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Search of human proteins with 4826686
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo
sapiens]
(740 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens] 1519 0.0
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 137 5e-32
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 137 5e-32
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 137 5e-32
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 136 8e-32
gi|13129006 nucleolar protein GU2 [Homo sapiens] 136 8e-32
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 134 3e-31
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 134 3e-31
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 132 2e-30
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 131 2e-30
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 128 2e-29
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 127 4e-29
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 127 5e-29
gi|7661920 eukaryotic translation initiation factor 4A, isoform ... 126 6e-29
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 124 2e-28
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 123 7e-28
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 123 7e-28
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 123 7e-28
gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sap... 120 5e-27
gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo sapi... 119 1e-26
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 115 1e-25
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... 115 1e-25
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 115 1e-25
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 114 4e-25
gi|62241022 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [... 113 6e-25
gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H... 113 6e-25
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 112 9e-25
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 112 9e-25
gi|62241024 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [... 112 1e-24
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 112 2e-24
>gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens]
Length = 740
Score = 1519 bits (3933), Expect = 0.0
Identities = 740/740 (100%), Positives = 740/740 (100%)
Query: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH 120
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH 120
Query: 121 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD 180
GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
Sbjct: 121 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD 180
Query: 181 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF 240
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
Sbjct: 181 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF 240
Query: 241 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE 300
NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
Sbjct: 241 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE 300
Query: 301 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN 360
QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
Sbjct: 301 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN 360
Query: 361 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE 420
LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
Sbjct: 361 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE 420
Query: 421 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN 480
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
Sbjct: 421 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN 480
Query: 481 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF 540
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
Sbjct: 481 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF 540
Query: 541 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV 600
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
Sbjct: 541 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV 600
Query: 601 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS 660
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
Sbjct: 601 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS 660
Query: 661 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK 720
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
Sbjct: 661 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK 720
Query: 721 EAQTSFLHLGYLPNQLFRTF 740
EAQTSFLHLGYLPNQLFRTF
Sbjct: 721 EAQTSFLHLGYLPNQLFRTF 740
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 137 bits (344), Expect = 5e-32
Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 58/333 (17%)
Query: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
P +L++ P+RELA Q ++F ++R ++ GG Q+ LE G ++V T
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 323
Query: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ-VIV 405
PGRL D++ GK+ L ++LVLDEAD +L G+ I R+ + Q T K ++ ++
Sbjct: 324 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRI---VEQDTMPPKGVRHTMM 380
Query: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
SAT FP + + D + + + V V ++ + +++
Sbjct: 381 FSAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV------ 419
Query: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQ 524
+W E K + + + D ++F TK D+LE
Sbjct: 420 ------------------VWVEESD--KRSFLLDLLNATGKDSLTLVFVETKKGADSLED 459
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
+ +G ++C +HGDR +R++ L +F+ G L+ T VAARG+DI V
Sbjct: 460 FLYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS 617
+VIN LP + + YVHRIGR GR +GLA S
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 543
Score = 46.6 bits (109), Expect = 8e-05
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
+FS++ + I +E + PT +Q +IP+I D++ A+TGSGKT AF +P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query: 63 IVY-----ETLKDQQE-GKKGK 78
+Y E L+ +E G+ G+
Sbjct: 241 QIYSDGPGEALRAMKENGRYGR 262
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 137 bits (344), Expect = 5e-32
Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 58/333 (17%)
Query: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
P +L++ P+RELA Q ++F ++R ++ GG Q+ LE G ++V T
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 321
Query: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ-VIV 405
PGRL D++ GK+ L ++LVLDEAD +L G+ I R+ + Q T K ++ ++
Sbjct: 322 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRI---VEQDTMPPKGVRHTMM 378
Query: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
SAT FP + + D + + + V V ++ + +++
Sbjct: 379 FSAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV------ 417
Query: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQ 524
+W E + K + + + D ++F TK D+LE
Sbjct: 418 ------------------VWVEDLD--KRSFLLDILGATGSDSLTLVFVETKKGADSLED 457
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
+ +G ++C +HGDR +R++ L +F+ G L+ T VAARG+DI V
Sbjct: 458 FLYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 508
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS 617
+VIN LP + + YVHRIGR GR +GLA S
Sbjct: 509 RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 541
Score = 50.1 bits (118), Expect = 8e-06
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI 63
FS++ + I +E + PT +Q +IP+I G D++ A+TGSGKT AF +P++
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ 239
Query: 64 VY-----ETLKDQQE-GKKGK 78
+Y E LK +E G+ G+
Sbjct: 240 IYTDGPGEALKAVKENGRYGR 260
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 137 bits (344), Expect = 5e-32
Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 58/333 (17%)
Query: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
P +L++ P+RELA Q ++F ++R ++ GG Q+ LE G ++V T
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 321
Query: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ-VIV 405
PGRL D++ GK+ L ++LVLDEAD +L G+ I R+ + Q T K ++ ++
Sbjct: 322 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRI---VEQDTMPPKGVRHTMM 378
Query: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
SAT FP + + D + + + V V ++ + +++
Sbjct: 379 FSAT---------------FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV------ 417
Query: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ-AIIFCRTKIDCDNLEQ 524
+W E + K + + + D ++F TK D+LE
Sbjct: 418 ------------------VWVEDLD--KRSFLLDILGATGSDSLTLVFVETKKGADSLED 457
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
+ +G ++C +HGDR +R++ L +F+ G L+ T VAARG+DI V
Sbjct: 458 FLYHEG---------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 508
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAIS 617
+VIN LP + + YVHRIGR GR +GLA S
Sbjct: 509 RHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 541
Score = 50.1 bits (118), Expect = 8e-06
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI 63
FS++ + I +E + PT +Q +IP+I G D++ A+TGSGKT AF +P++
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQ 239
Query: 64 VY-----ETLKDQQE-GKKGK 78
+Y E LK +E G+ G+
Sbjct: 240 IYTDGPGEALKAVKENGRYGR 260
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 136 bits (342), Expect = 8e-32
Identities = 105/353 (29%), Positives = 161/353 (45%), Gaps = 80/353 (22%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
N P L++ P+RELA Q ++ LR + + GG +Q+ L+ GVDI++
Sbjct: 315 NRPGMLVLTPTRELALQVEGECCKYSY----KGLRSVCVYGGGNRDEQIEELKKGVDIII 370
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL+DL + +NL + +LVLDEAD +L G+ PQ+ ++++
Sbjct: 371 ATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFE----------PQI------MKIL 414
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ DV+ + +M TW P +VH RL +S++
Sbjct: 415 L--------DVRPDRQTVMTSATW---------PHSVH---------------RLAQSYL 442
Query: 465 R--------TDDVHAKDNTRPG---ANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC 513
+ T D+ A + + E WS L+ + D+ I+F
Sbjct: 443 KEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSST--------DKVIVFV 494
Query: 514 RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD 573
K D+L I S LHGDR+ +R++ LE FK G VR LI TD
Sbjct: 495 SRKAVADHLSSDLILGN---------ISVESLHGDREQRDREKALENFKTGKVRILIATD 545
Query: 574 VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV 626
+A+RG+D+H V +V N P + YVHRIGR GRA R G++I+ + +V
Sbjct: 546 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRV 598
Score = 42.4 bits (98), Expect = 0.002
Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 11 PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP--VIQIVYETL 68
PE+ + +++ + PT IQ+++ P++L G D++ A+TG+GKT + +P + ++ +L
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310
Query: 69 KDQQ 72
K Q+
Sbjct: 311 KGQR 314
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 136 bits (342), Expect = 8e-32
Identities = 96/333 (28%), Positives = 161/333 (48%), Gaps = 56/333 (16%)
Query: 286 APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG 345
+PK L++ P+RELA Q + K + KL GG + + Q++ + NG+DI+VG
Sbjct: 211 SPKVLVLAPTRELANQVAKDFKDITR-----KLSVACFYGGTSYQSQINHIRNGIDILVG 265
Query: 346 TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV 405
TPGR+ D + +G+L+LS++R +VLDE D +L G+++ + + ++ + S+ Q ++
Sbjct: 266 TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNP-QTLL 324
Query: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKSH 463
SAT + K + + VDL G+ TV H+ + + W
Sbjct: 325 FSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH------W------- 371
Query: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
+ P + + +++ G +AIIFC TK + +
Sbjct: 372 ---------------SQRPAVIGDVLQVYSGSEG----------RAIIFCETKKNVTEMA 406
Query: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
P K + CLHGD +R+ L+ F++G + L+ T+VAARG+DI
Sbjct: 407 M-------NPHIKQ---NAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPE 456
Query: 584 VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAI 616
V VI + P + ++Y+HR GR GRA R G+ I
Sbjct: 457 VDLVIQSSPPQDVESYIHRSGRTGRAGRTGICI 489
Score = 34.7 bits (78), Expect = 0.33
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
AFS + E + ++ IQ ++ + G D++ A TG+GKT +F+IP+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 63 IV---YETLKDQQEGK 75
