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Search of human proteins with 4757840
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens] 360 e-100
gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens] 286 5e-78
gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens] 62 2e-10
gi|154959419 cervical cancer suppressor-1 [Homo sapiens] 61 4e-10
gi|154959417 cervical cancer suppressor-1 [Homo sapiens] 61 4e-10
gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens] 60 1e-09
gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens] 56 2e-08
gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens] 54 7e-08
gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo sap... 54 9e-08
gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens] 52 2e-07
gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens] 51 6e-07
gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens] 51 6e-07
gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo ... 47 8e-06
gi|4757842 BCL2-like 2 protein [Homo sapiens] 46 1e-05
gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens] 45 3e-05
gi|14210524 BCL2-related ovarian killer [Homo sapiens] 36 0.019
gi|223633939 solute carrier family 39 (zinc transporter), member... 32 0.28
gi|223633937 solute carrier family 39 (zinc transporter), member... 32 0.28
gi|9966783 BCL2-like 10 (apoptosis facilitator) [Homo sapiens] 30 1.1
gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens] 30 1.1
gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens] 30 1.1
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 28 4.1
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 28 4.1
gi|94538350 protocadherin 17 precursor [Homo sapiens] 28 4.1
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 28 5.3
gi|41352718 deltex homolog 1 [Homo sapiens] 28 5.3
gi|72534676 leucine rich repeat containing 17 isoform 1 [Homo sa... 27 6.9
gi|239582714 leucine rich repeat containing 17 isoform 2 [Homo s... 27 6.9
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 27 6.9
gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens] 27 9.0
>gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]
Length = 175
Score = 360 bits (924), Expect = e-100
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
Sbjct: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
Query: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
Sbjct: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
Query: 121 FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC 175
FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC
Sbjct: 121 FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC 175
>gi|168480072 BCL2-related protein A1 isoform 2 [Homo sapiens]
Length = 163
Score = 286 bits (733), Expect = 5e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
Sbjct: 1 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN 60
Query: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
Sbjct: 61 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY 120
Query: 121 FVAEFIMNNTGEWIRQNGGW 140
FVAEFIMNNTGEWIRQNGGW
Sbjct: 121 FVAEFIMNNTGEWIRQNGGW 140
>gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens]
Length = 239
Score = 62.4 bits (150), Expect = 2e-10
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 66 TARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEF 125
TAR F V+E+ F DG+ NWGRIV F F G++ + + ++++P VD I+ ++ E+
Sbjct: 125 TARGRFATVVEELFRDGV-NWGRIVAFFEFGGVMCVESVNREMSPLVD---NIALWMTEY 180
Query: 126 IMNNTGEWIRQNGGWENGFVKKFEP 150
+ + WI+ NGGW+ FV+ + P
Sbjct: 181 LNRHLHTWIQDNGGWD-AFVELYGP 204
>gi|154959419 cervical cancer suppressor-1 [Homo sapiens]
