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Search of human proteins with 46409306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46409306 family with sequence similarity 43, member B [Homo
sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46409306 family with sequence similarity 43, member B [Homo s... 678 0.0
gi|31377557 hypothetical protein LOC131583 [Homo sapiens] 267 1e-71
gi|132626790 low density lipoprotein receptor adaptor protein 1 ... 49 6e-06
gi|154816208 phosphotyrosine interaction domain containing 1 iso... 45 1e-04
gi|40255260 phosphotyrosine interaction domain containing 1 isof... 45 1e-04
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 40 0.002
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 39 0.008
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 39 0.008
gi|31415880 protein phosphatase 1, regulatory (inhibitor) subuni... 39 0.008
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 37 0.024
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 37 0.024
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 37 0.024
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 37 0.024
gi|116268091 PHD finger protein 23 [Homo sapiens] 36 0.054
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 36 0.054
gi|215422388 death-domain associated protein isoform a [Homo sap... 36 0.054
gi|215422366 death-domain associated protein isoform b [Homo sap... 36 0.054
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 36 0.054
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 36 0.054
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.070
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.070
gi|52630440 FK506-binding protein 8 [Homo sapiens] 35 0.092
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.12
gi|4506467 radixin [Homo sapiens] 35 0.12
gi|17975763 myelin transcription factor 1 [Homo sapiens] 35 0.12
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 35 0.12
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.12
gi|171906567 peripheral benzodiazepine receptor-associated prote... 35 0.12
gi|171906559 peripheral benzodiazepine receptor-associated prote... 35 0.12
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 35 0.12
>gi|46409306 family with sequence similarity 43, member B [Homo
sapiens]
Length = 329
Score = 678 bits (1749), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MLPWRRNKFVLVEDEAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFRSRR 60
MLPWRRNKFVLVEDEAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFRSRR
Sbjct: 1 MLPWRRNKFVLVEDEAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFRSRR 60
Query: 61 QKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPHGIR 120
QKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPHGIR
Sbjct: 61 QKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPHGIR 120
Query: 121 MQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRCHAVL 180
MQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRCHAVL
Sbjct: 121 MQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRCHAVL 180
Query: 181 LARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLL 240
LARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLL
Sbjct: 181 LARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLL 240
Query: 241 NAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTC 300
NAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTC
Sbjct: 241 NAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTC 300
Query: 301 SLRGAPAPPPPAQPRRWKAGPRERAGQAR 329
SLRGAPAPPPPAQPRRWKAGPRERAGQAR
Sbjct: 301 SLRGAPAPPPPAQPRRWKAGPRERAGQAR 329
>gi|31377557 hypothetical protein LOC131583 [Homo sapiens]
Length = 423
Score = 267 bits (682), Expect = 1e-71
Identities = 148/297 (49%), Positives = 198/297 (66%), Gaps = 26/297 (8%)
Query: 1 MLPWRRNKFVLVED---EAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFR 57
MLPW+++KF L+ + K K + L Y S LSS R+CP+ L R+G +FR
Sbjct: 1 MLPWKKHKFELLAEAPPRQASKPKGYAVSLHY-SALSSLARACPE----GALSRVGSMFR 55
Query: 58 SRRQKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGG-GTKMKLTLGP 116
S+R+K+ + EDPTYTV YLGNA T+ A+GDGCTD AVGKIW++ G GTKMKLT+
Sbjct: 56 SKRKKLHITSEDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSA 115
