 ES-GSPGIQGEPGVKGPRGERG 1237
Score = 39.3 bits (90), Expect = 0.009
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G+ G G A G G G P + GP G P P PG +
Sbjct: 1322 PAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG 1381
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
GPPG G P + PGL
Sbjct: 1382 ATGQAGPPGPVGPPGL-PGL 1400
Score = 37.4 bits (85), Expect = 0.033
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 29/111 (26%)
Query: 10 VAPSGGAGASGGAGAAAALGP---------------GGTPGPPVRMG-PAP----GQGLY 49
+ P G GA+G G A GP G PGP G P P G+
Sbjct: 1113 IGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD 1172
Query: 50 RSPM--PGAAYPRPGMLPGSRMTPQGP-----SMGPPGYGGNP--SVRPGL 91
PM PG PR P PQGP ++GPPG G P S PG+
Sbjct: 1173 VGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI 1223
Score = 37.0 bits (84), Expect = 0.043
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRM 69
V G G G G GP G PGPP MG G+ +PG YP R
Sbjct: 759 VGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV--PGLPG--YP-------GRQ 807
Query: 70 TPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P+G S+G PG+ G + SG R P
Sbjct: 808 GPKG-SLGFPGFPGASGEKGARGLSGKSGPRGERGP 842
Score = 37.0 bits (84), Expect = 0.043
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP---PVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G SG G + GP G PG P GP G P P PG PG R
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH-PGQR 909
Query: 69 --MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ QG + GPPG G + ++G R P P
Sbjct: 910 GEVGFQGKT-GPPGPPGVVGPQGAAGETGPMGERGHPGP 947
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGP-------PVRMGPAPGQGLYRSPMPGAAYPR-PGM 63
P G G G G A G G PGP P R G G + P+ A + +
Sbjct: 421 PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGD---KGPVVAAQEAQAQAI 477
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV-----RPGLAQSGMDQSRKRPAPQQ 107
L +R+ +GP GP GY G P PGL D + P Q
Sbjct: 478 LQQARLALRGPP-GPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQ 525
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPA--PG-QGLYRSPMPGAAYPRPGMLP 65
S G G G G A+G G GP GPA PG GL P RPG
Sbjct: 1325 SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGAT- 1383
Query: 66 GSRMTPQGPSMGPPGYGG 83
+ P GP +GPPG G
Sbjct: 1384 -GQAGPPGP-VGPPGLPG 1399
Score = 34.7 bits (78), Expect = 0.21
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 21/108 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG-LYRSPMPGAAYPR--------PGM- 63
G G G G G G PGPP G G + +PG + PR PG+
Sbjct: 562 GLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIP 621
Query: 64 -LPGSRMT--PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
PG R PQGP S+GP G G P Q G ++ P PQ
Sbjct: 622 GPPGVRGMDGPQGPKGSLGPQGEPGPP------GQQGTPGTQGLPGPQ 663
Score = 34.7 bits (78), Expect = 0.21
Identities = 31/94 (32%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G G G GA G GT G GP +GL PG P PG P
Sbjct: 842 PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL-----PGP--QGPNGFPG----P 890
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+GP GPPG G P + G P P
Sbjct: 891 KGPP-GPPGKDGLPGHPGQRGEVGFQGKTGPPGP 923
Score = 33.9 bits (76), Expect = 0.37
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM----- 63
SV G GA+G AG GP G PG P G A +G P PG
Sbjct: 1373 SVGQQGRPGATGQAGPP---GPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKG 1429
Query: 64 ---LPGSRMTP-QGPSMGPPGYGG--NPSVRPGL 91
LPG + +P Q MG PG G P PGL
Sbjct: 1430 DRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1463
Score = 33.5 bits (75), Expect = 0.48
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLY--RSPMPGAAYPRPGMLPG 66
++ P G G G G G G PG P + GP +G P YP P + G
Sbjct: 665 AIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKG 724
Query: 67 --------SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
+G G PG+ G+ V+ + G+ SR P+
Sbjct: 725 VDGIRGLKGHKGEKGED-GFPGFKGDIGVKGDRGEVGVPGSRGEDGPE 771
Score = 33.5 bits (75), Expect = 0.48
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSR 68
+ P G G G AG A GP G PG +GP +G PG+ P
Sbjct: 1176 MGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGE 1235
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G S G PG G P + +G D + P P
Sbjct: 1236 RGEKGES-GQPGEPGPPGPK---GPTGDDGPKGNPGP 1268
Score = 33.1 bits (74), Expect = 0.62
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 33/123 (26%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPP---------------VRMGPAPGQGLYRSP--MP 54
P+G G G AG+ +GP G PGP +GP G+ + P +P
Sbjct: 1013 PAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGV-QGPVGLP 1071
Query: 55 GAAYPRPGML-----------PGSRMTPQGP-SMGPPGYGG--NPSVRPGLAQSGMDQSR 100
G A P PG+ PG + T GPPG G P +PG A + +
Sbjct: 1072 GPAGP-PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGA 1130
Query: 101 KRP 103
+ P
Sbjct: 1131 RGP 1133
Score = 32.7 bits (73), Expect = 0.81
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 10 VAPSGGAGASGGA---GAAAALGPG------GTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
+ P G G G A GA A GPG G GPP GP PG+ + P+ R
Sbjct: 1455 IGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGP-PGEVIQPLPIQMPKKTR 1513
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+ GSR+ + ++ G G+P
Sbjct: 1514 RS-VDGSRLMQEDEAIPTGGAPGSP 1537
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPG---PPVRMGPAPGQGLYRSP----MPGAAYPRPGMLPG 66
G G G G +GP G PG P +GP G+ P M G P+ + P
Sbjct: 583 GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQ 642
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
P G G PG G P + + G + +P
Sbjct: 643 GEPGPPG-QQGTPGTQGLPGPQGAIGPHGEKGPQGKP 678
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
P G G G G +G G PGPP GP G +PG P
Sbjct: 1253 PKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1312
Query: 71 PQGP--SMGPPGYGGNPSVRPGLAQSG 95
P GP GP G G+ + G G
Sbjct: 1313 PPGPLGKRGPAGSPGSEGRQGGKGAKG 1339
Score = 31.2 bits (69), Expect = 2.4
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPR---- 60
G ++ P G G G +G+ G G GP G G P PG P
Sbjct: 1202 GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDG 1261
Query: 61 PGMLPGSRMTPQGPSMGPPGYGG 83
P PG P P GPPG GG
Sbjct: 1262 PKGNPGPVGFPGDP--GPPGEGG 1282
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G G G PGPP GP G +P P PG P P+G
Sbjct: 1228 GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG--PPGEGGPRG 1285
Query: 74 P--SMGPPGYGGNPSVRPG 90
+ G G G P +PG
Sbjct: 1286 QDGAKGDRGEDGEPG-QPG 1303
Score = 30.8 bits (68), Expect = 3.1
Identities = 33/96 (34%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGM-----LPGS 67
G AG G G GP G G P G A G P PG P PG +PG
Sbjct: 994 GTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGP-PGAAGEKGVPGE 1052
Query: 68 RMTPQGPS-----MGPPGYGGNPSVRPGLAQSGMDQ 98
+ P GP+ GP G G P+ PG+A D+
Sbjct: 1053 K-GPIGPTGRDGVQGPVGLPG-PAGPPGVAGEDGDK 1086
Score = 30.8 bits (68), Expect = 3.1
Identities = 35/86 (40%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPG 66
P G G +G G GP G PG P GP PG+G R GA R PG PG
Sbjct: 1250 PPGPKGPTGDDGPKGNPGPVGFPGDP---GP-PGEGGPRG-QDGAKGDRGEDGEPGQ-PG 1303
Query: 67 SRMTPQGPSMGPPGYGG--NPSVRPG 90
S P G + GPPG G P+ PG
Sbjct: 1304 S-PGPTGEN-GPPGPLGKRGPAGSPG 1327
Score = 30.4 bits (67), Expect = 4.0
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G+ G G + LGP G GP GP PG+ R R G G+R P
Sbjct: 500 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGP-PGKAGRRG--------RAGA-DGARGMP 549
Query: 72 QGPSM-GPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P + G G+ G P + G ++ P P
Sbjct: 550 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGP 584
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
P G AGA G G A G G GPP + GP QG P P PG LPG
Sbjct: 1376 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435
Query: 67 S--RMTPQGPSMGPPGYGG 83
+ + P GP MGPPG G
Sbjct: 1436 AAGQDGPPGP-MGPPGLPG 1453
Score = 47.4 bits (111), Expect = 3e-05
Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
G G G AG LGP GTPG P + G P P + PG P P
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 711
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
LPG PQGP +GPPG G P +PGLA
Sbjct: 712 GLPG----PQGP-IGPPGEKG-PQGKPGLA 735
Score = 43.5 bits (101), Expect = 5e-04
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
V P G G +G G GP G PG G A +G P P +
Sbjct: 981 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 1040
Query: 59 PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P LPG++ P +GP GPPG G+P R +G RP PQ
Sbjct: 1041 PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1092
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
P+G G+ G G GP GT PGPP GP QG P P PG
Sbjct: 896 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955
Query: 64 ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PG R T GPPG GG + ++G R P P
Sbjct: 956 LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 1001
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
P G G+ GG G G G PGPP G +G + PGAA P P
Sbjct: 1253 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1312
Query: 68 RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
P+G + GP G+ G+P +G D
