Guide to the Human Genome
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Name: FAM111A Sequence: fasta or formatted (611aa) NCBI GI: 38505209
Description:

hypothetical protein LOC63901

Not currently referenced in the text

Other entries for this name:
alt mRNA {611aa} hypothetical protein LOC63901
alt mRNA {611aa} hypothetical protein LOC63901
alt mRNA {611aa} hypothetical protein LOC63901
alt mRNA {611aa} hypothetical protein LOC63901
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         25           3
 C cysteine            2.5         15           1
 D aspartate           4.1         25           2
 E glutamate           8.5         52           2
 F phenylalanine       4.7         29           3
 G glycine             5.7         35           2
 H histidine           2.9         18           1
 I isoleucine          6.1         37           2
 K lysine              9.5         58           3
 L leucine             6.4         39           2
 M methionine          2.8         17           2
 N asparagine          4.6         28           2
 P proline             3.6         22           1
 Q glutamine           5.6         34           2
 R arginine            4.9         30           2
 S serine              7.2         44           3
 T threonine           5.7         35           2
 V valine              6.9         42           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.4         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC63901 
FAM111A               1.000   hypothetical protein LOC63901 
FAM111A               1.000   hypothetical protein LOC63901 
FAM111A               1.000   hypothetical protein LOC63901 
FAM111A               1.000   hypothetical protein LOC63901 
FAM111B               0.194   hypothetical protein LOC374393 isoform b 
FAM111B               0.194   hypothetical protein LOC374393 isoform b 
FAM111B               0.194   hypothetical protein LOC374393 isoform a 
PRLR                  0.007   prolactin receptor 
PLCB4                 0.007   phospholipase C beta 4 isoform a 
PLCB4                 0.007   phospholipase C beta 4 isoform b 
PPFIBP1               0.006   PTPRF interacting protein binding protein 1 isoform ...
NCOA6                 0.006   nuclear receptor coactivator 6 
MYH6                  0.005   myosin heavy chain 6 
FSIP1                 0.005   fibrous sheath interacting protein 1 
CHST9                 0.004   GalNAc-4-sulfotransferase 2 
C10orf71              0.004   hypothetical protein LOC118461 isoform 1 
GBP6                  0.004   guanylate binding protein family, member 6 
CCDC136               0.004   coiled-coil domain containing 136 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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