Guide to the Human Genome
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Name: APBB1 Sequence: fasta or formatted (710aa) NCBI GI: 4502131
Description:

amyloid beta A4 precursor protein-binding, family B, member 1 isoform E9

Referenced in:

Additional Brain Proteins
WW Domain

Other entries for this name:
alt prot [708aa] amyloid beta A4 precursor protein-binding, family B, member 1 iso...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         69           2
 C cysteine            1.8         13           2
 D aspartate           4.2         30           4
 E glutamate           9.6         68           5
 F phenylalanine       2.7         19           1
 G glycine             7.6         54           3
 H histidine           2.8         20           1
 I isoleucine          2.3         16           2
 K lysine              3.5         25           1
 L leucine             9.9         70           3
 M methionine          1.8         13           1
 N asparagine          3.7         26           2
 P proline             8.3         59           2
 Q glutamine           4.8         34           2
 R arginine            5.1         36           2
 S serine              9.3         66           4
 T threonine           4.4         31           2
 V valine              5.2         37           1
 W tryptophan          2.1         15           1
 Y tyrosine            1.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta A4 precursor protein-binding, family B, ... 
APBB1                 0.994   amyloid beta A4 precursor protein-binding, family B,...
APBB2                 0.381   amyloid beta A4 precursor protein-binding, family B,...
APBB3                 0.221   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.216   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.216   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.216   amyloid beta precursor protein-binding, family B, me...
SETD1B                0.019   SET domain containing 1B 
SETD1A                0.018   SET domain containing 1A 
MICAL3                0.017   microtubule associated monoxygenase, calponin and L...
CHIC1                 0.014   cysteine-rich hydrophobic domain 1 
PTMS                  0.013   parathymosin 
MYST4                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
HIVEP3                0.013   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.013   human immunodeficiency virus type I enhancer bindin...
LOC100290519          0.013   PREDICTED: hypothetical protein XP_002346939 
PRDM16                0.013   PR domain containing 16 isoform 2 
PRDM16                0.013   PR domain containing 16 isoform 1 
SETD2                 0.013   SET domain containing 2 
PELP1                 0.012   proline, glutamic acid and leucine rich protein 1 [...
BRD2                  0.012   bromodomain containing 2 
BRD2                  0.012   bromodomain containing 2 
HECW1                 0.012   NEDD4-like ubiquitin-protein ligase 1 
SLC24A1               0.012   solute carrier family 24 (sodium/potassium/calcium ex...
ZBTB7C                0.012   zinc finger and BTB domain containing 7C 
MYT1                  0.012   myelin transcription factor 1 
RTN1                  0.012   reticulon 1 isoform A 
PRKCSH                0.011   protein kinase C substrate 80K-H isoform 1 
SRCAP                 0.011   Snf2-related CBP activator protein 
HMGB2                 0.011   high-mobility group box 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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