Sbjct: 1313 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1341
Score = 40.4 bits (93), Expect = 0.004
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
P G G+ G G+A GP G PG P GP APG+ + P P
Sbjct: 1064 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1123
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
LPG P GP+ G PG G+ PG S D+ P
Sbjct: 1124 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1160
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G G G +GP G P GP +GP G P PG P
Sbjct: 635 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 692
Query: 69 MTPQGPSMGPPGYGGNP 85
M PQG GPPG GNP
Sbjct: 693 MGPQG-EPGPPGQQGNP 708
Score = 39.3 bits (90), Expect = 0.009
Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
P+G G SG AG LG G PG P R GP G PGA +PG
Sbjct: 833 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 889
Query: 64 LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P + P GP + GP G G G G R PQ
Sbjct: 890 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 936
Score = 38.9 bits (89), Expect = 0.011
Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
G GA G G +G G PGPP G G PM PG PR P P
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1250
Query: 72 QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
QGP G PG GNP PG A G
Sbjct: 1251 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1284
Score = 38.1 bits (87), Expect = 0.019
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G GA G G GP G PGPP GP +G S P G LPG P G
Sbjct: 1492 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1546
Query: 74 PSMGPPG 80
S GPPG
Sbjct: 1547 -SPGPPG 1552
Score = 37.4 bits (85), Expect = 0.033
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
G G G G GP G GPP GP GL + +PGA P PG PG
Sbjct: 700 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 755
Query: 69 ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
+ P GP GP GY G V+ G+ S+
Sbjct: 756 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 789
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
AR P G +G G G GP G PGP GP GL P
Sbjct: 905 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 964
Query: 53 ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
G P PG PG + PQGP+ GPPG G + PG A G +
Sbjct: 965 ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 1018
Query: 99 SRKRPAPQQI 108
++ P PQ I
Sbjct: 1019 AKGDPGPQGI 1028
Score = 36.6 bits (83), Expect = 0.056
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
P G AG +G G GP G PG P GP PG R +PGA P P PG+ +
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 505
Query: 71 PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
M P YGG+ S P + AQ+ + Q+R
Sbjct: 506 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 536
Score = 36.6 bits (83), Expect = 0.056
Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
SG G G G GP G PG R G G+G+ PGA R PG LPG
Sbjct: 567 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 623
Query: 68 R-----MTPQGPSMGPPGYGG 83
+ PQGP GPPG G
Sbjct: 624 KGHRGERGPQGPP-GPPGDDG 643
Score = 36.2 bits (82), Expect = 0.074
Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
P G G G AG A GP G GPP GP G P+ P P PG
Sbjct: 1286 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1341
Query: 67 ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
+ P GPS GPPG G P + G
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1387
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G+ A G GG PGP +GP GL PG P+ +G
Sbjct: 1483 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1537
Query: 74 PS--MGPPGYGGNP 85
S GPPG G P
Sbjct: 1538 DSGLPGPPGSPGPP 1551
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
+ P G G G G GP G PGPP GPA G+ PG P P
Sbjct: 1301 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1359
Query: 62 GMLPGSRMTPQGP--SMGPPGYGG 83
G P P GP GPPG G
Sbjct: 1360 G--PSGEAGPPGPPGKRGPPGAAG 1381
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
+G G GG G++ A G G PGP GP QG RPG G M +
Sbjct: 549 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 605
Query: 73 GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ G G+ G P + G + P P
Sbjct: 606 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 638
Score = 34.7 bits (78), Expect = 0.21
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
P G G G G G G GPP MGP GL P PG++ P
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1477
Query: 68 RMTPQGPSMGPPGYGGNPSVR 88
+G G PG G+P +
Sbjct: 1478 EQGEKG-DRGLPGTQGSPGAK 1497
Score = 34.3 bits (77), Expect = 0.28
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
+ P G G +G G GP G PG P G P P G G +
Sbjct: 465 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 524
Query: 57 AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
+L +R+ +GP GP G G P G SG P PQ + VQ
Sbjct: 525 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 579
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
V P G G G G G G GPP +G G G P PG P
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1286
Query: 66 GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G + GPPG G P + G D + P P
Sbjct: 1287 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1322
Score = 33.5 bits (75), Expect = 0.48
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
P G G G G A G G PGPP GP PG+ + P+
Sbjct: 1520 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1560
Score = 32.7 bits (73), Expect = 0.81
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
+ P G G G G A G G PG P + G + +G P P YP P G+
Sbjct: 720 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
+ S G G G P + + G
Sbjct: 780 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 808
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
+G G G AG G G PGP G G P P PG+ PGS+
Sbjct: 1404 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1463
Query: 71 PQGPSM----GPPGYGGNPSVR 88
P + GPPG G R
Sbjct: 1464 KGHPGLIGLIGPPGEQGEKGDR 1485
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G +GP G GP GP G P P G L +
Sbjct: 802 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 858
Query: 74 PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP G G P + G +P P+
Sbjct: 859 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 891
Score = 30.4 bits (67), Expect = 4.0
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
R + P G G G G G G PG GPA G+ + P +PG A P
Sbjct: 1074 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1132
Query: 60 ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
PG + GPPG G P PG+A
Sbjct: 1133 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1176
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
G G G G+ G G PGPP GP G+ + GM G+R
Sbjct: 1141 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1200
Query: 69 MTPQGPSMGPPGYGGNP 85
P P GP G G P
Sbjct: 1201 GFPGPP--GPIGLQGLP 1215
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
V G GA+G G +GP G P GPP G +GL
Sbjct: 1428 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1487
Query: 49 YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
+ PGA G +PG P GP +GPPG G P
Sbjct: 1488 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1518
Score = 29.6 bits (65), Expect = 6.9
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
+ P G G G G A GP G PGP + G G+ P PG P+ GS
Sbjct: 816 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 867
Query: 69 MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P P G G G P R +G SR P
Sbjct: 868 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 908
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
P G AGA G G A G G GPP + GP QG P P PG LPG
Sbjct: 1325 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384
Query: 67 S--RMTPQGPSMGPPGYGG 83
+ + P GP MGPPG G
Sbjct: 1385 AAGQDGPPGP-MGPPGLPG 1402
Score = 47.4 bits (111), Expect = 3e-05
Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
G G G AG LGP GTPG P + G P P + PG P P
Sbjct: 601 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 660
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
LPG PQGP +GPPG G P +PGLA
Sbjct: 661 GLPG----PQGP-IGPPGEKG-PQGKPGLA 684
Score = 43.5 bits (101), Expect = 5e-04
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
V P G G +G G GP G PG G A +G P P +
Sbjct: 930 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 989
Query: 59 PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P LPG++ P +GP GPPG G+P R +G RP PQ
Sbjct: 990 PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1041
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
P+G G+ G G GP GT PGPP GP QG P P PG
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904
Query: 64 ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PG R T GPPG GG + ++G R P P
Sbjct: 905 LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 950
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
P G G+ GG G G G PGPP G +G + PGAA P P
Sbjct: 1202 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1261
Query: 68 RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
P+G + GP G+ G+P +G D
Sbjct: 1262 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1290
Score = 40.4 bits (93), Expect = 0.004