Length = 79
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 141 ENGFVKKFEPKSGWMTFLEVTGKICEML 168
ENGFVKK EPKSGWMTFLEVTGKICEML
Sbjct: 16 ENGFVKKLEPKSGWMTFLEVTGKICEML 43
>gi|154959417 cervical cancer suppressor-1 [Homo sapiens]
Length = 79
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/28 (96%), Positives = 27/28 (96%)
Query: 141 ENGFVKKFEPKSGWMTFLEVTGKICEML 168
ENGFVKK EPKSGWMTFLEVTGKICEML
Sbjct: 16 ENGFVKKLEPKSGWMTFLEVTGKICEML 43
>gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens]
Length = 205
Score = 59.7 bits (143), Expect = 1e-09
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 66 TARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEF 125
TAR F V+E+ F DG+ NWGRIV F F G++ + + ++++P VD I+ ++ E+
Sbjct: 125 TARGRFATVVEELFRDGV-NWGRIVAFFEFGGVMCVESVNREMSPLVD---NIALWMTEY 180
Query: 126 IMNNTGEWIRQNGGW 140
+ + WI+ NGGW
Sbjct: 181 LNRHLHTWIQDNGGW 195
>gi|20631964 BCL2-associated X protein isoform delta [Homo sapiens]
Length = 143
Score = 55.8 bits (133), Expect = 2e-08
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 27 GSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINW 86
G GP+ + ++++ A +Q + V D+ R +F +V F DG NW
Sbjct: 10 GGGPTSSEQIMKTGALLLQGMIA-----------AVDTDSPREVFFRVAADMFSDGNFNW 58
Query: 87 GRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWENGFVK 146
GR+V +F F L+ K L ++ + + I + +F+ WI+ GGW+ G +
Sbjct: 59 GRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGWD-GLLS 114
Query: 147 KFEPKSGWMTFLEVTGKICEMLSLLKQ 173
F + + V G + L++ K+
Sbjct: 115 YFGTPTWQTVTIFVAGVLTASLTIWKK 141
>gi|20631958 BCL2-associated X protein isoform alpha [Homo sapiens]
Length = 192
Score = 53.9 bits (128), Expect = 7e-08
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWEN 142
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW+
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGWD- 159
Query: 143 GFVKKFEPKSGWMTFLEVTGKICEMLSLLKQ 173
G + F + + V G + L++ K+
Sbjct: 160 GLLSYFGTPTWQTVTIFVAGVLTASLTIWKK 190
>gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo
sapiens]
Length = 350
Score = 53.5 bits (127), Expect = 9e-08
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 27 GSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINW 86
G+ K L+ V VQ+ E + L +++ + D ++L ++VM F DG+ NW
Sbjct: 203 GATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSL-SRVMIHVFSDGVTNW 261
Query: 87 GRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWENGFVK 146
GRIVT+ +F + K L + + ++ + + ++ +W+ + GW+ GFV+
Sbjct: 262 GRIVTLISFGAFVAKHL---KTINQESCIEPLAESITDVLVRTKRDWLVKQRGWD-GFVE 317
Query: 147 KF 148
F
Sbjct: 318 FF 319
>gi|20336335 BCL2-like 1 isoform 1 [Homo sapiens]
Length = 233
Score = 52.4 bits (124), Expect = 2e-07
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 62 VSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYF 121
++ TA F QV+ + F DG+ NWGRIV F+F G L + + +++ V I+ +
Sbjct: 114 ITPGTAYQSFEQVVNELFRDGV-NWGRIVAFFSFGGALCVESVDKEMQVLV---SRIAAW 169
Query: 122 VAEFIMNNTGEWIRQNGGWE 141
+A ++ ++ WI++NGGW+
Sbjct: 170 MATYLNDHLEPWIQENGGWD 189
>gi|4757838 BCL2-associated X protein isoform beta [Homo sapiens]
Length = 218
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|242117893 BCL2-associated X protein isoform sigma [Homo sapiens]
Length = 179
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 23 IPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDG 82
+PQ S K S L+ + + +E + V D+ R +F +V F DG
Sbjct: 50 VPQDAS-TKKLSECLKRIGDELDSNMELQRM-----IAAVDTDSPREVFFRVAADMFSDG 103
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V +F F L+ K L ++ + + I + +F+ WI+ GGW
Sbjct: 104 NFNWGRVVALFYFASKLVLKALCTKVP---ELIRTIMGWTLDFLRERLLGWIQDQGGW 158
