Guide to the Human Genome
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Name: PEX3 Sequence: fasta or formatted (373aa) NCBI GI: 4505727
Description:

peroxisomal biogenesis factor 3

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         18           2
 C cysteine            1.9          7           1
 D aspartate           3.8         14           1
 E glutamate           6.2         23           2
 F phenylalanine       2.9         11           2
 G glycine             4.6         17           2
 H histidine           2.4          9           1
 I isoleucine          6.2         23           2
 K lysine              6.2         23           3
 L leucine            13.9         52           2
 M methionine          2.9         11           2
 N asparagine          5.1         19           1
 P proline             3.8         14           2
 Q glutamine           6.4         24           3
 R arginine            4.6         17           2
 S serine              8.6         32           3
 T threonine           5.9         22           2
 V valine              6.4         24           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 3 
PPP2R5C               0.013   gamma isoform of regulatory subunit B56, protein pho...
PPP2R5C               0.013   gamma isoform of regulatory subunit B56, protein ph...
PPP2R5C               0.013   gamma isoform of regulatory subunit B56, protein ph...
PPP2R5C               0.013   gamma isoform of regulatory subunit B56, protein pho...
PPP2R5C               0.013   gamma isoform of regulatory subunit B56, protein pho...
WBSCR17               0.013   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
PPP2R5D               0.013   delta isoform of regulatory subunit B56, protein pho...
PPP2R5D               0.013   delta isoform of regulatory subunit B56, protein pho...
PPP2R5D               0.013   delta isoform of regulatory subunit B56, protein phos...
PPL                   0.010   periplakin 
FOXN2                 0.008   T-cell leukemia virus enhancer factor 
LMBR1                 0.008   limb region 1 protein 
GALNT9                0.008   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
ZFHX4                 0.007   zinc finger homeodomain 4 
FAM175A               0.006   coiled-coil domain containing 98 
KDM5A                 0.006   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.006   retinoblastoma binding protein 2 isoform 2 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
FAM111A               0.006   hypothetical protein LOC63901 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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