Guide to the Human Genome
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Name: ACTA2 Sequence: fasta or formatted (377aa) NCBI GI: 4501883
Description:

alpha 2 actin

Referenced in:

Actin and Related Proteins

Other entries for this name:
alt mRNA [377aa] alpha 2 actin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         29           2
 C cysteine            1.9          7           1
 D aspartate           5.6         21           2
 E glutamate           7.7         29           3
 F phenylalanine       3.2         12           1
 G glycine             7.4         28           2
 H histidine           2.4          9           2
 I isoleucine          8.0         30           2
 K lysine              5.0         19           1
 L leucine             7.2         27           2
 M methionine          4.2         16           1
 N asparagine          3.2         12           2
 P proline             5.0         19           2
 Q glutamine           2.9         11           2
 R arginine            4.8         18           1
 S serine              6.9         26           4
 T threonine           6.4         24           2
 V valine              5.3         20           1
 W tryptophan          1.1          4           1
 Y tyrosine            4.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 2 actin 
ACTA2                 1.000   alpha 2 actin 
ACTC1                 0.986   cardiac muscle alpha actin 1 proprotein 
ACTG2                 0.985   actin, gamma 2 propeptide 
ACTA1                 0.984   actin, alpha 1, skeletal muscle 
ACTG1                 0.945   actin, gamma 1 propeptide 
ACTB                  0.945   beta actin 
ACTBL2                0.897   actin, beta-like 2 
POTEE                 0.874   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.873   PREDICTED: actin, beta-like 3 
ACTBL3                0.873   PREDICTED: kappa-actin 
LOC653269             0.869   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.869   PREDICTED: similar to protein expressed in prostate,...
ACTBL3                0.868   PREDICTED: actin, beta-like 3 
POTEF                 0.866   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.861   PREDICTED: similar to protein expressed in prostate...
ACTR1B                0.546   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.536   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.489   actin related protein M1 
LOC100128069          0.482   PREDICTED: similar to alpha actin 
LOC100128069          0.469   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTRT1                0.465   actin-related protein T1 
ACTRT2                0.465   actin-related protein M2 
ACTR2                 0.447   actin-related protein 2 isoform b 
ACTR2                 0.442   actin-related protein 2 isoform a 
ACTL7A                0.405   actin-like 7A 
ACTL7B                0.393   actin-like 7B 
ACTL9                 0.372   actin-like 9 
ACTL6B                0.303   actin-like 6B 
ACTR3B                0.303   actin-related protein 3-beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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