+ ET+K + K
Sbjct: 198 RLQRNQETIKKSRSPK 213
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 134 bits (337), Expect = 3e-31
Identities = 97/331 (29%), Positives = 157/331 (47%), Gaps = 55/331 (16%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
+ P L++ P+RELA+Q + K +L+ I GG Q+ LE GV+I +
Sbjct: 243 DGPICLVLAPTRELAQQVQQVADDYGKC---SRLKSTCIYGGAPKGPQIRDLERGVEICI 299
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL D + +GK NL + +LVLDEAD +L G+ I ++ + Q+ D Q +
Sbjct: 300 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI---VDQIRPDR---QTL 353
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT +V++L+E + T +++ ++ + +H ++ +
Sbjct: 354 MWSATWPK-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---------------- 393
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
++ E+ K K + I K ++ IIF TK CD+L +
Sbjct: 394 -----------------VDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTR 436
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
+ G + +C+HGD+ ER L F+ G LI TDVA+RG+D+ V
Sbjct: 437 RMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDV 487
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLA 615
+VIN P+ ++YVHRIGR R+ G A
Sbjct: 488 KFVINYDYPNSSEDYVHRIGRTARSTNKGTA 518
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
AF + + + + PT IQ + PL L G D++ A+TGSGKT A+ +P I
Sbjct: 172 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 134 bits (337), Expect = 3e-31
Identities = 97/331 (29%), Positives = 157/331 (47%), Gaps = 55/331 (16%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
+ P L++ P+RELA+Q + K +L+ I GG Q+ LE GV+I +
Sbjct: 243 DGPICLVLAPTRELAQQVQQVADDYGKC---SRLKSTCIYGGAPKGPQIRDLERGVEICI 299
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL D + +GK NL + +LVLDEAD +L G+ I ++ + Q+ D Q +
Sbjct: 300 ATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI---VDQIRPDR---QTL 353
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT +V++L+E + T +++ ++ + +H ++ +
Sbjct: 354 MWSATWPK-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---------------- 393
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
++ E+ K K + I K ++ IIF TK CD+L +
Sbjct: 394 -----------------VDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTR 436
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
+ G + +C+HGD+ ER L F+ G LI TDVA+RG+D+ V
Sbjct: 437 RMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDV 487
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLA 615
+VIN P+ ++YVHRIGR R+ G A
Sbjct: 488 KFVINYDYPNSSEDYVHRIGRTARSTNKGTA 518
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
AF + + + + PT IQ + PL L G D++ A+TGSGKT A+ +P I
Sbjct: 172 AFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 132 bits (331), Expect = 2e-30
Identities = 101/348 (29%), Positives = 169/348 (48%), Gaps = 64/348 (18%)
Query: 279 QTKFLP----NAPKALIVEPSRELAEQTLNNIKQFKKYID---NPKLRELLIIGGVAARD 331
Q K LP P LI+ PSRELA QT ++ + + + +P LR L IGG++ ++
Sbjct: 246 QEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKE 305
Query: 332 QLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQI 391
Q+ + +GV ++V TPGRL DL+ ++L R+L LDEAD ++ G+ I + +
Sbjct: 306 QMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF 365
Query: 392 PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPK 451
G+R Q ++ SAT+ +KI +F +K P T++
Sbjct: 366 K-----GQR-QTLLFSATM--------PKKIQNFAKSALVK-----PVTIN--------- 397
Query: 452 TDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAII 511
+G++ + DV E E K++ Y + +++ +I
Sbjct: 398 -------VGRAGAASLDV---------IQEVEYVKEEAKMV---YLLECLQKTP-PPVLI 437
Query: 512 FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC 571
F K D D + +Y + +G V +HG + ER + +E F++G L+
Sbjct: 438 FAEKKADVDAIHEYLLLKG---------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 488
Query: 572 TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV 619
TDVA++G+D + +VIN +P+E +NYVHRIGR GR+ G+A + +
Sbjct: 489 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Score = 47.4 bits (111), Expect = 5e-05
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
+F EM I + +++ PT IQ + IP IL G D++ A TGSGKT F++PVI
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 63 IVYETLK----DQQEGKKG 77
E K ++EG G
Sbjct: 242 FCLEQEKRLPFSKREGPYG 260
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 131 bits (330), Expect = 2e-30
Identities = 98/334 (29%), Positives = 153/334 (45%), Gaps = 61/334 (18%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
+ P L++ P+RELA+Q ++ + +L+ I GG Q+ LE GV+I +
Sbjct: 166 DGPICLVLAPTRELAQQVQQVAAEYCRAC---RLKSTCIYGGAPKGPQIRDLERGVEICI 222
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL D + GK NL + +LVLDEAD +L G+ I ++ + Q+ D Q +
Sbjct: 223 ATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI---VDQIRPDR---QTL 276
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT +P V ED + D +H + + L +H
Sbjct: 277 MWSAT---------------WPKEVRQLAEDFLKDYIHINIGALE---------LSANH- 311
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE---HKMDQAIIFCRTKIDCDN 521
N ++ + K E +R ++E K ++ I+F TK CD
Sbjct: 312 ---------------NILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDE 356
Query: 522 LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI 581
L + + G + + +HGD+ ER L FK G LI TDVA+RG+D+
Sbjct: 357 LTRKMRRDG---------WPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDV 407
Query: 582 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLA 615
V +VIN P+ ++Y+HRIGR R+ + G A
Sbjct: 408 EDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTA 441
Score = 41.2 bits (95), Expect = 0.004
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP-VIQ 62
F E + + ++ PT IQA+ P+ L G D++ A+TGSGKT ++ +P ++
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 63 IVYETLKDQQEG 74
I ++ ++ +G
Sbjct: 156 INHQPFLERGDG 167
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 128 bits (322), Expect = 2e-29
Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 52/339 (15%)
Query: 286 APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVG 345