>gi|239751987 PREDICTED: hypothetical protein XP_002348091 [Homo
sapiens]
Length = 211
Score = 47.0 bits (110), Expect = 8e-06
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 25 QPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGII 84
QP S + R L + + + + ++ L ++ + + A F ++ FE GI
Sbjct: 66 QPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTA-ENAYEYFTKIASSLFESGI- 123
Query: 85 NWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNN-TGEWIRQNGGW 140
NWGR+V + F L + ++ + + +++ FV +F++++ WI Q GGW
Sbjct: 124 NWGRVVALLGFSYRLALHIYQRGLTGFLG---QVTRFVVDFMLHHCIARWIAQRGGW 177
>gi|4757842 BCL2-like 2 protein [Homo sapiens]
Length = 193
Score = 46.2 bits (108), Expect = 1e-05
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 26 PGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNV---VSVDTARTLFNQVMEKEFEDG 82
PG GP+ L + E E + ++ V+ +A+ F QV ++ F+ G
Sbjct: 33 PGEGPAADP--LHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGG 90
Query: 83 IINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
NWGR+V F F L + + +++ P V +E ++ ++ +WI +GGW
Sbjct: 91 P-NWGRLVAFFVFGAALCAESVNKEMEPLVGQVQE---WMVAYLETRLADWIHSSGGW 144
>gi|4502363 BCL2-antagonist/killer 1 [Homo sapiens]
Length = 211
Score = 45.1 bits (105), Expect = 3e-05
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 25 QPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGII 84
QP S + R L + + + + ++ L ++ + + A F ++ FE GI
Sbjct: 66 QPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTA-ENAYEYFTKIATSLFESGI- 123
Query: 85 NWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNN-TGEWIRQNGGW 140
NWGR+V + F L + + + + +++ FV +F++++ WI Q GGW
Sbjct: 124 NWGRVVALLGFGYRLALHVYQHGLTGFLG---QVTRFVVDFMLHHCIARWIAQRGGW 177
>gi|14210524 BCL2-related ovarian killer [Homo sapiens]
Length = 212
Score = 35.8 bits (81), Expect = 0.019
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 37 LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFE 96
L+ + SV + V + L L + VV+ F V F GI WG++V+++A
Sbjct: 77 LEMIRPSVYRNVARQLHISLQSEPVVT-----DAFLAVAGHIFSAGI-TWGKVVSLYAVA 130
Query: 97 GILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGW 140
L +RQ V + + EF+ W+R+ GGW
Sbjct: 131 AGLAVDCVRQAQPAMVHALVDC---LGEFVRKTLATWLRRRGGW 171
>gi|223633939 solute carrier family 39 (zinc transporter), member 12
isoform 1 [Homo sapiens]
Length = 691
Score = 32.0 bits (71), Expect = 0.28
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 60 NVVSVDTARTLFNQVMEKEFEDGIINWG-------RIVTIFAFEGI-LIKKLLRQQIAPD 111
N+++ D + F+ MEKE EDG ++W ++V IF +G+ LI K +Q++P
Sbjct: 280 NIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPG 339
Query: 112 V 112
+
Sbjct: 340 I 340
>gi|223633937 solute carrier family 39 (zinc transporter), member 12
isoform 2 [Homo sapiens]
Length = 654
Score = 32.0 bits (71), Expect = 0.28
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 60 NVVSVDTARTLFNQVMEKEFEDGIINWG-------RIVTIFAFEGI-LIKKLLRQQIAPD 111
N+++ D + F+ MEKE EDG ++W ++V IF +G+ LI K +Q++P
Sbjct: 280 NIITHDQDYSNFSSSMEKESEDGPVSWDQTCFSARQLVEIFLQKGLSLISKEDFKQMSPG 339
Query: 112 V 112
+
Sbjct: 340 I 340
>gi|9966783 BCL2-like 10 (apoptosis facilitator) [Homo sapiens]
Length = 204
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 86 WGRIVTIFAFEGILIKK---------------LLRQQIAPDVDTYKEISYFVAEFIMNNT 130
WGR+VT+ F G L+++ L++Q + + ++ +M
Sbjct: 94 WGRVVTLVTFAGTLLERGPLVTARWKKWGFQPRLKEQEGDVARDCQRLVALLSSRLMGQH 153
Query: 131 GEWIRQNGGWENGFVKKF 148
W++ GGW+ GF F
Sbjct: 154 RAWLQAQGGWD-GFCHFF 170
>gi|21040330 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 95 FEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWE 141