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
P G G+ G G+A GP G PG P GP APG+ + P P
Sbjct: 1013 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1072
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
LPG P GP+ G PG G+ PG S D+ P
Sbjct: 1073 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1109
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G G G +GP G P GP +GP G P PG P
Sbjct: 584 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 641
Query: 69 MTPQGPSMGPPGYGGNP 85
M PQG GPPG GNP
Sbjct: 642 MGPQG-EPGPPGQQGNP 657
Score = 39.3 bits (90), Expect = 0.009
Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
P+G G SG AG LG G PG P R GP G PGA +PG
Sbjct: 782 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 838
Query: 64 LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P + P GP + GP G G G G R PQ
Sbjct: 839 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 885
Score = 38.9 bits (89), Expect = 0.011
Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
G GA G G +G G PGPP G G PM PG PR P P
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1199
Query: 72 QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
QGP G PG GNP PG A G
Sbjct: 1200 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1233
Score = 38.1 bits (87), Expect = 0.019
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G GA G G GP G PGPP GP +G S P G LPG P G
Sbjct: 1441 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1495
Query: 74 PSMGPPG 80
S GPPG
Sbjct: 1496 -SPGPPG 1501
Score = 37.4 bits (85), Expect = 0.033
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
G G G G GP G GPP GP GL + +PGA P PG PG
Sbjct: 649 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 704
Query: 69 ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
+ P GP GP GY G V+ G+ S+
Sbjct: 705 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 738
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
AR P G +G G G GP G PGP GP GL P
Sbjct: 854 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 913
Query: 53 ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
G P PG PG + PQGP+ GPPG G + PG A G +
Sbjct: 914 ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 967
Query: 99 SRKRPAPQQI 108
++ P PQ I
Sbjct: 968 AKGDPGPQGI 977
Score = 36.6 bits (83), Expect = 0.056
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
P G AG +G G GP G PG P GP PG R +PGA P P PG+ +
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 454
Query: 71 PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
M P YGG+ S P + AQ+ + Q+R
Sbjct: 455 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 485
Score = 36.6 bits (83), Expect = 0.056
Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
SG G G G GP G PG R G G+G+ PGA R PG LPG
Sbjct: 516 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 572
Query: 68 R-----MTPQGPSMGPPGYGG 83
+ PQGP GPPG G
Sbjct: 573 KGHRGERGPQGPP-GPPGDDG 592
Score = 36.2 bits (82), Expect = 0.074
Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
P G G G AG A GP G GPP GP G P+ P P PG
Sbjct: 1235 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1290
Query: 67 ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
+ P GPS GPPG G P + G
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1336
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G+ A G GG PGP +GP GL PG P+ +G
Sbjct: 1432 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1486
Query: 74 PS--MGPPGYGGNP 85
S GPPG G P
Sbjct: 1487 DSGLPGPPGSPGPP 1500
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
+ P G G G G GP G PGPP GPA G+ PG P P
Sbjct: 1250 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1308
Query: 62 GMLPGSRMTPQGP--SMGPPGYGG 83
G P P GP GPPG G
Sbjct: 1309 G--PSGEAGPPGPPGKRGPPGAAG 1330
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
+G G GG G++ A G G PGP GP QG RPG G M +
Sbjct: 498 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 554
Query: 73 GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ G G+ G P + G + P P
Sbjct: 555 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 587
Score = 34.7 bits (78), Expect = 0.21
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
P G G G G G G GPP MGP GL P PG++ P
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1426
Query: 68 RMTPQGPSMGPPGYGGNPSVR 88
+G G PG G+P +
Sbjct: 1427 EQGEKG-DRGLPGTQGSPGAK 1446
Score = 34.3 bits (77), Expect = 0.28
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
+ P G G +G G GP G PG P G P P G G +
Sbjct: 414 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 473
Query: 57 AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
+L +R+ +GP GP G G P G SG P PQ + VQ
Sbjct: 474 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 528
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
V P G G G G G G GPP +G G G P PG P
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1235
Query: 66 GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G + GPPG G P + G D + P P
Sbjct: 1236 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1271
Score = 33.5 bits (75), Expect = 0.48
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
P G G G G A G G PGPP GP PG+ + P+
Sbjct: 1469 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1509
Score = 32.7 bits (73), Expect = 0.81
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
+ P G G G G A G G PG P + G + +G P P YP P G+
Sbjct: 669 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
+ S G G G P + + G
Sbjct: 729 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 757
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
+G G G AG G G PGP G G P P PG+ PGS+
Sbjct: 1353 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1412
Query: 71 PQGPSM----GPPGYGGNPSVR 88
P + GPPG G R
Sbjct: 1413 KGHPGLIGLIGPPGEQGEKGDR 1434
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G +GP G GP GP G P P G L +
Sbjct: 751 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 807
Query: 74 PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP G G P + G +P P+
Sbjct: 808 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 840
Score = 30.4 bits (67), Expect = 4.0
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
R + P G G G G G G PG GPA G+ + P +PG A P
Sbjct: 1023 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1081
Query: 60 ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
PG + GPPG G P PG+A
Sbjct: 1082 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1125
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
G G G G+ G G PGPP GP G+ + GM G+R
Sbjct: 1090 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1149
Query: 69 MTPQGPSMGPPGYGGNP 85
P P GP G G P
Sbjct: 1150 GFPGPP--GPIGLQGLP 1164
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
V G GA+G G +GP G P GPP G +GL
Sbjct: 1377 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1436
Query: 49 YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
+ PGA G +PG P GP +GPPG G P
Sbjct: 1437 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1467
Score = 29.6 bits (65), Expect = 6.9
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
+ P G G G G A GP G PGP + G G+ P PG P+ GS
Sbjct: 765 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 816
Query: 69 MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P P G G G P R +G SR P
Sbjct: 817 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 857
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/79 (41%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-----LPG 66
P G AGA G G A G G GPP + GP QG P P PG LPG
Sbjct: 1364 PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423
Query: 67 S--RMTPQGPSMGPPGYGG 83
+ + P GP MGPPG G
Sbjct: 1424 AAGQDGPPGP-MGPPGLPG 1441
Score = 47.4 bits (111), Expect = 3e-05
Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMG-------PAPGQGLYRSPMPG----AAYPRPG 62
G G G AG LGP GTPG P + G P P + PG P P
Sbjct: 640 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQ 699
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
LPG PQGP +GPPG G P +PGLA
Sbjct: 700 GLPG----PQGP-IGPPGEKG-PQGKPGLA 723
Score = 43.5 bits (101), Expect = 5e-04
Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-----------AY 58
V P G G +G G GP G PG G A +G P P +
Sbjct: 969 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF 1028
Query: 59 PRPGMLPGSRMTP-----QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P LPG++ P +GP GPPG G+P R +G RP PQ
Sbjct: 1029 PGERGLPGAQGAPGLKGGEGP-QGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1080
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 12 PSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
P+G G+ G G GP GT PGPP GP QG P P PG
Sbjct: 884 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943
Query: 64 ---LPGSR-MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
PG R T GPPG GG + ++G R P P
Sbjct: 944 LPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGP 989
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQG----LYRSPMPGAAYPRPGMLPGS 67
P G G+ GG G G G PGPP G +G + PGAA P P
Sbjct: 1241 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG 1300
Query: 68 RMTPQGPSMGPPGYGGNPSVRPGLAQSGMD 97