Query: 117 HGIRMQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRC 176
GIRM E A RRP H YLL R+TYC AD R P+VFAWVYRH+ +HKAV+LRC
Sbjct: 116 QGIRMVHAEERAL-----RRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRC 170
Query: 177 HAVLLARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPL 236
HAVL+++ KA+A+A LL QT+ A ++FKRL+R+ DARH +Q+ + A ++P PL
Sbjct: 171 HAVLVSKPEKAQAMALLLYQTSANALAEFKRLKRRDDARHQQQELV----GAHTIPLVPL 226
Query: 237 RR-LLNAKCAYRPPPSERSRGAPRLSSIQEE------DEEEEEDDAEEQEGGVPQRE 286
R+ LL+ C Y+ PP ERSR AP+L SI E+ ++E +E++ EEQ G P+ E
Sbjct: 227 RKLLLHGPCCYK-PPVERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEE 282
>gi|132626790 low density lipoprotein receptor adaptor protein 1
[Homo sapiens]
Length = 308
Score = 48.9 bits (115), Expect = 6e-06
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 68 EDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTL--GPHGIRMQPCE 125
E +++ YLG + KG+ + A+ +I A G K+TL P GI +
Sbjct: 44 EGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGKKLQKVTLKVSPRGIILTD-- 101
Query: 126 RSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRCHAVLLARAH 185
+ + + RI+YCTAD H +VFA++ + Q L CHA L +
Sbjct: 102 ------NLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQS---LECHAFLCTKRK 152
Query: 186 KARALARLLRQTALAAFSDFKRLQRQSDARHVRQQ 220
A+A+ + Q AF ++ + + + R Q
Sbjct: 153 MAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQ 187
>gi|154816208 phosphotyrosine interaction domain containing 1
isoform 2 [Homo sapiens]
Length = 217
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 141 YLLPRITYCTADGR-HPRVFAWVYRHQARHKAVVLRCHAVLLARAHKARALARLLRQTAL 199
+ + RI YCTAD P +FAWVYR + + CHAV +A+ LA + +
Sbjct: 128 FQVARIAYCTADHNVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKLAHAMMEAFR 187
Query: 200 AAFSDFK---RLQRQSDARHVRQQ 220
F K R+ S + V Q+
Sbjct: 188 KTFHSMKSDGRIHSNSSSEEVSQE 211
>gi|40255260 phosphotyrosine interaction domain containing 1 isoform
1 [Homo sapiens]
Length = 248
Score = 44.7 bits (104), Expect = 1e-04
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 141 YLLPRITYCTADGR-HPRVFAWVYRHQARHKAVVLRCHAVLLARAHKARALARLLRQTAL 199
+ + RI YCTAD P +FAWVYR + + CHAV +A+ LA + +
Sbjct: 159 FQVARIAYCTADHNVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKLAHAMMEAFR 218
Query: 200 AAFSDFK---RLQRQSDARHVRQQ 220
F K R+ S + V Q+
Sbjct: 219 KTFHSMKSDGRIHSNSSSEEVSQE 242
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 208 LQRQSDARHVRQQH---LRAGGAAASVPRAPLRRLLNAKCAYRPPPSERSRGA--PRLSS 262
L+ + RH+R++H R GG ++ A PP E +G P ++
Sbjct: 449 LKMSTIERHIRRRHPGSTRLGGPVQALIAREWSEKAAHLLALGPPRPESPQGPIPPGTAA 508
Query: 263 IQEE---DEEEEEDDAEEQEGGVP-----QRERP----EVLSLARELRTCSLRGAPAPPP 310
+E DEEEE ++ EE+ G VP ERP E +E +L P PPP
Sbjct: 509 ASDEGGGDEEEEPEEEEEEWGDVPLSPGAPLERPAEEEEDEEDGQEPGGLALPPPPPPPP 568
Query: 311 PAQPR 315
P PR
Sbjct: 569 PPPPR 573
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 263 IQEEDEEEEEDDAEEQEG-GVPQRERPEVLSLARELRTC--SLRGAPAPPPPAQPRRWKA 319
+Q +EEEEE++ EE+EG GVP P+ A C RG P P + RR +
Sbjct: 184 VQGAEEEEEEEEEEEEEGAGVPACP-PKGPGKAPAGGGCRRQRRGGPVAP---RARRLRL 239
Query: 320 GPRERAGQAR 329
RAG +R
Sbjct: 240 SASRRAGGSR 249
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 38.5 bits (88), Expect = 0.008
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 209 QRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYRPPPSER-SRGAPRLSSI---- 263
Q +S+AR V + S PR P R + + P PS R +R + R ++I
Sbjct: 112 QARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITSHF 171
Query: 264 ---------QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQP 314
QEE E + D++ ++E +R V S R R P P +P
Sbjct: 172 AKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVAR---------PLPAEEP 222
Query: 315 RRWKAGPRERAGQAR 329
R K+G R + R
Sbjct: 223 ERAKSGTRTEKEEER 237
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 253 RSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAP---P 309
R G PR EEDEEEEEDD EE+E Q E +V+ + +T +G P P
Sbjct: 112 RELGYPR-----EEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERP 166
Query: 310 PPAQPRRWKAGPRER 324
PP G ++
Sbjct: 167 PPLDESERDGGSEDQ 181
>gi|31415880 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 2 [Homo sapiens]