F+ L+ + + A D + F +++ N WI+Q+GGWE
Sbjct: 270 FKAALVIDVTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGWE 316
>gi|21040328 BCL2-like 14 isoform 1 [Homo sapiens]
Length = 327
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 95 FEGILIKKLLRQQIAPDVDTYKEISYFVAEFIMNNTGEWIRQNGGWE 141
F+ L+ + + A D + F +++ N WI+Q+GGWE
Sbjct: 270 FKAALVIDVTAKLTAIDNHPMNRVLGFGTKYLKENFSPWIQQHGGWE 316
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 28.1 bits (61), Expect = 4.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 34 SRVLQNVAFSVQKEVEKNLKSCLDNVNVVS 63
++VLQ S+++ +EK K C++ +N+ S
Sbjct: 5938 NKVLQTADISIEEMIEKLQKDCMEEINLFS 5967
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 28.1 bits (61), Expect = 4.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 34 SRVLQNVAFSVQKEVEKNLKSCLDNVNVVS 63
++VLQ S+++ +EK K C++ +N+ S
Sbjct: 5938 NKVLQTADISIEEMIEKLQKDCMEEINLFS 5967
>gi|94538350 protocadherin 17 precursor [Homo sapiens]
Length = 1159
Score = 28.1 bits (61), Expect = 4.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 24 PQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTART 69
PQ G G K ++ +N VQ EVE+ ++ ++ +NVVS + T
Sbjct: 750 PQLGGGKGKKKKINKNDIMLVQSEVEE--RNAMNVMNVVSSPSLAT 793
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 27.7 bits (60), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 23 IPQPGSGPSKTSRVLQNVAF 42
IP P S P KTS +L N AF
Sbjct: 637 IPTPSSSPFKTSSILVNAAF 656
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 27.7 bits (60), Expect = 5.3
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 19 CVLQIPQPGSGPSKTSRV----LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQV 74
C+ + P+P P S+ + V +K +K+LK + +VV R +V
Sbjct: 349 CLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVV-----RRYMQKV 403
Query: 75 MEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQI 108
ED I R+VT +EG+L K +R ++
Sbjct: 404 KNPPDEDCTICMERLVTASGYEGVLRHKGVRPEL 437
>gi|72534676 leucine rich repeat containing 17 isoform 1 [Homo
sapiens]
Length = 441
Score = 27.3 bits (59), Expect = 6.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 30 PSKTSRVLQNVAFSVQKE--VEKNLKSCLDNV--NVVSVDTARTLFNQVMEKEFED 81
P S N F +Q K LK +N+ ++V +D + NQ+ KEFED
Sbjct: 235 PEVDSTFCHNYVFPIQTLDCKRKELKKVPNNIPPDIVKLDLSYNKINQLRPKEFED 290
>gi|239582714 leucine rich repeat containing 17 isoform 2 [Homo
sapiens]
Length = 313
Score = 27.3 bits (59), Expect = 6.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 30 PSKTSRVLQNVAFSVQKE--VEKNLKSCLDNV--NVVSVDTARTLFNQVMEKEFED 81
P S N F +Q K LK +N+ ++V +D + NQ+ KEFED
Sbjct: 235 PEVDSTFCHNYVFPIQTLDCKRKELKKVPNNIPPDIVKLDLSYNKINQLRPKEFED 290
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 27.3 bits (59), Expect = 6.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 21 LQIPQPGS----GPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVME 76
L P PG GP++ S + + S + E +L +CL +V+ + R +V+E
Sbjct: 106 LPAPAPGPTSSPGPARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLE 165
Query: 77 KE 78
K+
Sbjct: 166 KQ 167
>gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens]
Length = 171
Score = 26.9 bits (58), Expect = 9.0
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 21 LQIPQPGSGPSKTSRV--LQNVAFSVQKEVEKNLKSCLDNVNVVSVDTARTLFNQVMEKE 78
L P P GP + +N+ + Q + NL +CL + V+ + R +V+E++
Sbjct: 45 LPSPLPNLGPQGPALTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQ 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,411,915
Number of Sequences: 37866
Number of extensions: 242878
Number of successful extensions: 603
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 30
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.