P+G + GP G+ G+P +G D
Sbjct: 1301 DDGPKG-NPGPVGFPGDPGPPGEPGPAGQD 1329
Score = 40.4 bits (93), Expect = 0.004
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPRPGM 63
P G G+ G G+A GP G PG P GP APG+ + P P
Sbjct: 1052 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVG 1111
Query: 64 LPGSRMTPQGPSMGPPGYGGNPSV--RPGLAQSGMDQSRKRP 103
LPG P GP+ G PG G+ PG S D+ P
Sbjct: 1112 LPG----PAGPA-GSPGEDGDKGEIGEPGQKGSKGDKGENGP 1148
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 12 PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
P G G G G +GP G P GP +GP G P PG P
Sbjct: 623 PPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG--PKGN 680
Query: 69 MTPQGPSMGPPGYGGNP 85
M PQG GPPG GNP
Sbjct: 681 MGPQG-EPGPPGQQGNP 696
Score = 39.3 bits (90), Expect = 0.009
Identities = 35/108 (32%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--------AYPRPGM 63
P+G G SG AG LG G PG P R GP G PGA +PG
Sbjct: 821 PTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGF--PGFPGANGEKGARGVAGKPG- 877
Query: 64 LPGSRMTPQGP-----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
P + P GP + GP G G G G R PQ
Sbjct: 878 -PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQ 924
Score = 38.9 bits (89), Expect = 0.011
Identities = 34/95 (35%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM--PGAAYPRPGMLPGSRMTP 71
G GA G G +G G PGPP G G PM PG PR P P
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVG----PMGPPGPPGPRGPQGPNGADGP 1238
Query: 72 QGP-----------SMGPPGYGGNPSVRPGLAQSG 95
QGP G PG GNP PG A G
Sbjct: 1239 QGPPGSVGSVGGVGEKGEPGEAGNPG-PPGEAGVG 1272
Score = 38.1 bits (87), Expect = 0.019
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G GA G G GP G PGPP GP +G S P G LPG P G
Sbjct: 1480 GSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSG-LPG----PPG 1534
Query: 74 PSMGPPG 80
S GPPG
Sbjct: 1535 -SPGPPG 1540
Score = 37.4 bits (85), Expect = 0.033
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR----- 68
G G G G GP G GPP GP GL + +PGA P PG PG
Sbjct: 688 GPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL--AGLPGADGP-PGH-PGKEGQSGE 743
Query: 69 ---MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSR 100
+ P GP GP GY G V+ G+ S+
Sbjct: 744 KGALGPPGP-QGPIGYPGPRGVKGADGVRGLKGSK 777
Score = 37.4 bits (85), Expect = 0.033
Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 30/130 (23%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPGGT------PGPPVRMGPAPGQGLYRSP---- 52
AR P G +G G G GP G PGP GP GL P
Sbjct: 893 ARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG 952
Query: 53 ---MPGAAYPRPGMLPGSRMTPQGPS-----------MGPPGYGGNPSVRPGLAQSGMDQ 98
G P PG PG + PQGP+ GPPG G + PG A G +
Sbjct: 953 ETGFQGKTGP-PG--PGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGL-PGAA--GKEG 1006
Query: 99 SRKRPAPQQI 108
++ P PQ I
Sbjct: 1007 AKGDPGPQGI 1016
Score = 36.6 bits (83), Expect = 0.056
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSRMT 70
P G AG +G G GP G PG P GP PG R +PGA P P PG+ +
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP-PG----RPGLPGADGLPGP---PGTML- 493
Query: 71 PQGPSMGPPGYGGNPSVRPGL------AQSGMDQSR 100
M P YGG+ S P + AQ+ + Q+R
Sbjct: 494 -----MLPFRYGGDGSKGPTISAQEAQAQAILQQAR 524
Score = 36.6 bits (83), Expect = 0.056
Identities = 32/81 (39%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR-----PGMLPGS 67
SG G G G GP G PG R G G+G+ PGA R PG LPG
Sbjct: 555 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGM--PGEPGAKGDRGFDGLPG-LPGD 611
Query: 68 R-----MTPQGPSMGPPGYGG 83
+ PQGP GPPG G
Sbjct: 612 KGHRGERGPQGPP-GPPGDDG 631
Score = 36.2 bits (82), Expect = 0.074
Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 26/106 (24%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG----- 66
P G G G AG A GP G GPP GP G P+ P P PG
Sbjct: 1274 PKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG----PVGFPGDPGPPGEPGPAGQD 1329
Query: 67 ------------SRMTPQGPS-----MGPPGYGGNPSVRPGLAQSG 95
+ P GPS GPPG G P + G
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG 1375
Score = 35.8 bits (81), Expect = 0.096
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G+ A G GG PGP +GP GL PG P+ +G
Sbjct: 1471 GDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGL-----PGPQGPKGNKGSTGPAGQKG 1525
Query: 74 PS--MGPPGYGGNP 85
S GPPG G P
Sbjct: 1526 DSGLPGPPGSPGPP 1539
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/84 (35%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGPAPGQGL----YRSPMPGAAYPRP 61
+ P G G G G GP G PGPP GPA G+ PG P P
Sbjct: 1289 AAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-P 1347
Query: 62 GMLPGSRMTPQGP--SMGPPGYGG 83
G P P GP GPPG G
Sbjct: 1348 G--PSGEAGPPGPPGKRGPPGAAG 1369
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQ 72
+G G GG G++ A G G PGP GP QG RPG G M +
Sbjct: 537 TGRPGPVGGPGSSGAKGESGDPGP---QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE 593
Query: 73 GPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+ G G+ G P + G + P P
Sbjct: 594 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGP 626
Score = 34.7 bits (78), Expect = 0.21
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----PGS 67
P G G G G G G GPP MGP GL P PG++ P
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1465
Query: 68 RMTPQGPSMGPPGYGGNPSVR 88
+G G PG G+P +
Sbjct: 1466 EQGEKG-DRGLPGTQGSPGAK 1485
Score = 34.3 bits (77), Expect = 0.28
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMG-PAP------------GQGLYRSPMPGA 56
+ P G G +G G GP G PG P G P P G G +
Sbjct: 453 MGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQ 512
Query: 57 AYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQ 112
+L +R+ +GP GP G G P G SG P PQ + VQ
Sbjct: 513 EAQAQAILQQARIALRGPP-GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQ 567
Score = 34.3 bits (77), Expect = 0.28
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----P 65
V P G G G G G G GPP +G G G P PG P
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP 1274
Query: 66 GSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
+G + GPPG G P + G D + P P
Sbjct: 1275 KGERGEKGEA-GPPGAAGPPGAK---GPPGDDGPKGNPGP 1310
Score = 33.5 bits (75), Expect = 0.48
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM 53
P G G G G A G G PGPP GP PG+ + P+
Sbjct: 1508 PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP-PGEVIQPLPI 1548
Score = 32.7 bits (73), Expect = 0.81
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA--AYPRP-GMLPG 66
+ P G G G G A G G PG P + G + +G P P YP P G+
Sbjct: 708 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSG 95
+ S G G G P + + G
Sbjct: 768 DGVRGLKGSKGEKGEDGFPGFKGDMGLKG 796
Score = 31.2 bits (69), Expect = 2.4
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML--PGSRMT 70
+G G G AG G G PGP G G P P PG+ PGS+
Sbjct: 1392 TGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGE 1451
Query: 71 PQGPSM----GPPGYGGNPSVR 88
P + GPPG G R
Sbjct: 1452 KGHPGLIGLIGPPGEQGEKGDR 1473
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G +GP G GP GP G P P G L +
Sbjct: 790 GDMGLKGDRGEVGQIGPRGEDGPE---GPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYP 846
Query: 74 PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP G G P + G +P P+
Sbjct: 847 GRQGPKGSTGFPGFPGANGEKGARGVAGKPGPR 879
Score = 30.4 bits (67), Expect = 4.0
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP--MPGAAYP-- 59
R + P G G G G G G PG GPA G+ + P +PG A P
Sbjct: 1062 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGV-QGPVGLPGPAGPAG 1120
Query: 60 ------------RPGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLA 92
PG + GPPG G P PG+A
Sbjct: 1121 SPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQG-PVGAPGIA 1164
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-----PGSR 68
G G G G+ G G PGPP GP G+ + GM G+R
Sbjct: 1129 GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR 1188
Query: 69 MTPQGPSMGPPGYGGNP 85
P P GP G G P
Sbjct: 1189 GFPGPP--GPIGLQGLP 1203
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 29/98 (29%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTP---------------------GPPVRMGPAPGQGL 48
V G GA+G G +GP G P GPP G +GL
Sbjct: 1416 VGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGL 1475
Query: 49 YRSP-MPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
+ PGA G +PG P GP +GPPG G P
Sbjct: 1476 PGTQGSPGA--KGDGGIPG----PAGP-LGPPGPPGLP 1506
Score = 29.6 bits (65), Expect = 6.9
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSR 68
+ P G G G G A GP G PGP + G G+ P PG P+ GS
Sbjct: 804 IGPRGEDGPEGPKGRA---GPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPK-----GST 855
Query: 69 MTPQGP----SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P P G G G P R +G SR P
Sbjct: 856 GFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP 896
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
G AGA G +G A A GP G PGPP GP PG GL M G+ P S P
Sbjct: 989 GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 1046
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
QGP G PG G+P V PGL
Sbjct: 1047 QGPP-GLPGLKGDPGV-PGL 1064
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
SV GG GG G G PGPP R GP PG SP+ G A P