AP+ L++ P+RELA Q + K KL GG Q + NG+DI+VG
Sbjct: 260 APQVLVLAPTRELANQVSKDFSDITK-----KLSVACFYGGTPYGGQFERMRNGIDILVG 314
Query: 346 TPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIV 405
TPGR+ D + GKL+L++++ +VLDE D +L G++D + + + + S+ Q ++
Sbjct: 315 TPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNP-QTLL 373
Query: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
SAT P WV + + T V D + ++ K+ I
Sbjct: 374 FSATC---------------PHWVFNVAKKYMKSTYEQV--------DLIGKKTQKTAIT 410
Query: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY 525
+ + K + W++ ++ +R H+ + IIFC TK + L Q
Sbjct: 411 VEHLAIKCH----------WTQRAAVIGD--VIRVYSGHQ-GRTIIFCETKKEAQELSQ- 456
Query: 526 FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP 585
+ LHGD +R+ L+ F+ G L+ T+VAARG+DI V
Sbjct: 457 ---------NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVD 507
Query: 586 YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624
VI + P + ++Y+HR GR GRA R G+ I ++E
Sbjct: 508 LVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEE 546
Score = 43.1 bits (100), Expect = 0.001
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
AFS + E + ++ IQA++ + G D++ A TG+GKT +F+IP+I+
Sbjct: 187 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIE 246
Query: 63 IVYETLKDQQEGK 75
++ L+D++ G+
Sbjct: 247 KLHGELQDRKRGR 259
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 127 bits (319), Expect = 4e-29
Identities = 107/359 (29%), Positives = 166/359 (46%), Gaps = 64/359 (17%)
Query: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGT 346
+AL++ P+RELA+Q I Y+ IGG R+++ L+ IVVGT
Sbjct: 103 QALVLAPTRELAQQIQKVILALGDYMGATCHA---CIGGTNVRNEMQKLQAEAPHIVVGT 159
Query: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC 406
PGR+ D+++ L+ ++ VLDEAD +LS+G+ D I + ++ +QV++
Sbjct: 160 PGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL------NTSIQVVLL 213
Query: 407 SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRT 466
SAT+ + DV ++++K M P + +K E+ + + + V ER
Sbjct: 214 SATMPT-DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINV--------ER-------- 256
Query: 467 DDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYF 526
E W + L Y I QA+IF T+ D L +
Sbjct: 257 ----------------EEWK--LDTLCDLYETLTIT-----QAVIFLNTRRKVDWLTEKM 293
Query: 527 IQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY 586
F+ LHGD ER + F+ G R LI TD+ ARGID+ V
Sbjct: 294 ---------HARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 587 VINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE 645
VIN LP ++NY+HRIGR GR R G+AI+ V E +++ + + YNT ++E
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI-----ETFYNTTVEE 398
Score = 37.7 bits (86), Expect = 0.039
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI 63
F +M + + + + + P+ IQ +I + G DV+ A++G+GKT F+I ++Q
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 64 VYETLKDQQ 72
+ K+ Q
Sbjct: 95 LEIEFKETQ 103
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 127 bits (318), Expect = 5e-29
Identities = 107/361 (29%), Positives = 166/361 (45%), Gaps = 64/361 (17%)
Query: 286 APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVV 344
A +AL++ P+RELA+Q + Y+ IGG R ++ L+ I+V
Sbjct: 100 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIV 156
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
GTPGR+ D+++ L+ ++ VLDEAD +LS+G+ D I + ++ T QV+
Sbjct: 157 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVV 210
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT+ S DV ++++K M P + +K E+ + + + V ER
Sbjct: 211 LLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV--------ER------ 255
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
E W + L Y I QA+IF T+ D L +
Sbjct: 256 ------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTE 290
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
F+ +HGD ER + F+ G R LI TD+ ARGID+ V
Sbjct: 291 KM---------HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 341
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLK 644
VIN LP ++NY+HRIGR GR R G+AI++V E ++ + + YNT ++
Sbjct: 342 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIE 396
Query: 645 E 645
E
Sbjct: 397 E 397
Score = 38.9 bits (89), Expect = 0.017
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
+F +M + + + + + P+ IQ +I + G DV+ A++G+GKT F+I ++Q
Sbjct: 33 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92
Query: 63 IVYETLKDQQ 72
+ LK Q
Sbjct: 93 QIELDLKATQ 102
>gi|7661920 eukaryotic translation initiation factor 4A, isoform 3
[Homo sapiens]
Length = 411
Score = 126 bits (317), Expect = 6e-29
Identities = 99/339 (29%), Positives = 158/339 (46%), Gaps = 58/339 (17%)
Query: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
+ALI+ P+RELA Q + Y++ ++ IGG + + L+ G +V GTP
Sbjct: 108 QALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTP 164
Query: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
GR+ D++ L ++ LVLDEAD +L++G+ + I ++ +P T QV++ S
Sbjct: 165 GRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------QVVLIS 218
Query: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD 467
ATL ++ +++ K M P + +K ++ + + V V ER
Sbjct: 219 ATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER--------- 260
Query: 468 DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI 527
E W L Y I QA+IFC TK D L +
Sbjct: 261 ---------------EEWK--FDTLCDLYDTLTIT-----QAVIFCNTKRKVDWLTEKMR 298
Query: 528 QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV 587
+ F+ +HGD ER+ ++ F+ G R LI TDV ARG+D+ V +
Sbjct: 299 EAN---------FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 588 INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV 626
IN LP+ ++ Y+HRIGR GR R G+AI+ V + ++
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRI 388
Score = 43.1 bits (100), Expect = 0.001
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQI 63
F MG+ ++ + + + P+ IQ +I I+ G DV+ +++G+GKT FSI V+Q
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 64 VYETLKDQQ 72
+ +++ Q
Sbjct: 100 LDIQVRETQ 108
