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Search of human proteins with 42542405
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42542405 CGI-01 protein isoform 2 [Homo sapiens]
(613 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42542403 CGI-01 protein isoform 1 [Homo sapiens] 1222 0.0
gi|42542405 CGI-01 protein isoform 2 [Homo sapiens] 1222 0.0
gi|55956895 CGI-01 protein isoform 3 [Homo sapiens] 788 0.0
gi|153945707 endothelin converting enzyme 2 isoform C [Homo sapi... 67 5e-11
gi|153945761 endothelin converting enzyme 2 isoform A [Homo sapi... 54 4e-07
gi|63253298 spermidine synthase [Homo sapiens] 47 4e-05
gi|13236559 hypothetical protein LOC79169 [Homo sapiens] 33 0.59
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 33 0.77
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 33 0.77
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 33 0.77
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 33 0.77
gi|116063536 coenzyme Q5 homolog, methyltransferase [Homo sapiens] 32 1.7
gi|222352158 carboxypeptidase 3, cytosolic [Homo sapiens] 32 2.2
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 2.9
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 2.9
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 2.9
gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens] 31 2.9
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 31 2.9
gi|4758404 FSHD region gene 1 [Homo sapiens] 30 6.5
gi|58219056 methyltransferase like 10 [Homo sapiens] 30 6.5
>gi|42542403 CGI-01 protein isoform 1 [Homo sapiens]
Length = 699
Score = 1222 bits (3163), Expect = 0.0
Identities = 613/613 (100%), Positives = 613/613 (100%)
Query: 1 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 60
MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV
Sbjct: 87 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 146
Query: 61 GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA 120
GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA
Sbjct: 147 GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA 206
Query: 121 FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG 180
FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG
Sbjct: 207 FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG 266
Query: 181 SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA 240
SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA
Sbjct: 267 SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA 326
Query: 241 SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV 300
SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV
Sbjct: 327 SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV 386
Query: 301 QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK 360
QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK
Sbjct: 387 QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK 446
Query: 361 KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS 420
KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS
Sbjct: 447 KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS 506
Query: 421 LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR 480
LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR
Sbjct: 507 LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR 566
Query: 481 PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV 540
PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV
Sbjct: 567 PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV 626
Query: 541 LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT 600
LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT
Sbjct: 627 LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT 686
Query: 601 YVLSDMLKTVKIV 613
YVLSDMLKTVKIV
Sbjct: 687 YVLSDMLKTVKIV 699
>gi|42542405 CGI-01 protein isoform 2 [Homo sapiens]
Length = 613
Score = 1222 bits (3163), Expect = 0.0
Identities = 613/613 (100%), Positives = 613/613 (100%)
Query: 1 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 60
MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV
Sbjct: 1 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 60
Query: 61 GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA 120
GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA
Sbjct: 61 GRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFA 120
Query: 121 FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG 180
FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG
Sbjct: 121 FIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLG 180
Query: 181 SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA 240
SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA
Sbjct: 181 SVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAA 240
Query: 241 SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV 300
SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV
Sbjct: 241 SAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTV 300
Query: 301 QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK 360
QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK
Sbjct: 301 QHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRK 360
Query: 361 KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS 420
KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS
Sbjct: 361 KQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGS 420
Query: 421 LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR 480
LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR
Sbjct: 421 LPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEAR 480
Query: 481 PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV 540
PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV
Sbjct: 481 PCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSV 540
Query: 541 LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT 600
LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT
Sbjct: 541 LAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDT 600
Query: 601 YVLSDMLKTVKIV 613
YVLSDMLKTVKIV
Sbjct: 601 YVLSDMLKTVKIV 613
>gi|55956895 CGI-01 protein isoform 3 [Homo sapiens]
Length = 543
Score = 788 bits (2036), Expect = 0.0
Identities = 400/423 (94%), Positives = 402/423 (95%), Gaps = 8/423 (1%)
Query: 191 TGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITV 250
T E TL VD + R + QGRETEWLFGMDEGRKQLAASAGFRRLITV
Sbjct: 129 TDEEEKTLQQVDRMLAEVGR--------VLQGRETEWLFGMDEGRKQLAASAGFRRLITV 180
Query: 251 ALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSG 310
ALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSG
Sbjct: 181 ALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSG 240
Query: 311 DYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDL 370
DYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDL
Sbjct: 241 DYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDL 300
Query: 371 PAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFP 430
PAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFP
Sbjct: 301 PAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFP 360
Query: 431 KSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDV 490
KSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDV
Sbjct: 361 KSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDV 420
Query: 491 DSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPL 550
DSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPL
Sbjct: 421 DSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPL 480
Query: 551 LYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTV 610
LYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTV
Sbjct: 481 LYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTV 540
Query: 611 KIV 613
KIV
Sbjct: 541 KIV 543
Score = 130 bits (326), Expect = 5e-30
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 60
MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV
Sbjct: 87 MKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEV 146
Query: 61 GRVLQ 65
GRVLQ
Sbjct: 147 GRVLQ 151
>gi|153945707 endothelin converting enzyme 2 isoform C [Homo
sapiens]
Length = 255
Score = 67.0 bits (162), Expect = 5e-11
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 11/95 (11%)
Query: 10 PQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEE------KTLQQVDRMLAEVGRV 63
PQ+ + MD+ +++FP ASF VVL+KGTLDA+L E + + + VD++L+EV RV
Sbjct: 105 PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV 164
Query: 64 LQVGGRYLCISLAQAHILKKAVGHFSRE--GWMVR 96
L GGR++ ++ A H + H+++ GW +R
Sbjct: 165 LVPGGRFISMTSAAPHFRTR---HYAQAYYGWSLR 196
>gi|153945761 endothelin converting enzyme 2 isoform A [Homo
sapiens]
Length = 883
Score = 53.9 bits (128), Expect = 4e-07
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 10 PQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEE------KTLQQVDRMLAEVGRV 63
PQ+ + MD+ +++FP ASF VVL+KGTLDA+L E + + + VD++L+EVG
Sbjct: 105 PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVG-- 162
Query: 64 LQVGGRYLCISLAQAHIL 81
Q G R L S Q ++
Sbjct: 163 FQKGTRQLLGSRTQLELV 180
>gi|63253298 spermidine synthase [Homo sapiens]
Length = 302
Score = 47.4 bits (111), Expect = 4e-05
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 388 HKAMIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVA 447
++ MIA L L +P P +L++G G G + V H + EID +++V+
Sbjct: 79 YQEMIANLPLCSHPN-----PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 133
Query: 448 TQW-----FGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCP 502
++ G+S S ++ +H+ DG +++ + + +DVI+ DS DP +G P
Sbjct: 134 KKFLPGMAIGYS-SSKLTLHVGDGFEFMK------QNQDAFDVII--TDSSDP-MG---P 180
Query: 503 PPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGL 536
+ ++S+ Q +K+ L +GV C+ L L
Sbjct: 181 AESLFKESYYQLMKTALKEDGVLCCQGECQWLHL 214
>gi|13236559 hypothetical protein LOC79169 [Homo sapiens]
Length = 263
Score = 33.5 bits (75), Expect = 0.59
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 338 QSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQ------SIDKSYLCCEHHK 389
+ E + K HK +KK KKD++ +RPA+A P +P + D + CC+ K