Sbjct: 740 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 796
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+PG PQGP GPPG G P
Sbjct: 797 LQTVPG----PQGPP-GPPGRDGTP 816
Score = 37.4 bits (85), Expect = 0.033
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 18 ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
AS G G GP G PGPP GP PG +Y S + ++ P P LPG++ P GP
Sbjct: 1244 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 1298
Query: 75 ---SMGPPGYGG 83
+GPPG G
Sbjct: 1299 AKGEVGPPGPPG 1310
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A A G G+ G P GPA +G S + GA P P PG P
Sbjct: 963 PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 1011
Query: 72 QGPSMGPPGYG 82
GP GPPG G
Sbjct: 1012 PGPP-GPPGPG 1021
Score = 36.2 bits (82), Expect = 0.074
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 14 GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
G G GG G ++ GP G PGP G P P G+ + P P PG+ R
Sbjct: 1337 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 1396
Query: 70 TPQGPSMGPPG 80
P GP GPPG
Sbjct: 1397 GPPGPP-GPPG 1406
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 17 GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
G+ G A GP G PGPP G PG+ G+ S +PG A PG +PG
Sbjct: 888 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 945
Query: 71 PQGPSM----GPPGYGGNP 85
P P + GPPG G P
Sbjct: 946 PGFPGLPGPPGPPGREGPP 964
Score = 34.7 bits (78), Expect = 0.21
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
G G +G G+ GP G P P +GPA G L P P PG PG P
Sbjct: 764 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 822
Query: 72 QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
P GP G+ G P PG+ + G + P P
Sbjct: 823 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 871
Score = 34.3 bits (77), Expect = 0.28
Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
R G S G AG G G G G PGPP R GP APG
Sbjct: 922 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 981
Query: 46 QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+G +P P A G+ PG P GP GPPG G P PGL +G D
Sbjct: 982 KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 1033
Query: 104 AP 105
P
Sbjct: 1034 GP 1035
Score = 33.9 bits (76), Expect = 0.37
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
P G G G G ++ GP G PG P R GP GL P P PG
Sbjct: 910 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 969
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
+ + G G G P +SG+
Sbjct: 970 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 999
Score = 33.9 bits (76), Expect = 0.37
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 5 AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
AGF + SGG S A +A GP G PG P G GL + A PG
Sbjct: 1024 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 1080
Query: 64 -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
LPG PQGP G G G+P + G+ Q G+ P P
Sbjct: 1081 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 1126
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G GP G PG P +GP +G PG P PG PQG
Sbjct: 820 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 867
Query: 74 PSMGPPG 80
P GPPG
Sbjct: 868 PP-GPPG 873
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)
Query: 11 APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
+P GGA GA G G PGP R G Y+ + P RPGM L G
Sbjct: 1185 SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 1237
Query: 68 RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
+ P S+ GPPG G P PG + S + RP P
Sbjct: 1238 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 1284
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
P G G G G A G G PGPP + G
Sbjct: 1284 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1343
Query: 45 GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
G G + S +PG P P PG P+G S+ GPPG P PG+ G
Sbjct: 1344 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 1398
Query: 100 RKRPAP 105
P P
Sbjct: 1399 PGPPGP 1404
Score = 31.2 bits (69), Expect = 2.4
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)
Query: 12 PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
P G G+ G G G GP G PGP V + P P + P
Sbjct: 1094 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 1153
Query: 55 GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
G A P+ PG PGS +P G ++GP PG+ G P R
Sbjct: 1154 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 1213
Query: 89 PG 90
PG
Sbjct: 1214 PG 1215
Score = 30.4 bits (67), Expect = 4.0
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
G+ + G G G GP G PGPP GP G +R + +
Sbjct: 1363 GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1419
Query: 58 YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
P P PG P GP GPPG G + VR Q+ + Q + P I +Q+
Sbjct: 1420 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1471
Query: 116 VQNRNHNAKKKKMADKILP 134
+ R N +K + P
Sbjct: 1472 LYVRVQNGFRKVQLEARTP 1490
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
G AGA G +G A A GP G PGPP GP PG GL M G+ P S P
Sbjct: 574 GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 631
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
QGP G PG G+P V PGL
Sbjct: 632 QGPP-GLPGLKGDPGV-PGL 649
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
SV GG GG G G PGPP R GP PG SP+ G A P
Sbjct: 325 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 381
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+PG PQGP GPPG G P
Sbjct: 382 LQTVPG----PQGPP-GPPGRDGTP 401
Score = 37.4 bits (85), Expect = 0.033
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 18 ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
AS G G GP G PGPP GP PG +Y S + ++ P P LPG++ P GP
Sbjct: 829 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 883
Query: 75 ---SMGPPGYGG 83
+GPPG G
Sbjct: 884 AKGEVGPPGPPG 895
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A A G G+ G P GPA +G S + GA P P PG P
Sbjct: 548 PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 596
Query: 72 QGPSMGPPGYG 82
GP GPPG G
Sbjct: 597 PGPP-GPPGPG 606
Score = 36.2 bits (82), Expect = 0.074
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 14 GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
G G GG G ++ GP G PGP G P P G+ + P P PG+ R
Sbjct: 922 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 981
Query: 70 TPQGPSMGPPG 80
P GP GPPG
Sbjct: 982 GPPGPP-GPPG 991
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 17 GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
G+ G A GP G PGPP G PG+ G+ S +PG A PG +PG
Sbjct: 473 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 530
Query: 71 PQGPSM----GPPGYGGNP 85
P P + GPPG G P
Sbjct: 531 PGFPGLPGPPGPPGREGPP 549
Score = 34.7 bits (78), Expect = 0.21
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
G G +G G+ GP G P P +GPA G L P P PG PG P
Sbjct: 349 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 407
Query: 72 QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
P GP G+ G P PG+ + G + P P
Sbjct: 408 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 456
Score = 34.3 bits (77), Expect = 0.28
Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
R G S G AG G G G G PGPP R GP APG
Sbjct: 507 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 566
Query: 46 QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+G +P P A G+ PG P GP GPPG G P PGL +G D
Sbjct: 567 KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 618
Query: 104 AP 105
P
Sbjct: 619 GP 620
Score = 33.9 bits (76), Expect = 0.37
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
P G G G G ++ GP G PG P R GP GL P P PG
Sbjct: 495 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 554
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
+ + G G G P +SG+
Sbjct: 555 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 584
Score = 33.9 bits (76), Expect = 0.37
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 5 AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
AGF + SGG S A +A GP G PG P G GL + A PG
Sbjct: 609 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 665
Query: 64 -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
LPG PQGP G G G+P + G+ Q G+ P P
Sbjct: 666 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 711
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G GP G PG P +GP +G PG P PG PQG
Sbjct: 405 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 452
Query: 74 PSMGPPG 80
P GPPG
Sbjct: 453 PP-GPPG 458
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)
Query: 11 APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
+P GGA GA G G PGP R G Y+ + P RPGM L G
Sbjct: 770 SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 822
Query: 68 RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
+ P S+ GPPG G P PG + S + RP P
Sbjct: 823 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 869
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
P G G G G A G G PGPP + G
Sbjct: 869 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 928
Query: 45 GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
G G + S +PG P P PG P+G S+ GPPG P PG+ G
Sbjct: 929 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 983