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 124 bits (312), Expect = 2e-28
Identities = 104/351 (29%), Positives = 158/351 (45%), Gaps = 47/351 (13%)
Query: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
P A+I+ P+RELA+Q +F K + +R + +IGG++ DQ L G +IV+ T
Sbjct: 469 PYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIAT 525
Query: 347 PGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVC 406
PGRL D++ L LS+ ++VLDEAD ++ G+ + ++ +P +
Sbjct: 526 PGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDP 585
Query: 407 SATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
L +F+ K + +M T +P V ERL +S++
Sbjct: 586 EKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYL 621
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR----AIKEHKMDQAII-FCRTKIDC 519
R V + A P E L E R AI E D II F K C
Sbjct: 622 RRPAVVYIGS----AGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGC 677
Query: 520 DNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI 579
D L + + G ++ LHG + +R+ L K G L+ TDVA RGI
Sbjct: 678 DVLAKSLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGI 728
Query: 580 DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV 630
DI V V+N + ++Y+HRIGR GRA + G+AI+ + E V+Y +
Sbjct: 729 DIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL 779
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
++ + + P I + +++ + PT IQ ++IP+ L D++ AETGSGKT AF IP++
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL 450
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 123 bits (308), Expect = 7e-28
Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)
Query: 271 HSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA 329
H + +T ++F P+ +IV P+REL Q + +K+ +R ++I GG
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQL 405
Query: 330 RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN 389
+ + G +I+ TPGRL D++ K+ L Q+++LVLDEAD +L G+ + ++ +
Sbjct: 406 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS 465
Query: 390 QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN 449
P + S +R Q ++ SAT ++++L+ + +
Sbjct: 466 -CPGMPSKEQR-QTLMFSATFPE-EIQRLAAEFL-------------------------- 496
Query: 450 PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA 509
K++ L+ +G+ DV + + + K E V ++ ++
Sbjct: 497 -KSNYLFVAVGQVGGACRDVQ------------QTVLQVGQFSKREKLVEILRNIGDERT 543
Query: 510 IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL 569
++F TK D + + Q+ + S +HGDR+ ER+Q L F+ G L
Sbjct: 544 MVFVETKKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRFGKCPVL 594
Query: 570 ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624
+ T VAARG+DI V +VIN LP YVHRIGR GR G AIS E +
Sbjct: 595 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD 649
Score = 46.2 bits (108), Expect = 1e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
F E + + + + + T +Q SIP+IL G D++ A+TGSGKT AF +P++
Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 123 bits (308), Expect = 7e-28
Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)
Query: 271 HSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA 329
H + +T ++F P+ +IV P+REL Q + +K+ +R ++I GG
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQL 405
Query: 330 RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN 389
+ + G +I+ TPGRL D++ K+ L Q+++LVLDEAD +L G+ + ++ +
Sbjct: 406 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS 465
Query: 390 QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN 449
P + S +R Q ++ SAT ++++L+ + +
Sbjct: 466 -CPGMPSKEQR-QTLMFSATFPE-EIQRLAAEFL-------------------------- 496
Query: 450 PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA 509
K++ L+ +G+ DV + + + K E V ++ ++
Sbjct: 497 -KSNYLFVAVGQVGGACRDVQ------------QTVLQVGQFSKREKLVEILRNIGDERT 543
Query: 510 IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL 569
++F TK D + + Q+ + S +HGDR+ ER+Q L F+ G L
Sbjct: 544 MVFVETKKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRFGKCPVL 594
Query: 570 ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624
+ T VAARG+DI V +VIN LP YVHRIGR GR G AIS E +
Sbjct: 595 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD 649
Score = 46.2 bits (108), Expect = 1e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
F E + + + + + T +Q SIP+IL G D++ A+TGSGKT AF +P++
Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 123 bits (308), Expect = 7e-28
Identities = 97/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)
Query: 271 HSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAA 329
H + +T ++F P+ +IV P+REL Q + +K+ +R ++I GG
Sbjct: 315 HMMHDGITASRFKELQEPECIIVAPTRELVNQIY---LEARKFSFGTCVRAVVIYGGTQL 371
Query: 330 RDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN 389
+ + G +I+ TPGRL D++ K+ L Q+++LVLDEAD +L G+ + ++ +
Sbjct: 372 GHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS 431
Query: 390 QIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVN 449
P + S +R Q ++ SAT ++++L+ + +
Sbjct: 432 -CPGMPSKEQR-QTLMFSATFPE-EIQRLAAEFL-------------------------- 462
Query: 450 PKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQA 509
K++ L+ +G+ DV + + + K E V ++ ++
Sbjct: 463 -KSNYLFVAVGQVGGACRDVQ------------QTVLQVGQFSKREKLVEILRNIGDERT 509
Query: 510 IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL 569
++F TK D + + Q+ + S +HGDR+ ER+Q L F+ G L
Sbjct: 510 MVFVETKKKADFIATFLCQE---------KISTTSIHGDREQREREQALGDFRFGKCPVL 560
Query: 570 ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKE 624
+ T VAARG+DI V +VIN LP YVHRIGR GR G AIS E +
Sbjct: 561 VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESD 615
Score = 46.2 bits (108), Expect = 1e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
F E + + + + + T +Q SIP+IL G D++ A+TGSGKT AF +P++
Sbjct: 256 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 313
>gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo
sapiens]
Length = 619
Score = 120 bits (301), Expect = 5e-27
Identities = 89/357 (24%), Positives = 165/357 (46%), Gaps = 61/357 (17%)
Query: 277 VTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL 336
+ + F P ALI+ P+RELA Q K+ + P+++ +L++GG+ QL L
