Guide to the Human Genome
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Name: SIAH2 Sequence: fasta or formatted (324aa) NCBI GI: 31982899
Description:

seven in absentia homolog 2

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         35           4
 C cysteine            5.9         19           2
 D aspartate           2.8          9           1
 E glutamate           4.6         15           1
 F phenylalanine       3.4         11           2
 G glycine             7.4         24           5
 H histidine           4.6         15           2
 I isoleucine          4.6         15           1
 K lysine              3.4         11           1
 L leucine             8.0         26           2
 M methionine          2.5          8           2
 N asparagine          3.4         11           1
 P proline             9.0         29           3
 Q glutamine           4.6         15           2
 R arginine            3.4         11           3
 S serine              7.7         25           2
 T threonine           5.9         19           2
 V valine              5.2         17           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   seven in absentia homolog 2 
SIAH1                 0.665   seven in absentia homolog 1 isoform b 
SIAH1                 0.665   seven in absentia homolog 1 isoform a 
SIAH3                 0.256   seven in absentia homolog 3 
TRAF7                 0.041   TNF receptor-associated factor 7 
TRIM50                0.039   tripartite motif protein 50A 
PDZRN3                0.036   PDZ domain containing ring finger 3 
RNF114                0.033   zinc finger protein 313 
CDC42EP1              0.032   CDC42 effector protein 1 
VASP                  0.030   vasodilator-stimulated phosphoprotein 
BIRC7                 0.030   livin inhibitor of apoptosis isoform beta 
RNF151                0.030   ring finger protein 151 
TAF4                  0.027   TBP-associated factor 4 
KAT2A                 0.027   general control of amino acid synthesis 5-like 2 [H...
NR2F2                 0.026   nuclear receptor subfamily 2, group F, member 2 isof...
PHOX2A                0.026   paired-like homeobox 2a 
RNF19B                0.026   ring finger protein 19B isoform a 
RNF19B                0.026   ring finger protein 19B isoform b 
EIF3F                 0.026   eukaryotic translation initiation factor 3, subunit 5...
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
BOD1L                 0.024   biorientation of chromosomes in cell division 1-like...
RNF185                0.024   ring finger protein 185 isoform 1 
RNF185                0.024   ring finger protein 185 isoform 1 
BIRC7                 0.024   livin inhibitor of apoptosis isoform alpha 
MIB2                  0.023   mindbomb homolog 2 
SALL3                 0.023   sal-like 3 
RNF166                0.023   ring finger protein 166 
LOC100294444          0.023   PREDICTED: similar to family with sequence similari...
SMARCA2               0.023   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.023   SWI/SNF-related matrix-associated actin-dependent re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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