Sbjct: 186 KKEKKKKKKRKHKKEKK-KKDKEHRRPAEATSSPTSPERPRHHHHDSDSNSPCCKRRK 242
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 33.1 bits (74), Expect = 0.77
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 345 KDVSHKAQKKRKKDRKK-QRPADAEDLPAAPGQSIDK 380
KD K +KKRKK +KK + A+A+ + A PG S+D+
Sbjct: 212 KDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 33.1 bits (74), Expect = 0.77
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 345 KDVSHKAQKKRKKDRKK-QRPADAEDLPAAPGQSIDK 380
KD K +KKRKK +KK + A+A+ + A PG S+D+
Sbjct: 223 KDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 259
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 33.1 bits (74), Expect = 0.77
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 345 KDVSHKAQKKRKKDRKK-QRPADAEDLPAAPGQSIDK 380
KD K +KKRKK +KK + A+A+ + A PG S+D+
Sbjct: 212 KDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 33.1 bits (74), Expect = 0.77
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 345 KDVSHKAQKKRKKDRKK-QRPADAEDLPAAPGQSIDK 380
KD K +KKRKK +KK + A+A+ + A PG S+D+
Sbjct: 231 KDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 267
>gi|116063536 coenzyme Q5 homolog, methyltransferase [Homo sapiens]
Length = 327
Score = 32.0 bits (71), Expect = 1.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 48 KTLQQVDRMLAEVGRVLQVGGRYLCISLAQAH 79
+ + +D+ L E RVL+ GGR+LC+ +Q +
Sbjct: 220 RNVTHIDQALQEAHRVLKPGGRFLCLEFSQVN 251
>gi|222352158 carboxypeptidase 3, cytosolic [Homo sapiens]
Length = 920
Score = 31.6 bits (70), Expect = 2.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 507 VEQSFLQKVKSILTPEGVFILNLVCRDLG--LKDSVLAGLKAVFPLLY-----VRRIEGE 559
+ +F+ KV +L P+GV + N C G L + + LK FP ++ V R+ +
Sbjct: 391 LRDTFVFKVVPMLNPDGVIVGNYRCSLAGRDLNRNYTSLLKESFPSVWYTRNMVHRLMEK 450
Query: 560 VNEILFCQLH 569
IL+C LH
Sbjct: 451 REVILYCDLH 460
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 336 VVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAP--GQSIDKSYLCCEHHKAM-- 391
V+Q+ R L K +KK KK R+K+ A D P G+ ++ S L E +K M
Sbjct: 152 VIQNFKRTLS----KKEKKEKKKREKEALRQASDKDDRPFQGEDVENSRLAAEVYKDMPE 207
Query: 392 IAGLALLRNPELLLE 406
+ + NPE++++
Sbjct: 208 TSFTRTISNPEVVMK 222
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 336 VVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAP--GQSIDKSYLCCEHHKAM-- 391
V+Q+ R L K +KK KK R+K+ A D P G+ ++ S L E +K M
Sbjct: 153 VIQNFKRTLS----KKEKKEKKKREKEALRQASDKDDRPFQGEDVENSRLAAEVYKDMPE 208
Query: 392 IAGLALLRNPELLLE 406
+ + NPE++++
Sbjct: 209 TSFTRTISNPEVVMK 223
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 31.2 bits (69), Expect = 2.9
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 336 VVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAP--GQSIDKSYLCCEHHKAM-- 391
V+Q+ R L K +KK KK R+K+ A D P G+ ++ S L E +K M
Sbjct: 152 VIQNFKRTLS----KKEKKEKKKREKEALRQASDKDDRPFQGEDVENSRLAAEVYKDMPE 207
Query: 392 IAGLALLRNPELLLE 406
+ + NPE++++
Sbjct: 208 TSFTRTISNPEVVMK 222
>gi|31657119 carboxypeptidase 2, cytosolic [Homo sapiens]
Length = 902
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 502 PPPAFVEQSFLQKVKSILTPEGVFILNLVC----RDLGLKDSVLAGLKAVFPLLY----- 552
P + F+ KV +L P+GV + N C RDL + LK FP ++
Sbjct: 484 PDAQLLRDIFVFKVLPMLNPDGVIVGNYRCSLAGRDLNRHYKTI--LKESFPCIWYTRNM 541
Query: 553 VRRIEGEVNEILFCQLH 569
++R+ E +L+C H
Sbjct: 542 IKRLLEEREVLLYCDFH 558
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 31.2 bits (69), Expect = 2.9
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 209 SRDNHFAIFIIPQGRETEWLFGMDEGRKQLA---ASAGFRRLITVALHRGQQYESMDHIQ 265
S +A+ I P G+ +W+ M++ K + + + R++ AL G +++I
Sbjct: 3073 SNSRRWALMIDPHGQANKWIKNMEKANKLAVIKFSDSNYMRMLENALQLGTPV-LIENIG 3131
Query: 266 AELSARVMELAPAGMPTQQQVPFLSVGGDI 295
EL A + + QQ V ++ +G +I
Sbjct: 3132 EELDASIEPILLKATFKQQGVEYMRLGENI 3161
>gi|4758404 FSHD region gene 1 [Homo sapiens]
Length = 258
Score = 30.0 bits (66), Expect = 6.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 331 LSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAE 368
++ + V+S +LK K++KK+ KD+K++R D E
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEE 38
>gi|58219056 methyltransferase like 10 [Homo sapiens]
Length = 291
Score = 30.0 bits (66), Expect = 6.5
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 27 ASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVG 86
+ F + +DKGT DA+ + + +++ + + + RVL+V G +L S ++ +
Sbjct: 145 SGFHICIDKGTFDAISLN-PDNAIEKRKQYVKSLSRVLKVKGFFLITSCNWTK--EELLN 201
Query: 87 HFSREGW 93
FS EGW
Sbjct: 202 EFS-EGW 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,308,901
Number of Sequences: 37866
Number of extensions: 1043083
Number of successful extensions: 3156
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3130
Number of HSP's gapped (non-prelim): 31
length of query: 613
length of database: 18,247,518
effective HSP length: 108
effective length of query: 505
effective length of database: 14,157,990
effective search space: 7149784950
effective search space used: 7149784950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.