Length = 168
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 253 RSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAP---P 309
R G PR EEDEEEEEDD EE+E Q E +V+ + +T +G P P
Sbjct: 76 RELGYPR-----EEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERP 130
Query: 310 PPAQPRRWKAGPRER 324
PP G ++
Sbjct: 131 PPLDESERDGGSEDQ 145
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 37.0 bits (84), Expect = 0.024
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 228 AASVPRAPLRRLLNAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRER 287
A S P AP ++ + P S +P +EE+EEEEE+D EE+EG R
Sbjct: 237 AYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISR 296
Query: 288 -PEVLSLARELRTCS--LRGAPAPPPPAQPRRWKAGP 321
E L+ + + S G +P P AQP + P
Sbjct: 297 ISETLAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAP 333
Score = 32.0 bits (71), Expect = 0.78
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 250 PSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPP 309
P E + A +EE+EEEEE++ EE+E E+ + A + AP+
Sbjct: 1008 PEEATEEAGVRGGAEEEEEEEEEEEEEEEE-----EEQQPATTTATSTAAAAPSTAPSAG 1062
Query: 310 PPAQPRRWKAGPRERAGQ 327
A + GP R Q
Sbjct: 1063 STAGDSGAEDGPASRVSQ 1080
Score = 30.0 bits (66), Expect = 3.0
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 207 RLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYRPPPSERSRGAPRLSSIQEE 266
R + +S R R R GG+ S R RR + + PPP+ S + R
Sbjct: 577 RSRSRSTRRRSRSTDRRRGGSRRSRSREKRRR---RRRSASPPPATSSSSSSR------- 626
Query: 267 DEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPP 311
E + ++GG ++++ S + APAP PP
Sbjct: 627 ---RERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPP 668
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 37.0 bits (84), Expect = 0.024
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAP----PPPAQPRRWKA 319
+EEDEEEEE++ EE+E QR + E + G PAP PPPA + A
Sbjct: 380 EEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTGEPAPVLSSPPPADVSTFLA 439
Query: 320 GP 321
P
Sbjct: 440 FP 441
Score = 28.9 bits (63), Expect = 6.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 260 LSSIQEEDEEEEEDDAEEQEGGVPQRERPE 289
L+S+ ++++EEEE++ EE+E + E +
Sbjct: 354 LASLSDDEDEEEEEEGEEEEEEAEEEEEED 383
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 37.0 bits (84), Expect = 0.024
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLR 303
Q+E+EEEEE++ EE+E G E+P L L R S+R
Sbjct: 544 QQEEEEEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVR 583
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 37.0 bits (84), Expect = 0.024
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLR 303
Q+E+EEEEE++ EE+E G E+P L L R S+R
Sbjct: 544 QQEEEEEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVR 583
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 35.8 bits (81), Expect = 0.054
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 225 GGAAASVPRAPLRRLLNAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQ 284
G + + ++ R+L A+ R PP + P + +EE+EEEEE++ EE V
Sbjct: 209 GEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEEEEEEEEMATVVGG 268
Query: 285 RERPEVLSLARELRTCSLRGAPAPPPPAQP 314
VL E AP PP P
Sbjct: 269 EAPVPVLPTPPE--------APRPPATVHP 290
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 35.8 bits (81), Expect = 0.054
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 190 LARLLRQTALAAFS-------DFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNA 242
LAR LR+ A S + LQ +S+ +++ R G ++ P L +
Sbjct: 357 LARRLRENRSLAMSRLDEVISKYAMLQDKSEEGERKKRRARLQGTSSHSADTPEASLDSG 416
Query: 243 KCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQE 279
+ P S+G P S + +DE++EE D EE+E
Sbjct: 417 E----GPSGMASQGCPSASRAETDDEDDEESDEEEEE 449
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 35.8 bits (81), Expect = 0.054
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 190 LARLLRQTALAAFS-------DFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNA 242
LAR LR+ A S + LQ +S+ +++ R G ++ P L +
Sbjct: 357 LARRLRENRSLAMSRLDEVISKYAMLQDKSEEGERKKRRARLQGTSSHSADTPEASLDSG 416
Query: 243 KCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQE 279
+ P S+G P S + +DE++EE D EE+E
Sbjct: 417 E----GPSGMASQGCPSASRAETDDEDDEESDEEEEE 449