Sbjct: 262 IMRALFESKTPSALILTPTRELAIQIERQAKELMSGL--PRMKTVLLVGGLPLPPQLYRL 319
Query: 337 ENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS 396
+ V +++ TPGRL D++ + L V+ +V+DEAD +L G+ + + IP
Sbjct: 320 QQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIP---- 375
Query: 397 DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVP-DTVHHVVVPVN--PKTD 453
Q I+ SAT+ + +++L+ +++H P + + GE ++P V +++ V K
Sbjct: 376 --NDCQTILVSATIPT-SIEQLASQLLHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKK 431
Query: 454 RLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFC 513
+L+E L + V + + GA ++ SEA++ + G
Sbjct: 432 KLFEILNDKKLFKPPVLVFVDCKLGA---DLLSEAVQKITG------------------- 469
Query: 514 RTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTD 573
+ +H ++ ERK L+ +GD ++ T
Sbjct: 470 --------------------------LKSISIHSEKSQIERKNILKGLLEGDYEVVVSTG 503
Query: 574 VAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV 630
V RG+D+ V V+N +P YVH+IGRVGR + G AI+ + +++++ +
Sbjct: 504 VLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDI 560
Score = 47.0 bits (110), Expect = 6e-05
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 10 MPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
+PE+ +++ + +PT IQ + IP+ L G D+L +A+TGSGKT AF +PVI
Sbjct: 210 LPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262
>gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo
sapiens]
Length = 483
Score = 119 bits (297), Expect = 1e-26
Identities = 97/336 (28%), Positives = 151/336 (44%), Gaps = 67/336 (19%)
Query: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
+A+++ P+RELA Q Q K++ K+ + GG RD + L++ V +V+ TP
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATP 223
Query: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
GR+ DL+ G + V+ +VLDEAD LLSQ DF+ M + I + K Q+++ S
Sbjct: 224 GRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTLP---KNRQILLYS 277
Query: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPD-TVHHVVVPVNPKT---DRLWERLGKSH 463
AT V+K + P ++L E ++ T ++ V K + L+ RL
Sbjct: 278 ATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRL---- 332
Query: 464 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE 523
+++Q+IIFC + + L
Sbjct: 333 -----------------------------------------QINQSIIFCNSSQRVELLA 351
Query: 524 QYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHG 583
+ Q G +SC +H + R + F+ G R L+CTD+ RGIDI
Sbjct: 352 KKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQA 402
Query: 584 VPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV 619
V VIN P + Y+HRIGR GR +GLAI+L+
Sbjct: 403 VNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI 438
Score = 54.3 bits (129), Expect = 4e-07
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
F + + E+ + EM W P+ IQ ESIP+ L G D+L A+ G+GK+GA+ IP+++
Sbjct: 98 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 115 bits (289), Expect = 1e-25
Identities = 94/344 (27%), Positives = 154/344 (44%), Gaps = 65/344 (18%)
Query: 287 PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGT 346
P A+I+ P+RELA Q K+F K + LR + + GG +Q++ L+ G +I+V T
Sbjct: 446 PIAVIMTPTRELALQITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 347 PGRLDDLVSTGK---LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV 403
PGR+ D+++ NL +V ++VLDEAD + G+ + R+ + V D Q
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD---RQT 556
Query: 404 IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHH--VVVPVNPKTDRLWERLGK 461
++ SAT ++ L+ +I+ P V + G V V +V+ K +L E LG
Sbjct: 557 VMFSATFPR-AMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG- 614
Query: 462 SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDN 521
+ E S I + K E+A +K
Sbjct: 615 ------------------HYQESGSVIIFVDKQEHADGLLK------------------- 637
Query: 522 LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI 581
D + C+ LHG ++R + FK G + L+ T VAARG+D+
Sbjct: 638 ------------DLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDV 685
Query: 582 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK 625
+ V+N + P+ ++YVHR GR GRA G A + + ++ +
Sbjct: 686 KHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQAR 729
Score = 47.8 bits (112), Expect = 4e-05
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 6 EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY 65
+ G+ +I ++++ + PT IQ ++IP I+ G D++ A+TGSGKT AF +P ++
Sbjct: 376 QCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLP----MF 431
Query: 66 ETLKDQQEGKKGKTTI 81
+ DQ+ ++G+ I
Sbjct: 432 RHIMDQRSLEEGEGPI 447
>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
[Homo sapiens]
Length = 881
Score = 115 bits (289), Expect = 1e-25
Identities = 100/336 (29%), Positives = 155/336 (46%), Gaps = 57/336 (16%)
Query: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
+ALI+ P+RELA QTL K+ K+ L+ LI+GG DQ + L DI++ TP
Sbjct: 168 RALILSPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATP 224
Query: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
GRL + L L V ++V DEAD L G+++ + + ++P Q ++ S
Sbjct: 225 GRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH------QTVLFS 278
Query: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD 467
ATL V E + V++ ++ T +L E+L +T
Sbjct: 279 ATLPKLLV------------------EFARAGLTEPVLIRLDVDT-KLNEQL-----KTS 314
Query: 468 DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI 527
+++T+ A+ + VR DQ ++F TK + L +
Sbjct: 315 FFLVREDTKA----------AVLLHLLHNVVRP-----QDQTVVFVATKHHAEYLTELLT 359
Query: 528 QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV 587
Q + SC ++ P RK NL +F G LI TD+AARG+DI + V
Sbjct: 360 TQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNV 410
Query: 588 INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK 623
IN + P + + ++HR+GRV RA R G A SLVA ++
Sbjct: 411 INYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
F MG+ + + + + + +PT IQ ++IP+IL G DV+ A TGSGKT F +P+ +
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 156
>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
[Homo sapiens]
Length = 882
Score = 115 bits (289), Expect = 1e-25
