Search of human proteins with 4506725

Search of human proteins with 4506725

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506725 ribosomal protein S4, X-linked X isoform [Homo
sapiens]
         (263 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]    536   e-153
gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo sapi...   506   e-144
gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]           497   e-141
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    30   2.1  
gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sap...    30   2.1  
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin...    30   2.8  
gi|56788368 phosphatidylinositol-binding clathrin assembly prote...    29   4.8  
gi|56788366 phosphatidylinositol-binding clathrin assembly prote...    29   4.8  
gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]            29   4.8  
gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like...    28   8.2  
gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor ...    28   8.2  
gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like...    28   8.2  
gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]    28   8.2  
gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]    28   8.2  

>gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]
          Length = 263

 Score =  536 bits (1382), Expect = e-153
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
           VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
Sbjct: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120

Query: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
           YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180

Query: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
           CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLTIAEERDKRLAAKQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo
           sapiens]
          Length = 263

 Score =  506 bits (1304), Expect = e-144
 Identities = 244/263 (92%), Positives = 254/263 (96%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI+FLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
           VKKICMQRFIKIDGKVR D+TYPAGFMDVISI+KTGE+FRL+YDTKGRFAVHRIT EEAK
Sbjct: 61  VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 120

Query: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
           YKLCKVRKI VG KGIPHLVTHDARTIRYPDP+IKVNDT+QIDL TGKI +FIKFDTGNL
Sbjct: 121 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 180

Query: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
           CMV GGANLGR+GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG GNKPWISLPR
Sbjct: 181 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLT+AEERDKRLA KQSSG
Sbjct: 241 GKGIRLTVAEERDKRLATKQSSG 263


>gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]
          Length = 263

 Score =  497 bits (1280), Expect = e-141
 Identities = 241/263 (91%), Positives = 252/263 (95%)

Query: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
           MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLI+FLRNRLKYALTGDE
Sbjct: 1   MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 60

Query: 61  VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
           VKKICMQ F+KIDGKVR DITYPAGF+DVISI+KTGE+FRL+Y+TKG FAVHRIT EEAK
Sbjct: 61  VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 120

Query: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
           YKLCKVRKI VGTKGIPHLVTHDARTIRYPDPLIKVNDT+QIDL TGKIT FIKFDTGN+
Sbjct: 121 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180

Query: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 240
           CMV  GANLGR+GVITNRERHPGS DVVHVKDANGNSFATR+SNIFVIG GNKPWISLPR
Sbjct: 181 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 240

Query: 241 GKGIRLTIAEERDKRLAAKQSSG 263
           GKGIRLTIAEERDKRLAAKQSSG
Sbjct: 241 GKGIRLTIAEERDKRLAAKQSSG 263


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 38   LRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGF--MDVISIDKT 95
            L  CL    F+  R  Y +  D+ K  C +    +DGK   +I  P GF  +  + +D  
Sbjct: 1655 LSSCLSNFHFMCARASYCIFQDDKKVFCQKHTDLLDGK---EIVNPDGFDVLRRVYVDFE 1711

Query: 96   GENFR 100
            G NF+
Sbjct: 1712 GINFK 1716


>gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sapiens]
          Length = 4486

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 117  EEAKYKLCKVRKIFVGTKGIPHLVT---HDARTIRYPDPLIKVNDTIQIDLETG-KITDF 172
            E+A   +C + +I    +G   LV       +++      I   D  QI L  G +I DF
Sbjct: 2801 EDAMRHVCHINRILESPRGNALLVGVGGSGKQSLTRLAAFISSMDVFQITLRKGYQIQDF 2860

Query: 173  IKFDTGNLCMVTGGANLGRIGVITNRE 199
             K D  +LC+  G  NL  + ++T+ +
Sbjct: 2861 -KMDLASLCLKAGVKNLNTVFLMTDAQ 2886


>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
            isoform a [Homo sapiens]
          Length = 1749

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 167  GKITDFIKFDTGNLCMVTGGAN----LGRIGVITNRERHPGSFDVVHVKDANG-----NS 217
            GK+ DFI   +  +  + G A     L  +G+    E +P   D+ + ++A       N+
Sbjct: 1343 GKLEDFI---SSKILPLDGSAKHLLGLLEVGMDRRAEGNPRGTDLENPREAEEDARPFNA 1399

Query: 218  FATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 258
               RLS   +  K + PW  LPRG G+ L   +ER   +AA
Sbjct: 1400 LCKRLSEDGISRK-SFPW-RLPRGNGLVLPPHKERPYTIAA 1438


>gi|56788368 phosphatidylinositol-binding clathrin assembly protein
           isoform 2 [Homo sapiens]
          Length = 610

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 199 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 258
           E+H  S +   +KD+   S AT LSN           +S     G+ LT  +ER+K+ A 
Sbjct: 279 EQHLASLEGKKIKDSTAASRATTLSNA----------VSSLASTGLSLTKVDEREKQAAL 328

Query: 259 KQ 260
           ++
Sbjct: 329 EE 330


>gi|56788366 phosphatidylinositol-binding clathrin assembly protein
           isoform 1 [Homo sapiens]
          Length = 652

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 199 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 258
           E+H  S +   +KD+   S AT LSN           +S     G+ LT  +ER+K+ A 
Sbjct: 279 EQHLASLEGKKIKDSTAASRATTLSNA----------VSSLASTGLSLTKVDEREKQAAL 328

Query: 259 KQ 260
           ++
Sbjct: 329 EE 330


>gi|51479173 dynein, axonemal, heavy chain 11 [Homo sapiens]
          Length = 4523

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 110  AVHRITPEEAKYKLCKVRKIFVGTKGIPHLV---THDARTIRYPDPLIKVNDTIQIDLET 166
            A+H +  E+A   +C++ +I    +G   LV       +++      ++  +  QI L  
Sbjct: 2831 AMHLVLFEDAMQHVCRISRILRTPQGCALLVGVGGSGKQSLSRLAAYLRGLEVFQITLTE 2890

Query: 167  GKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVV 208
            G     ++ D  NL + TG  N+  + ++T+ +    SF V+
Sbjct: 2891 GYGIQELRVDLANLYIRTGAKNMPTVFLLTDAQVLDESFLVL 2932


>gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like
           isoform 1 [Homo sapiens]
          Length = 1279

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 151 DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT 184
           DP   V+ TI + L+ G I  +   DTG  C+V+
Sbjct: 885 DPSATVHPTICLGLQDGSILLYSSVDTGTQCLVS 918


>gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor
           [Homo sapiens]
          Length = 350

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 112 HRITPEEAKYKLCKVRKIFVGTKGIPHLVTHD 143
           HR TP+E   K   +  I +   GIP+L+T D
Sbjct: 232 HRYTPKEQLKKHTILADIVISAAGIPNLITAD 263


>gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like
           isoform 2 [Homo sapiens]
          Length = 1240

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 151 DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVT 184
           DP   V+ TI + L+ G I  +   DTG  C+V+
Sbjct: 846 DPSATVHPTICLGLQDGSILLYSSVDTGTQCLVS 879


>gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]
          Length = 182

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 80  ITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
           ++YPA + D   I +  E FRL+   +   +  RI    +  K C + ++   T+
Sbjct: 95  LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTE 149


>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
          Length = 433

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 80  ITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
           ++YPA + D   I +  E FRL+   +   +  RI    +  K C + ++   T+
Sbjct: 95  LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTE 149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,478,236
Number of Sequences: 37866
Number of extensions: 474382
Number of successful extensions: 698
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 15
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.