Query: 100 RKRPAP 105
P P
Sbjct: 984 PGPPGP 989
Score = 31.2 bits (69), Expect = 2.4
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)
Query: 12 PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
P G G+ G G G GP G PGP V + P P + P
Sbjct: 679 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 738
Query: 55 GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
G A P+ PG PGS +P G ++GP PG+ G P R
Sbjct: 739 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 798
Query: 89 PG 90
PG
Sbjct: 799 PG 800
Score = 30.4 bits (67), Expect = 4.0
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
G+ + G G G GP G PGPP GP G +R + +
Sbjct: 948 GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1004
Query: 58 YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
P P PG P GP GPPG G + VR Q+ + Q + P I +Q+
Sbjct: 1005 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1056
Query: 116 VQNRNHNAKKKKMADKILP 134
+ R N +K + P
Sbjct: 1057 LYVRVQNGFRKVQLEARTP 1075
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYR--SPMPGAAYPRPGMLPGSRMTP 71
G AGA G +G A A GP G PGPP GP PG GL M G+ P S P
Sbjct: 754 GPAGARGESGLAGAPGPAGPPGPPGPPGP-PGPGLPAGFDDMEGSGGPF-WSTARSADGP 811
Query: 72 QGPSMGPPGYGGNPSVRPGL 91
QGP G PG G+P V PGL
Sbjct: 812 QGPP-GLPGLKGDPGV-PGL 829
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/85 (40%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGP--------APGQGLYRSPMPGAAYPR 60
SV GG GG G G PGPP R GP PG SP+ G A P
Sbjct: 505 SVRTPGGRVKEGGLKGQK--GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPL-GPAGPA 561
Query: 61 PGMLPGSRMTPQGPSMGPPGYGGNP 85
+PG PQGP GPPG G P
Sbjct: 562 LQTVPG----PQGPP-GPPGRDGTP 581
Score = 37.4 bits (85), Expect = 0.033
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 18 ASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPM-PGAAYPRPGMLPGSRMTPQGP-- 74
AS G G GP G PGPP GP PG +Y S + ++ P P LPG++ P GP
Sbjct: 1009 ASLGFGMRGMPGPPGPPGPP---GP-PGTPVYDSNVFAESSRPGPPGLPGNQ-GPPGPKG 1063
Query: 75 ---SMGPPGYGG 83
+GPPG G
Sbjct: 1064 AKGEVGPPGPPG 1075
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G A A G G+ G P GPA +G S + GA P P PG P
Sbjct: 728 PPGRTGQKGSLGEAGAPGHKGSKGAP---GPAGARG--ESGLAGA--PGPAGPPG----P 776
Query: 72 QGPSMGPPGYG 82
GP GPPG G
Sbjct: 777 PGPP-GPPGPG 786
Score = 36.2 bits (82), Expect = 0.074
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 14 GGAGASGGAG--AAAALGPGGTPGPPVRMG-PAP-GQGLYRSPMPGAAYPRPGMLPGSRM 69
G G GG G ++ GP G PGP G P P G+ + P P PG+ R
Sbjct: 1102 GERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ 1161
Query: 70 TPQGPSMGPPG 80
P GP GPPG
Sbjct: 1162 GPPGPP-GPPG 1171
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 17 GASGGAGAAAALGPGGTPGPPVRMG--PAPGQ----GLYRSPMPGAAYPRPGMLPGSRMT 70
G+ G A GP G PGPP G PG+ G+ S +PG A PG +PG
Sbjct: 653 GSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG-VPGREGP 710
Query: 71 PQGPSM----GPPGYGGNP 85
P P + GPPG G P
Sbjct: 711 PGFPGLPGPPGPPGREGPP 729
Score = 34.7 bits (78), Expect = 0.21
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM--LPGSRMTP 71
G G +G G+ GP G P P +GPA G L P P PG PG P
Sbjct: 529 GPPGRAGPPGSPCLPGPPGLPCPVSPLGPA-GPALQTVPGPQGPPGPPGRDGTPGRDGEP 587
Query: 72 QGP-------SMGPPGYGGNP--------SVRPGLAQSGMDQSRKRPAP 105
P GP G+ G P PG+ + G + P P
Sbjct: 588 GDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGP 636
Score = 34.3 bits (77), Expect = 0.28
Identities = 42/122 (34%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 4 RAGFQSVAPSGGAGASGGAGAAAALGPGG---TPGPPVRMGP--------------APG- 45
R G S G AG G G G G PGPP R GP APG
Sbjct: 687 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGH 746
Query: 46 QGLYRSPMPGAAYPRPGM--LPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
+G +P P A G+ PG P GP GPPG G P PGL +G D
Sbjct: 747 KGSKGAPGPAGARGESGLAGAPG----PAGPP-GPPGPPGPPG--PGL-PAGFDDMEGSG 798
Query: 104 AP 105
P
Sbjct: 799 GP 800
Score = 33.9 bits (76), Expect = 0.37
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 12 PSGGAGASG-----GAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
P G G G G ++ GP G PG P R GP GL P P PG
Sbjct: 675 PPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRTGQ 734
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGM 96
+ + G G G P +SG+
Sbjct: 735 KGSLGEAGAPGHKGSKGAPGPAGARGESGL 764
Score = 33.9 bits (76), Expect = 0.37
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 5 AGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGM- 63
AGF + SGG S A +A GP G PG P G GL + A PG
Sbjct: 789 AGFDDMEGSGGPFWS---TARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP 845
Query: 64 -LPGSR--MTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
LPG PQGP G G G+P + G+ Q G+ P P
Sbjct: 846 GLPGREGIAGPQGPKGDRGSRGEKGDPG-KDGVGQPGLPGPPGPPGP 891
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G GP G PG P +GP +G PG P PG PQG
Sbjct: 585 GEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKG-----DPGVGERGP---PG----PQG 632
Query: 74 PSMGPPG 80
P GPPG
Sbjct: 633 PP-GPPG 638
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 21/108 (19%)
Query: 11 APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-RPGM--LPGS 67
+P GGA GA G G PGP R G Y+ + P RPGM L G
Sbjct: 950 SPDGGALGPAQKGAKGEPGFRGPPGPYGRPG-------YKGEIGFPGRPGRPGMNGLKGE 1002
Query: 68 RMTPQGPSM--------GPPGYGGNPSVRPG--LAQSGMDQSRKRPAP 105
+ P S+ GPPG G P PG + S + RP P
Sbjct: 1003 KGEPGDASLGFGMRGMPGPPGPPGPPG-PPGTPVYDSNVFAESSRPGP 1049
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 37/126 (29%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRM---------------------------GPAP 44
P G G G G A G G PGPP + G
Sbjct: 1049 PPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPG 1108
Query: 45 GQGLYRSPMPG-AAYPRPGMLPGSRMTPQGPSM----GPPGYGGNPSVRPGLAQSGMDQS 99
G G + S +PG P P PG P+G S+ GPPG P PG+ G
Sbjct: 1109 GGGFFGSSLPGPPGPPGPRGYPGI-PGPKGESIRGQPGPPG----PQGPPGIGYEGRQGP 1163
Query: 100 RKRPAP 105
P P
Sbjct: 1164 PGPPGP 1169
Score = 31.2 bits (69), Expect = 2.4
Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 43/122 (35%)
Query: 12 PSGGAGASG--------GAGAAAALGPGGTPGPPVRMG---------PAPGQGLYRSPMP 54
P G G+ G G G GP G PGP V + P P + P
Sbjct: 859 PKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFP 918
Query: 55 GAAYPR-----------PGML-----PGSRMTPQGPSMGP--------PGYGGNPSV--R 88
G A P+ PG PGS +P G ++GP PG+ G P R
Sbjct: 919 GPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR 978
Query: 89 PG 90
PG
Sbjct: 979 PG 980
Score = 30.4 bits (67), Expect = 4.0
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 21/139 (15%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGT--------PGPPVRMGPAPGQGLYRSPMPGAA 57
G+ + G G G GP G PGPP GP G +R + +
Sbjct: 1128 GYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTI---S 1184
Query: 58 YPRPGMLPGSRMTPQGPSMGPPG-YGGNPSVRP-GLAQSGMDQSRKRPAPQQIQQVQQQA 115
P P PG P GP GPPG G + VR Q+ + Q + P I +Q+
Sbjct: 1185 VPGP---PG----PPGPP-GPPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEE 1236
Query: 116 VQNRNHNAKKKKMADKILP 134
+ R N +K + P
Sbjct: 1237 LYVRVQNGFRKVQLEARTP 1255
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/100 (38%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 8 QSVAPSG-GAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
Q + P G G A+ A A A++ T PP R GP P G +P PG P PGM P
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GAPPPGMMGPPPGMRP- 197
Query: 67 SRMTPQGPSMG-PPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P GP MG PPG G GM RP P
Sbjct: 198 ----PMGPPMGIPPGRG---------TPMGMPPPGMRPPP 224
Score = 38.5 bits (88), Expect = 0.015
Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPG--GTPGPPVRMGPAPGQGLYRSPMPGAAYPR--P 61
G +VA + A + AGA PG G P P R P PG P PG P P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM---MGPPPGMRPPMGPP 202
Query: 62 GMLPGSRMTPQG---PSMGPPGYGGNPSVRPGL 91
+P R TP G P M PP G PG+
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGM 235
Score = 34.7 bits (78), Expect = 0.21
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 27/88 (30%)
Query: 16 AGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-- 73
AGA+GG G A G G G P+ PA G P+ G P + MTPQG
Sbjct: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG----PVRGVGGPSQQV-----MTPQGRG 148
Query: 74 ----------------PSMGPPGYGGNP 85
P+ PPG GG P
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPP 176
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/100 (38%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 8 QSVAPSG-GAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPG 66
Q + P G G A+ A A A++ T PP R GP P G +P PG P PGM P
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR-GAPPPGMMGPPPGMRP- 197
Query: 67 SRMTPQGPSMG-PPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P GP MG PPG G GM RP P
Sbjct: 198 ----PMGPPMGIPPGRG---------TPMGMPPPGMRPPP 224
Score = 34.7 bits (78), Expect = 0.21
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 27/88 (30%)
Query: 16 AGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-- 73
AGA+GG G A G G G P+ PA G P+ G P + MTPQG
Sbjct: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG----PVRGVGGPSQQV-----MTPQGRG 148