Identities = 100/336 (29%), Positives = 155/336 (46%), Gaps = 57/336 (16%)
Query: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
+ALI+ P+RELA QTL K+ K+ L+ LI+GG DQ + L DI++ TP
Sbjct: 168 RALILSPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATP 224
Query: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS 407
GRL + L L V ++V DEAD L G+++ + + ++P Q ++ S
Sbjct: 225 GRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH------QTVLFS 278
Query: 408 ATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTD 467
ATL V E + V++ ++ T +L E+L +T
Sbjct: 279 ATLPKLLV------------------EFARAGLTEPVLIRLDVDT-KLNEQL-----KTS 314
Query: 468 DVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFI 527
+++T+ A+ + VR DQ ++F TK + L +
Sbjct: 315 FFLVREDTKA----------AVLLHLLHNVVRP-----QDQTVVFVATKHHAEYLTELLT 359
Query: 528 QQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYV 587
Q + SC ++ P RK NL +F G LI TD+AARG+DI + V
Sbjct: 360 TQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNV 410
Query: 588 INVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK 623
IN + P + + ++HR+GRV RA R G A SLVA ++
Sbjct: 411 INYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
F MG+ + + + + + +PT IQ ++IP+IL G DV+ A TGSGKT F +P+ +
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 156
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 114 bits (284), Expect = 4e-25
Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 64/345 (18%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
N P L++ P+RELA L+ + KY L+ + I GG Q+ + GVDI++
Sbjct: 295 NGPGMLVLTPTRELA---LHVEAECSKY-SYKGLKSICIYGGRNRNGQIEDISKGVDIII 350
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL+DL +NL + +LV+DEAD +L + I ++
Sbjct: 351 ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI----------------- 393
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
DV+ + +M TW PDTV +L S++
Sbjct: 394 -------LLDVRPDRQTVMTSATW---------PDTVR---------------QLALSYL 422
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM---DQAIIFCRTKIDCDN 521
+ + N A + + + K + A+ M D+ I+F K D+
Sbjct: 423 KDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADD 482
Query: 522 LEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI 581
L F QG S LHG+ + ++++ +E FK G+++ LI TD+ +RG+D+
Sbjct: 483 LSSDFNIQG---------ISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDL 533
Query: 582 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKV 626
+ V +V N P YVHR+G +GR + G +++L+ K+
Sbjct: 534 NDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKM 578
Score = 41.6 bits (96), Expect = 0.003
Identities = 17/49 (34%), Positives = 36/49 (73%)
Query: 11 PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP 59
P++ +++ + + PT IQ+++ P+IL G D+++ A+TG+GKT ++ +P
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMP 279
>gi|62241022 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3
[Homo sapiens]
Length = 370
Score = 113 bits (283), Expect = 6e-25
Identities = 112/434 (25%), Positives = 187/434 (43%), Gaps = 106/434 (24%)
Query: 258 LSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFK 310
L++ P I +SQ A ++Q + P+ L + P+ ELA QT I+Q
Sbjct: 18 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 77
Query: 311 KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVL 369
K+ P+L+ + G + E IV+GTPG + D S K ++ +++ VL
Sbjct: 78 KFY--PELKLAYAVRGNKLERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 132
Query: 370 DEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW 428
DEAD +++ QG+ D R+ +P + Q+++ SAT V K ++K++ P
Sbjct: 133 DEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPDPNV 185
Query: 429 VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA 488
+ LK E+ DT+ V + + ++ +A
Sbjct: 186 IKLKREEETLDTIKQYYVLCSSRDEKF-------------------------------QA 214
Query: 489 IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD 548
+ L G + QA+IFC T+ L K+GHQ + L G+
Sbjct: 215 LCNLYGAITIA--------QAMIFCHTRKTASWLAAEL-------SKEGHQVAL--LSGE 257
Query: 549 RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNYVHR 602
+R +ERF++G + L+ T+V ARGID+ V VIN LP +K + Y+HR
Sbjct: 258 MMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHR 317
Query: 603 IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI 662
IGR GR + GLA+++V ++ + M +L+ I
Sbjct: 318 IGRTGRFGKRGLAVNMVDSK-------------------------------HSMNILNRI 346
Query: 663 EEHLNCTISQVEPD 676
+EH N I +++ D
Sbjct: 347 QEHFNKKIERLDTD 360
>gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [Homo
sapiens]
Length = 479
Score = 113 bits (283), Expect = 6e-25
Identities = 112/434 (25%), Positives = 187/434 (43%), Gaps = 106/434 (24%)
Query: 258 LSKAPDGYIVKSQHSGN-------AQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFK 310
L++ P I +SQ A ++Q + P+ L + P+ ELA QT I+Q
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186
Query: 311 KYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQVRFLVL 369
K+ P+L+ + G + E IV+GTPG + D S K ++ +++ VL
Sbjct: 187 KFY--PELKLAYAVRGNKLERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241
Query: 370 DEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTW 428
DEAD +++ QG+ D R+ +P + Q+++ SAT V K ++K++ P
Sbjct: 242 DEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKVVPDPNV 294
Query: 429 VDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEA 488
+ LK E+ DT+ V + + ++ +A
Sbjct: 295 IKLKREEETLDTIKQYYVLCSSRDEKF-------------------------------QA 323
Query: 489 IKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGD 548
+ L G + QA+IFC T+ L K+GHQ + L G+
Sbjct: 324 LCNLYGAITIA--------QAMIFCHTRKTASWLAAEL-------SKEGHQVAL--LSGE 366
Query: 549 RKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------QNYVHR 602
+R +ERF++G + L+ T+V ARGID+ V VIN LP +K + Y+HR
Sbjct: 367 MMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHR 426
Query: 603 IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEI 662
IGR GR + GLA+++V ++ + M +L+ I
Sbjct: 427 IGRTGRFGKRGLAVNMVDSK-------------------------------HSMNILNRI 455
Query: 663 EEHLNCTISQVEPD 676
+EH N I +++ D