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 35.8 bits (81), Expect = 0.054
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 190 LARLLRQTALAAFS-------DFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNA 242
LAR LR+ A S + LQ +S+ +++ R G ++ P L +
Sbjct: 369 LARRLRENRSLAMSRLDEVISKYAMLQDKSEEGERKKRRARLQGTSSHSADTPEASLDSG 428
Query: 243 KCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQE 279
+ P S+G P S + +DE++EE D EE+E
Sbjct: 429 E----GPSGMASQGCPSASRAETDDEDDEESDEEEEE 461
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 35.8 bits (81), Expect = 0.054
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERP 288
+EE+EEEEE D E QEGG P E P
Sbjct: 95 EEEEEEEEEGDGEGQEGGDPGSEAP 119
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 35.8 bits (81), Expect = 0.054
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERP 288
+EE+EEEEE D E QEGG P E P
Sbjct: 68 EEEEEEEEEGDGEGQEGGDPGSEAP 92
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 35.4 bits (80), Expect = 0.070
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 265 EEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPRR 316
EE+ EEE ++ EE+ E R LR+ + R P PPPP P R
Sbjct: 1362 EEEGEEEGEEEEEESSDSSSSSDGEGALRRRSLRSHARRRRPPPPPPPPPPR 1413
Score = 33.5 bits (75), Expect = 0.27
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 266 EDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPRRWK 318
E+EEEE D+ G R + S AR R P PPPP PR ++
Sbjct: 1370 EEEEEESSDSSSSSDGEGALRRRSLRSHARRRRP------PPPPPPPPPRAYE 1416
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 251 SERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLAREL----RTCSLRGAP 306
S S + S EDEEEEE A P RE P E+ R P
Sbjct: 1048 SSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTP 1107
Query: 307 APPPPAQPRRWKAGPRERA 325
P A P R AGP E +
Sbjct: 1108 LPEQEASPAR-PAGPTEES 1125
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 247 RPPPSERSRGA----PRLSSIQEEDEEEEEDDAEEQEGGVPQRERPE 289
R PSE S + PR S+ EEDE++ E + E E G P + P+
Sbjct: 897 RKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPK 943
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.4 bits (80), Expect = 0.070
Identities = 34/99 (34%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 227 AAASVPRAPLRRLLNAKCAYRPPPSERSRGAPRLS--SIQEEDEEEEEDDAEEQEGG--- 281
A A P PL LL A A PPP +R G PR S S+ D A G
Sbjct: 1449 AQARAP-TPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLVRPPAGAALGRELL 1507
Query: 282 -VPQRERPEVLSLARELRTCSL----RGAPAPPPPAQPR 315
+P + + V + RT +L G PAPPPP P+
Sbjct: 1508 LLPGQPQTPVFPSTHDPRTVTLDFRNAGIPAPPPPLPPQ 1546
>gi|52630440 FK506-binding protein 8 [Homo sapiens]
Length = 413
Score = 35.0 bits (79), Expect = 0.092
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 264 QEEDEEEEEDDAE-----EQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPRRW 317
+EE+EEEEEDD E G P E + +LARE P P P P W
Sbjct: 38 EEEEEEEEEDDLSELPPLEDMGQPPAEEAEQPGALAREFLAAM---EPEPAPAPAPEEW 93
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.12
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 193 LLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYRPPPSE 252
+L L+AFSD K+ + ++ ++ + S P + +R P +
Sbjct: 160 MLPTIPLSAFSDPKKTKPSHGSKDANKE-----SSKTSKPHKVTKE-------HRERPRK 207
Query: 253 RSRGAPRLSSIQEEDEEEEEDDAEEQ-EGGVPQRER----------PEVLSLARELRTCS 301
S ++ E + +D + + EG +P+ E+ P++ +L + S
Sbjct: 208 DSESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPPPKAAFKEPKMALKETKLESTS 267
Query: 302 LRGAPAPPPPAQPR 315
+G P PPPP PR
Sbjct: 268 PKGGPPPPPPPPPR 281
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 34.7 bits (78), Expect = 0.12
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 188 RALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRLLNAKCAYR 247
+A L QT A D +R + + +A + ++ A A +++ + ++ N +
Sbjct: 360 KAQKELEEQTRKALELDQERKRAKEEAERLEKERRAAEEAKSAIAKQAADQMKNQEQL-- 417
Query: 248 PPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPA 307
+E + +++ ++E +++EE+ E Q +E E EL+T P
Sbjct: 418 --AAELAEFTAKIALLEEAKKKKEEEATEWQHKAFAAQEDLE--KTKEELKTVMSAPPPP 473
Query: 308 PPPPAQP 314
PPPP P
Sbjct: 474 PPPPVIP 480
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 34.7 bits (78), Expect = 0.12
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPP 310
