Guide to the Human Genome
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Name: S100A9 Sequence: fasta or formatted (114aa) NCBI GI: 4506773
Description:

S100 calcium-binding protein A9

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          3           1
 C cysteine            0.9          1           1
 D aspartate           5.3          6           1
 E glutamate          12.3         14           2
 F phenylalanine       4.4          5           1
 G glycine             7.0          8           1
 H histidine           7.0          8           3
 I isoleucine          5.3          6           2
 K lysine              9.6         11           2
 L leucine             9.6         11           1
 M methionine          5.3          6           1
 N asparagine          6.1          7           1
 P proline             3.5          4           1
 Q glutamine           4.4          5           1
 R arginine            2.6          3           1
 S serine              3.5          4           1
 T threonine           6.1          7           1
 V valine              2.6          3           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium-binding protein A9 
S100A12               0.288   S100 calcium-binding protein A12 
S100B                 0.219   S100 calcium-binding protein, beta 
S100P                 0.200   S100 calcium binding protein P 
S100A1                0.191   S100 calcium binding protein A1 
S100Z                 0.181   S100 calcium binding protein Z 
S100A2                0.177   S100 calcium binding protein A2 
FLG                   0.177   filaggrin 
S100A11               0.172   S100 calcium binding protein A11 
FLG2                  0.167   filaggrin family member 2 
S100A4                0.167   S100 calcium-binding protein A4 
S100A4                0.167   S100 calcium-binding protein A4 
HRNR                  0.158   hornerin 
S100A5                0.149   S100 calcium binding protein A5 
S100A13               0.149   S100 calcium binding protein A13 
S100A13               0.149   S100 calcium binding protein A13 
S100A13               0.149   S100 calcium binding protein A13 
S100A13               0.149   S100 calcium binding protein A13 
S100A13               0.149   S100 calcium binding protein A13 
S100A8                0.140   S100 calcium-binding protein A8 
S100A6                0.135   S100 calcium-binding protein A6 
S100A10               0.116   S100 calcium binding protein A10 
S100G                 0.116   calbindin 3 
RPTN                  0.116   repetin 
S100A16               0.112   S100 calcium binding protein A16 
CRNN                  0.102   cornulin 
S100A3                0.102   S100 calcium binding protein A3 
S100A7                0.098   S100 calcium binding protein A7 
S100A7A               0.088   S100 calcium binding protein A7-like 1 
S100A14               0.084   S100 calcium binding protein A14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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