Query: 74 ----------------PSMGPPGYGGNP 85
P+ PPG GG P
Sbjct: 149 TVAAAAAAATASIAGAPTQYPPGRGGPP 176
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 48.5 bits (114), Expect = 1e-05
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 2 AARAGFQSVAPSGGAGASGGA--GAAAALGPGGTPGPPVRMGP-APGQGLYRSPMPGAAY 58
AA A + G G +GG+ G+ A P G G P +GP A G+ R P A
Sbjct: 11 AAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSG-PAEVGPGAVGERTPRKKEPPRAS 69
Query: 59 PRPGML--PGSRMTPQGPSMGPPGYGGNPSVRPGLAQS--GMDQSRKRPAPQQIQQVQQQ 114
P G+ PGS GP++ P G + G+A++ G SR++ A + +++ +
Sbjct: 70 PPGGLAEPPGSAGPQAGPTVVP---GSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126
Query: 115 ----------AVQNRNHNAKKKKM----ADKILPQRIRELVPESQAYMDLLAFERKL--D 158
+ + RN A+K+K + P+ E PE + ++ AF+ +L D
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPHD 186
Query: 159 QTIMRKRLDIQEALKRPIKQKRKLRIFISN 188
+ ++ + + P +Q +K+ +FI N
Sbjct: 187 RMTSQEAACFPDIISGP-QQTQKVFLFIRN 215
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 48.1 bits (113), Expect = 2e-05
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 10 VAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML----- 64
V P G G G G+ GP G PGP +GP +G SP P +PG+
Sbjct: 513 VGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGS 572
Query: 65 PGSR--MTPQGPS--MGPPGYGGNP 85
PG R M P+G GPPG G P
Sbjct: 573 PGQRGAMGPKGEPGIQGPPGLPGPP 597
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/95 (35%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPA-----------PG-QGLYRSPMPGAAYP 59
P GG G G G+ LGP G G P GP PG +G S G
Sbjct: 476 PVGGRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRG 535
Query: 60 RPGMLPGSRMTPQGPSMGPPGYGG--NPSVRPGLA 92
+PG P + P GP GPPG G P +PG+A
Sbjct: 536 QPG--PKGDIGPPGPE-GPPGSPGPSGPQGKPGIA 567
Score = 36.2 bits (82), Expect = 0.074
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG 62
++ F + P G G G G GP G+PGP GP G+ + G+ R
Sbjct: 524 SKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGP---SGPQGKPGI--AGKTGSPGQRGA 578
Query: 63 MLPGSRMTPQGPS--MGPPGYGGNPS 86
M P QGP GPPG G+ S
Sbjct: 579 MGPKGEPGIQGPPGLPGPPGPPGSQS 604
Score = 32.7 bits (73), Expect = 0.81
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G G G +G G G P +GP QG PG A P G R
Sbjct: 461 PPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQG--PQGQPGEAGP-----VGER--- 510
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
GP G G P ++ G R +P P+
Sbjct: 511 -----GPVGPRGFPGLKGSKGSFGTGGPRGQPGPK 540
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/92 (36%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G AGA G AG GP G PGP +G +G S P A PG R+ P G
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPG--AAGRVGPPG 887
Query: 74 PS--MGPPGYGGNPSVRPGLAQSGMDQSRKRP 103
PS GPPG G G G RP
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRP 919
Score = 47.8 bits (112), Expect = 2e-05
Identities = 39/103 (37%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 6 GFQSV-APSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML 64
GF + P G G+ G G + A GP G GPP G GL + +PG P PG
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGL--NGLPGPIGP-PG-- 1166
Query: 65 PGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQ 107
P R GP +GPPG G P PG +G D S PQ+
Sbjct: 1167 PRGRTGDAGP-VGPPGPPGPPG-PPGPPSAGFDFSFLPQPPQE 1207
Score = 47.4 bits (111), Expect = 3e-05
Identities = 42/112 (37%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPP---VRMGPAPGQGLYRSPMPGAAYPRPGM-- 63
+V G AG G G+ G G PGPP GPA G P A PG+
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 64 ---LPGSR--MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRK-RPAPQQIQ 109
PG+R PQGP GPPG GN S PG S D K P P +Q
Sbjct: 408 APGFPGARGPSGPQGPG-GPPGPKGN-SGEPGAPGSKGDTGAKGEPGPVGVQ 457
Score = 46.6 bits (109), Expect = 5e-05
Identities = 38/103 (36%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 2 AARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRP 61
A R G V P G G +G G+ A GP G PG P G A +G+ P P
Sbjct: 916 AGRPG--EVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFP 973
Query: 62 GMLPGSRMTP--QGPS-----MGPPGYGGNPSVRPGLAQSGMD 97
G LPG P QGPS GPPG G P + +SG +
Sbjct: 974 G-LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGRE 1015
Score = 44.3 bits (103), Expect = 3e-04
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGA-AYPRPGMLPGSR-- 68
PSG G G +GA+ GP G GPP GP PG+ R PGA P PG++
Sbjct: 978 PSGEPGKQGPSGASGERGPPGPMGPPGLAGP-PGES-GREGAPGAEGSPGRDGSPGAKGD 1035
Query: 69 MTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
GP+ GPPG G P + +G R P
Sbjct: 1036 RGETGPA-GPPGAPGAPGAPGPVGPAGKSGDRGETGP 1071
Score = 42.7 bits (99), Expect = 8e-04
Identities = 36/106 (33%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 3 ARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPG 62
A+ S P G G G AG GP G GPP GPA + G PR
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE--------GGKGPRGE 912
Query: 63 MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQI 108
P R GP GPPG G PG G + P PQ I
Sbjct: 913 TGPAGRPGEVGPP-GPPGPAGEKG-SPG--ADGPAGAPGTPGPQGI 954
Score = 42.7 bits (99), Expect = 8e-04
Identities = 38/104 (36%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTP---GPPVRMGPAPGQGLYRSPMPGAA--YPRPGMLPG 66
P G AG GG G GP G P GPP GPA +G + P A P P + G
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAG 956
Query: 67 SR----MTPQGPSMGPPGYGGNPSVRPG-LAQSGMDQSRKRPAP 105
R + Q G PG G PS PG SG R P P
Sbjct: 957 QRGVVGLPGQRGERGFPGLPG-PSGEPGKQGPSGASGERGPPGP 999
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPA--PGQGLYRSPMPGAAYPR-------PGML 64
G G G AG G G PGPP +GPA G+ + P PG A P P
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP-PGPAGPAGERGEQGPAGS 639
Query: 65 PGSRMTPQGPSMGPPGYGGNP 85
PG + P GP+ GPPG G P
Sbjct: 640 PGFQGLP-GPA-GPPGEAGKP 658
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G AG G GA GP G PGPP G +G G A P+ P
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF--PGADGVAGPKGPAGERGSPGP 516
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
GP G PG G P G+ S P P
Sbjct: 517 AGPK-GSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
GFQ G G G GA+ +GP G PGPP + G G +PG P
Sbjct: 200 GFQ-----GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG------------KPGR-P 241
Query: 66 GSRMTPQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
G R P GP + G PG G P ++ SG+D ++ P
Sbjct: 242 GER-GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 282
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 9 SVAPSGGAGASGGAGAAAALG-PG--GTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
+ P+G GA G GA A G PG G PG P GP+ QG P P PG P
Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG-AP 439
Query: 66 GSR-----MTPQGP--SMGPPGYGGNPSVRPGLAQSG 95
GS+ GP GPPG G R + G
Sbjct: 440 GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476
Score = 39.7 bits (91), Expect = 0.007
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPP------VRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
P+G G G GAA GP G GPP G A QG S P PG P
Sbjct: 318 PAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG--P 375
Query: 66 GSRMTPQGPSMGPPGYGGNPSVR-----PGLAQS-GMDQSRKRPAPQ 106
GP+ G PG G P + PG+A + G +R PQ
Sbjct: 376 PGPAGAAGPA-GNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ 421
Score = 39.7 bits (91), Expect = 0.007
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G G G PGPP G G+ P P A PG G R P
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGK-AGERGVPGP 603
Query: 74 P-SMGPPGYGGNPSVR--PGLAQSGMDQSRKRPA 104
P ++GP G G + PG A ++ + PA
Sbjct: 604 PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637
Score = 39.7 bits (91), Expect = 0.007
Identities = 33/99 (33%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P G G+ G G GP G PGP APG P A PG R P
Sbjct: 750 PKGADGSPGKDGVRGLTGPIGPPGP----AGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805
Query: 72 QGPS----MGPPGYGGNPSVR--PGLAQSGMDQSRKRPA 104
P GPPG G P + PG A + D PA
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844
Score = 39.3 bits (90), Expect = 0.009
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 13 SGGAGASGGAGAAAALGPGGTP---GPPVRMGP--APGQ-GLYRSPMPGAAYPRPGMLPG 66
SG GA G AG A G G+P G P +MGP PG+ G +P P A G
Sbjct: 271 SGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGA 330
Query: 67 SRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQ 109
+ P GP+ GP G G P ++G R PQ ++
Sbjct: 331 A--GPPGPT-GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR 370
Score = 38.5 bits (88), Expect = 0.015
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMT 70
PSG AG +G GA G G PGP GP G + PG A + P
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 71 PQGPSMGPPGYGGNPSVRPGLAQSG 95
P GP GP G G P + +G
Sbjct: 846 PAGPP-GPIGNVGAPGAKGARGSAG 869
Score = 37.7 bits (86), Expect = 0.025
Identities = 31/79 (39%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 6 GFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLP 65
G +S G G G GP G GPP R G PGQ PG P PG
Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDG-IPGQ-------PGLPGP-PG--- 145
Query: 66 GSRMTPQGPSMGPPGYGGN 84
P GP GPPG GGN