+EE+EEEEE++ EE+E P E S + LRG +P P
Sbjct: 290 EEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPESPSP 336
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 251 SERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPE 289
SE S + S +EEDEEEEE++ EE+E + E E
Sbjct: 245 SEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEE 283
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEE+D EE+E + E E
Sbjct: 264 EEEEEEEEEEDEEEEEEEEEEEEEEE 289
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEED+ EE+E + E E
Sbjct: 265 EEEEEEEEEDEEEEEEEEEEEEEEEE 290
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EEDEEEEE++ EE+E + E E
Sbjct: 271 EEEDEEEEEEEEEEEEEEEEEEEEEE 296
Score = 28.9 bits (63), Expect = 6.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 252 ERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPE 289
E S+ LS +E++EEEEE++ EE++ + E E
Sbjct: 247 ESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEE 284
Score = 28.9 bits (63), Expect = 6.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEE++ EE+E + E E
Sbjct: 275 EEEEEEEEEEEEEEEEEEEEEEEEEE 300
Score = 28.9 bits (63), Expect = 6.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEE++ EE+E + E E
Sbjct: 276 EEEEEEEEEEEEEEEEEEEEEEEEEE 301
Score = 28.9 bits (63), Expect = 6.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEE++ EE+E + E E
Sbjct: 277 EEEEEEEEEEEEEEEEEEEEEEEEEE 302
Score = 28.5 bits (62), Expect = 8.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPE 289
+EE+EEEEE++ EE+E + E E
Sbjct: 263 EEEEEEEEEEEDEEEEEEEEEEEEEE 288
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 15/51 (29%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQP 314
+EE+EEEEE++AEE+E E P LS PP PA P
Sbjct: 315 EEEEEEEEEEEAEEEEEEEDSEEAPPPLS---------------PPQPASP 350
Score = 28.5 bits (62), Expect = 8.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARE 296
+EE+E EEE++ E+ E P P+ S A E
Sbjct: 321 EEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEE 353
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 34.7 bits (78), Expect = 0.12
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 212 SDARHVRQQHL--RAGGAAASVPRAPLRRLLNAKCAYRPPPSERSRGAPRLSSIQEEDEE 269
S+ + +Q H G +AS P +P+ P S SR + R +S E
Sbjct: 223 SNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTS----PEP 278
Query: 270 EEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPRRWKAGPRERAG 326
+ +E E P + P V R G+ P PP PR WK+ P +G
Sbjct: 279 RKPSPSESPE---PWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSG 332
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 34.7 bits (78), Expect = 0.12
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 27/67 (40%)
Query: 259 RLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPA------ 312
+L SI EE+EEEEED+ EE+ G CS R P PP PA
Sbjct: 1268 KLFSIPEEEEEEEEDEEEEKSGA-----------------GCSSRD-PGPPEPALLGLGC 1309
Query: 313 ---QPRR 316
QPRR
Sbjct: 1310 DSGQPRR 1316
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 260 LSSIQEEDEEEEEDDAEE 277
LS IQEE+EEEEE++ EE
Sbjct: 1197 LSDIQEEEEEEEEEEEEE 1214
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 34.7 bits (78), Expect = 0.12
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 27/67 (40%)
Query: 259 RLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPA------ 312
+L SI EE+EEEEED+ EE+ G CS R P PP PA
Sbjct: 1328 KLFSIPEEEEEEEEDEEEEKSGA-----------------GCSSRD-PGPPEPALLGLGC 1369
Query: 313 ---QPRR 316
QPRR
Sbjct: 1370 DSGQPRR 1376
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 260 LSSIQEEDEEEEEDDAEE 277
LS IQEE+EEEEE++ EE
Sbjct: 1257 LSDIQEEEEEEEEEEEEE 1274
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 34.7 bits (78), Expect = 0.12
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 251 SERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLS 292
S S + +SS +EE+E EEE++ EE+EGG + EV S
Sbjct: 400 SSLSSSSNSVSSEEEEEEGEEEEEEEEEEGGSGASDSSEVSS 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,930,317
Number of Sequences: 37866
Number of extensions: 873814
Number of successful extensions: 14534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 10417
Number of HSP's gapped (non-prelim): 2534
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.