Guide to the Human Genome
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Name: DDX17 Sequence: fasta or formatted (729aa) NCBI GI: 38201710
Description:

DEAD box polypeptide 17 isoform 1

Referenced in:

DEAD / H Helicase Family
Capping and Splicing

Other entries for this name:
alt prot [183aa] DEAD box polypeptide 17 isoform 2
alt prot [731aa] DEAD box polypeptide 17 isoform 3
alt prot [181aa] DEAD box polypeptide 17 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         59           3
 C cysteine            1.6         12           1
 D aspartate           5.9         43           2
 E glutamate           5.6         41           2
 F phenylalanine       3.2         23           2
 G glycine             9.9         72           8
 H histidine           1.5         11           2
 I isoleucine          4.4         32           2
 K lysine              4.3         31           3
 L leucine             6.9         50           2
 M methionine          2.5         18           1
 N asparagine          3.2         23           2
 P proline             8.1         59           9
 Q glutamine           5.3         39           2
 R arginine            8.1         59           2
 S serine              6.2         45           3
 T threonine           5.9         43           2
 V valine              4.8         35           2
 W tryptophan          0.7          5           1
 Y tyrosine            4.0         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD box polypeptide 17 isoform 1 
DDX17                 0.997   DEAD box polypeptide 17 isoform 3 
DDX5                  0.528   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX17                 0.241   DEAD box polypeptide 17 isoform 4 
DDX17                 0.237   DEAD box polypeptide 17 isoform 2 
DDX42                 0.237   DEAD box polypeptide 42 protein 
DDX42                 0.237   DEAD box polypeptide 42 protein 
DDX46                 0.230   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX43                 0.211   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX53                 0.210   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
DDX3X                 0.209   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX3Y                 0.204   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.204   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX23                 0.183   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX4                  0.175   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.175   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.175   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX41                 0.165   DEAD-box protein abstrakt 
DDX59                 0.148   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX47                 0.133   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX50                 0.123   nucleolar protein GU2 
DDX49                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX21                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
EIF4A3                0.120   eukaryotic translation initiation factor 4A, isoform ...
EIF4A1                0.116   eukaryotic translation initiation factor 4A isoform 1...
EIF4A2                0.113   eukaryotic translation initiation factor 4A2 
DDX54                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX27                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX47                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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