Sbjct: 146 -----PPGPP-GPPGLGGN 158
Score = 37.0 bits (84), Expect = 0.043
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGP--APGQGLYRSPMPGAAYPRPGMLPGSRM 69
P G G +G G G G PGPP GP PG G +P Y S
Sbjct: 119 PRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVP 178
Query: 70 TPQGPSMGPPGYGGNPSVRPG 90
P GPS GP G G P PG
Sbjct: 179 GPMGPS-GPRGLPGPPGA-PG 197
Score = 37.0 bits (84), Expect = 0.043
Identities = 29/74 (39%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G GA G AGA G G GPP GPA G PGA + PQG
Sbjct: 311 GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG-----FPGAVGAK------GEAGPQG 359
Query: 74 P--SMGPPGYGGNP 85
P S GP G G P
Sbjct: 360 PRGSEGPQGVRGEP 373
Score = 35.8 bits (81), Expect = 0.096
Identities = 31/98 (31%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQ------------------------G 47
P G AG SG G GP G GP GPA Q G
Sbjct: 1056 PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Query: 48 LYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGGNP 85
L P P + G P P GP GPPG G P
Sbjct: 1116 LQGPPGPPGSPGEQG--PSGASGPAGP-RGPPGSAGAP 1150
Score = 35.0 bits (79), Expect = 0.16
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 13 SGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSP-MPGAAYPRPGMLPGSRMTP 71
+GG G G + G G PG P GP QG P PGA+ P M P
Sbjct: 172 TGGISVPGPMGPSGPRGLPGPPGAP---GPQGFQGPPGEPGEPGASGP---------MGP 219
Query: 72 QGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
+GP GPPG G+ + G R P PQ
Sbjct: 220 RGPP-GPPGKNGDDG---EAGKPGRPGERGPPGPQ 250
Score = 34.7 bits (78), Expect = 0.21
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPG-QGLYRSPMPGAAYPRPGMLPGSRMT 70
P+G GA+G G A G G PG P G APG QG MPG LPG
Sbjct: 693 PAGPRGANGAPGNDGAKGDAGAPGAPGSQG-APGLQG-----MPGER--GAAGLPG---- 740
Query: 71 PQGP--SMGPPGYGGNP 85
P+G GP G G+P
Sbjct: 741 PKGDRGDAGPKGADGSP 757
Score = 34.3 bits (77), Expect = 0.28
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR--MTP 71
G G +G G GP G PG + G G +P P A G PG R P
Sbjct: 632 GEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG-FPGERGVQGP 690
Query: 72 QGPSMGPPGYGGNP 85
GP+ GP G G P
Sbjct: 691 PGPA-GPRGANGAP 703
Score = 33.9 bits (76), Expect = 0.37
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGML-PGSRMT 70
P+G G+ G AG + G G PG G G SP P PG R
Sbjct: 507 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG 566
Query: 71 PQGP--SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P GP + G G G P + + G R P P
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603
Score = 33.9 bits (76), Expect = 0.37
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
+V P+G G +G G GP G G GPA G P P A P PG +
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERG---EQGPAGSPGFQGLPGP-AGPPGEAGKPGEQ 661
Query: 69 MTPQGPSMGPPGYGG 83
P +G PG G
Sbjct: 662 GVP--GDLGAPGPSG 674
Score = 33.5 bits (75), Expect = 0.48
Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 2 AARAGFQSVAPSGGA-GASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR 60
A + G Q V GA G SG G G G GPP GPA +G +P A
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP---GPAGPRGANGAPGNDGA--- 708
Query: 61 PGMLPGSRMTPQGP-SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 106
G P P S G PG G P R G R P+
Sbjct: 709 ----KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK 751
Score = 32.3 bits (72), Expect = 1.1
Identities = 28/93 (30%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 14 GGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG 73
G G G G GP G PG P G G + P P G R P
Sbjct: 133 GIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGP 192
Query: 74 P-SMGPPGYGGNPSVRPGLAQSGMDQSRKRPAP 105
P + GP G+ G P SG R P P
Sbjct: 193 PGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGP 225
Score = 32.3 bits (72), Expect = 1.1
Identities = 30/80 (37%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 12 PSGGAGASGGAGAAAALGP---GGTPGPPVRMGPAPGQGLYRSP----MPGAAYPRPGML 64
P G G G AG G G G GPA +G SP PG PR L
Sbjct: 249 PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG--L 306
Query: 65 PGSRMTPQGPSMGPPGYGGN 84
PG R P P GP G GN
Sbjct: 307 PGERGRPGAP--GPAGARGN 324
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 20/94 (21%)
Query: 14 GGAGASGGAGAAAALG----PG-----GTPGPPVRMGPA--------PGQGLYRSPMPGA 56
G AGA G G+ A G PG G PGP G A PG+ R
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPI 769
Query: 57 AYPRPGMLPGSR--MTPQGPSMGPPGYGGNPSVR 88
P P PG + P GP+ GP G G P R
Sbjct: 770 GPPGPAGAPGDKGESGPSGPA-GPTGARGAPGDR 802
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
P+G GA G GA +GP G G GPA G A P + P
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA-----------GPAGPVGPVGARGPAGP 1089
Query: 72 QGP--SMGPPGYGGNPSVRPGLAQSGM 96
QGP G G G+ ++ SG+
Sbjct: 1090 QGPRGDKGETGEQGDRGIKGHRGFSGL 1116
Score = 30.8 bits (68), Expect = 3.1
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 9 SVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR 68
S G G +G AG A G G PGP +GPA G G A P + P
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGAPGP---VGPAGKSG--DRGETGPAGPAGPVGPVGA 1083
Query: 69 MTPQGPSMGPPGYGG 83
P GP GP G G
Sbjct: 1084 RGPAGP-QGPRGDKG 1097
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 33 TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
TP PP+ R GP+PG G P PGA P PG PGS + GPS GPP G P+
Sbjct: 3 TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 87 VRP-GLAQSGMDQSRK 101
P G Q M Q K
Sbjct: 59 QGPGGYPQDNMHQMHK 74
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 24 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
+ +A GPG PGP GP PG G P P Y RP + G M P GPS PPG G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Query: 84 NPSVRP 89
P P
Sbjct: 275 QPPGGP 280
Score = 35.8 bits (81), Expect = 0.096
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
PG P P +GP+PG P PG+A+ G PG P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 35 GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
G +R G G G SPM + P L GS + GPS GP G GG P
Sbjct: 95 GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153
Query: 87 VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
G + Q + P P QN+ H + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 33 TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
TP PP+ R GP+PG G P PGA P PG PGS + GPS GPP G P+
Sbjct: 3 TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 87 VRP-GLAQSGMDQSRK 101
P G Q M Q K
Sbjct: 59 QGPGGYPQDNMHQMHK 74
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 24 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
+ +A GPG PGP GP PG G P P Y RP + G M P GPS PPG G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Query: 84 NPSVRP 89
P P
Sbjct: 275 QPPGGP 280
Score = 35.8 bits (81), Expect = 0.096
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
PG P P +GP+PG P PG+A+ G PG P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 35 GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
G +R G G G SPM + P L GS + GPS GP G GG P
Sbjct: 95 GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153
Query: 87 VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
G + Q + P P QN+ H + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 47.8 bits (112), Expect = 2e-05
Identities = 34/76 (44%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 33 TPGPPV----RMGPAPGQGLYRSPMPGAAY-PRPGMLPGSRMTPQGPSMGPPGYGGN-PS 86
TP PP+ R GP+PG G P PGA P PG PGS + GPS GPP G P+
Sbjct: 3 TPDPPLGGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPT 58
Query: 87 VRP-GLAQSGMDQSRK 101
P G Q M Q K
Sbjct: 59 QGPGGYPQDNMHQMHK 74
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 24 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG 83
+ +A GPG PGP GP PG G P P Y RP + G M P GPS PPG G
Sbjct: 224 SVSATGPGPGPGP----GPGPGPG----PAP-PNYSRPHGMGGPNMPPPGPSGVPPGMPG 274
Query: 84 NPSVRP 89
P P
Sbjct: 275 QPPGGP 280
Score = 35.8 bits (81), Expect = 0.096
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 30 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQG-PSMGPPGY 81
PG P P +GP+PG P PG+A+ G PG P+ GP GY
Sbjct: 18 PGPGPSPGAMLGPSPG------PSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 19/107 (17%)
Query: 35 GPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSR-----MTPQGPSMGP---PGYGGNPS 86
G +R G G G SPM + P L GS + GPS GP G GG P
Sbjct: 95 GMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP- 153
Query: 87 VRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKIL 133
G + Q + P P QN+ H + + MA K+L
Sbjct: 154 -LDGADPQALGQQNRGPTPFN---------QNQLHQLRAQIMAYKML 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,720,719
Number of Sequences: 37866
Number of extensions: 1328546
Number of successful extensions: 21044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 708
Number of HSP's that attempted gapping in prelim test: 8901
Number of HSP's gapped (non-prelim): 6522
length of query: 515
length of database: 18,247,518
effective HSP length: 107
effective length of query: 408
effective length of database: 14,195,856
effective search space: 5791909248
effective search space used: 5791909248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.