Sbjct: 456 QEHFNKKIERLDTD 469
Score = 38.1 bits (87), Expect = 0.030
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILG--GGDVLMAAETGSGKTGAFSIPV 60
+F E+ + P++ Q V M + P+ IQ ++PL+L +++ +++G+GKT AF + +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 61 IQIV 64
+ V
Sbjct: 153 LSQV 156
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 112 bits (281), Expect = 9e-25
Identities = 95/335 (28%), Positives = 146/335 (43%), Gaps = 57/335 (17%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
+ P A+IV P+REL +Q K+F K + LR + + GG + +Q L+ G +IVV
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV 381
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL D V NL +V +LV DEAD + G+ + + + + Q +
Sbjct: 382 CTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR------QTL 435
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT ++KL+ I+ P V V + N ++ E L
Sbjct: 436 LFSATFRK-KIEKLARDILIDPIRV-----------VQGDIGEANEDVTQIVEILH---- 479
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
+ P W+ + R ++ ++F K + + L
Sbjct: 480 ---------------SGPSKWNWLTR--------RLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
Q+G H LHGD ER + + FKK D+ L+ TDVAARG+DI +
Sbjct: 517 NLKQEG-------HNLGL--LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV 619
VIN + + + HRIGR GRA G+A +L+
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 47.8 bits (112), Expect = 4e-05
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 2 AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
++F+ G ++ + + ++ PT IQ + +P+ L G D++ A+TGSGKT AF P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 112 bits (281), Expect = 9e-25
Identities = 95/335 (28%), Positives = 146/335 (43%), Gaps = 57/335 (17%)
Query: 285 NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVV 344
+ P A+IV P+REL +Q K+F K + LR + + GG + +Q L+ G +IVV
Sbjct: 325 DGPIAVIVCPTRELCQQIHAECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVV 381
Query: 345 GTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVI 404
TPGRL D V NL +V +LV DEAD + G+ + + + + Q +
Sbjct: 382 CTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDR------QTL 435
Query: 405 VCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI 464
+ SAT ++KL+ I+ P V V + N ++ E L
Sbjct: 436 LFSATFRK-KIEKLARDILIDPIRV-----------VQGDIGEANEDVTQIVEILH---- 479
Query: 465 RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQ 524
+ P W+ + R ++ ++F K + + L
Sbjct: 480 ---------------SGPSKWNWLTR--------RLVEFTSSGSVLLFVTKKANAEELAN 516
Query: 525 YFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGV 584
Q+G H LHGD ER + + FKK D+ L+ TDVAARG+DI +
Sbjct: 517 NLKQEG-------HNLGL--LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSI 567
Query: 585 PYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV 619
VIN + + + HRIGR GRA G+A +L+
Sbjct: 568 KTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602
Score = 47.8 bits (112), Expect = 4e-05
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 2 AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI 61
++F+ G ++ + + ++ PT IQ + +P+ L G D++ A+TGSGKT AF P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
>gi|62241024 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2
[Homo sapiens]
Length = 448
Score = 112 bits (280), Expect = 1e-24
Identities = 114/440 (25%), Positives = 191/440 (43%), Gaps = 104/440 (23%)
Query: 245 EEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLN 304
EE + P +A S++ G K+ A ++Q + P+ L + P+ ELA QT
Sbjct: 95 EELRLP--QNLIAQSQSGTG---KTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 149
Query: 305 NIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGK-LNLSQ 363
I+Q K+ P+L+ + G + E IV+GTPG + D S K ++ +
Sbjct: 150 VIEQMGKFY--PELKLAYAVRGNKLERGQKISEQ---IVIGTPGTVLDWCSKLKFIDPKK 204
Query: 364 VRFLVLDEADGLLS-QGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKI 422
++ VLDEAD +++ QG+ D R+ +P + Q+++ SAT V K ++K+
Sbjct: 205 IKVFVLDEADVMIATQGHQDQSIRIQRMLP------RNCQMLLFSATFED-SVWKFAQKV 257
Query: 423 MHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSP 482
+ P + LK E+ DT+ V + + ++
Sbjct: 258 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF--------------------------- 290
Query: 483 EMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSC 542
+A+ L G + QA+IFC T+ L K+GHQ +
Sbjct: 291 ----QALCNLYGAITIA--------QAMIFCHTRKTASWLAAEL-------SKEGHQVAL 331
Query: 543 VCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK------ 596
L G+ +R +ERF++G + L+ T+V ARGID+ V VIN LP +K
Sbjct: 332 --LSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 389
Query: 597 QNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEM 656
+ Y+HRIGR GR + GLA+++V ++ + M
Sbjct: 390 ETYLHRIGRTGRFGKRGLAVNMVDSK-------------------------------HSM 418
Query: 657 QLLSEIEEHLNCTISQVEPD 676
+L+ I+EH N I +++ D
Sbjct: 419 NILNRIQEHFNKKIERLDTD 438
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 112 bits (279), Expect = 2e-24
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 23/165 (13%)
Query: 97 DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG 143
DR S + + +G W G RA+ G+ +G+ +E+ + D
Sbjct: 127 DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH 180
Query: 144 LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH- 202
+ R+GWS S LG + F +G+GGTGKKS N +F+NYG++F +D IGC+ D + G+
Sbjct: 181 VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGND 240
Query: 203 --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE 244
+ F+KNGK +G+AF I + QAL+P ++KN ++FNFG+
Sbjct: 241 VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,248,578
Number of Sequences: 37866
Number of extensions: 1352755
Number of successful extensions: 2829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2545
Number of HSP's gapped (non-prelim): 211
length of query: 740
length of database: 18,247,518
effective HSP length: 110
effective length of query: 630
effective length of database: 14,082,258
effective search space: 8871822540
effective search space used: 8871822540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.