Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TBL1Y Sequence: fasta or formatted (522aa) NCBI GI: 15150805
Description:

transducin beta-like 1Y

Referenced in:

Gene Families
WD Repeat Proteins
Y-linked Genes

Other entries for this name:
alt mRNA [522aa] transducin beta-like 1Y
alt mRNA [522aa] transducin beta-like 1Y
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         44           3
 C cysteine            2.1         11           1
 D aspartate           5.9         31           2
 E glutamate           4.8         25           2
 F phenylalanine       3.3         17           1
 G glycine             7.5         39           2
 H histidine           3.6         19           1
 I isoleucine          5.7         30           2
 K lysine              4.6         24           2
 L leucine             6.7         35           2
 M methionine          2.5         13           1
 N asparagine          5.7         30           2
 P proline             4.2         22           2
 Q glutamine           4.6         24           3
 R arginine            2.3         12           1
 S serine             10.7         56           2
 T threonine           6.1         32           2
 V valine              6.7         35           2
 W tryptophan          2.5         13           1
 Y tyrosine            1.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transducin beta-like 1Y 
TBL1Y                 1.000   transducin beta-like 1Y 
TBL1Y                 1.000   transducin beta-like 1Y 
TBL1X                 0.918   transducin beta-like 1X isoform b 
TBL1X                 0.918   transducin beta-like 1X isoform b 
TBL1X                 0.918   transducin beta-like 1X isoform a 
TBL1X                 0.918   transducin beta-like 1X isoform a 
TBL1XR1               0.852   transducin (beta)-like 1 X-linked receptor 1 
LOC100291233          0.155   PREDICTED: hypothetical protein XP_002346868 
LOC100287918          0.155   PREDICTED: hypothetical protein XP_002342710 
LOC100292902          0.110   PREDICTED: similar to transducin (beta)-like 1 X-li...
WDR69                 0.106   WD repeat domain 69 
WDR51B                0.096   WD repeat domain 51B 
NLE1                  0.096   Notchless gene homolog isoform a 
WDR17                 0.095   WD repeat domain 17 isoform 2 
WDR17                 0.095   WD repeat domain 17 isoform 1 
CIAO1                 0.093   WD repeat domain 39 
WDR5B                 0.092   WD repeat domain 5B 
WDR5                  0.089   WD repeat domain 5 
WDR5                  0.089   WD repeat domain 5 
PAFAH1B1              0.088   platelet-activating factor acetylhydrolase, isoform I...
WDR51A                0.087   WD repeat domain 51A isoform 2 
WDR51A                0.087   WD repeat domain 51A isoform 1 
TAF5                  0.087   TBP-associated factor 5 
WDR51A                0.082   WD repeat domain 51A isoform 3 
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.080   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR38                 0.075   WD repeat domain 38 
SNRNP40               0.075   WD repeat domain 57 (U5 snRNP specific) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press