Guide to the Human Genome
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Name: WDR17 Sequence: fasta or formatted (1322aa) NCBI GI: 31317311
Description:

WD repeat domain 17 isoform 1

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [1298aa] WD repeat domain 17 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         93           3
 C cysteine            3.3         44           2
 D aspartate           6.0         79           2
 E glutamate           5.2         69           2
 F phenylalanine       3.3         44           2
 G glycine             6.4         85           3
 H histidine           3.0         40           1
 I isoleucine          6.7         88           2
 K lysine              5.7         75           2
 L leucine            10.2        135           3
 M methionine          1.7         23           2
 N asparagine          3.9         52           2
 P proline             4.9         65           3
 Q glutamine           3.2         42           1
 R arginine            3.9         51           2
 S serine              7.5         99           3
 T threonine           5.6         74           2
 V valine              6.4         84           2
 W tryptophan          2.6         34           1
 Y tyrosine            3.5         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 17 isoform 1 
WDR17                 0.980   WD repeat domain 17 isoform 2 
TBL1X                 0.037   transducin beta-like 1X isoform b 
TBL1X                 0.037   transducin beta-like 1X isoform b 
TBL1X                 0.037   transducin beta-like 1X isoform a 
TBL1X                 0.037   transducin beta-like 1X isoform a 
TBL1Y                 0.037   transducin beta-like 1Y 
TBL1Y                 0.037   transducin beta-like 1Y 
TBL1Y                 0.037   transducin beta-like 1Y 
TBL1XR1               0.035   transducin (beta)-like 1 X-linked receptor 1 
FBXW7                 0.030   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.030   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.030   F-box and WD repeat domain containing 7 isoform 2 [H...
PEX7                  0.028   peroxisomal biogenesis factor 7 
WDR69                 0.026   WD repeat domain 69 
GEMIN5                0.026   gemin 5 
BTRC                  0.024   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.024   beta-transducin repeat containing protein isoform 1 ...
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.023   F-box and WD repeat domain containing 11 isoform B [...
PAFAH1B1              0.023   platelet-activating factor acetylhydrolase, isoform I...
PRPF4                 0.023   PRP4 pre-mRNA processing factor 4 homolog 
WDR5                  0.023   WD repeat domain 5 
WDR5                  0.023   WD repeat domain 5 
WDR5B                 0.022   WD repeat domain 5B 
TAF5L                 0.021   PCAF associated factor 65 beta isoform a 
NLE1                  0.021   Notchless gene homolog isoform a 
TAF5                  0.020   TBP-associated factor 5 
CDC20                 0.020   cell division cycle 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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