Guide to the Human Genome
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Name: GDAP1L1 Sequence: fasta or formatted (367aa) NCBI GI: 30581160
Description:

ganglioside-induced differentiation-associated protein 1-like 1

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         30           2
 C cysteine            1.6          6           1
 D aspartate           4.9         18           2
 E glutamate           8.4         31           3
 F phenylalanine       3.8         14           2
 G glycine             4.6         17           2
 H histidine           3.5         13           1
 I isoleucine          4.6         17           2
 K lysine              6.5         24           3
 L leucine            12.8         47           2
 M methionine          2.7         10           1
 N asparagine          2.5          9           2
 P proline             5.7         21           2
 Q glutamine           3.3         12           1
 R arginine            5.2         19           2
 S serine              6.3         23           2
 T threonine           4.4         16           2
 V valine              5.2         19           2
 W tryptophan          2.2          8           2
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ganglioside-induced differentiation-associated prote... 
GDAP1                 0.497   ganglioside-induced differentiation-associated prot...
GDAP1                 0.393   ganglioside-induced differentiation-associated prot...
BRF1                  0.017   transcription initiation factor IIIB isoform 3 [Homo...
BRF1                  0.017   transcription initiation factor IIIB isoform 1 [Homo...
QKI                   0.011   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.011   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.011   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.011   quaking homolog, KH domain RNA binding isoform HQK-5...
STK38L                0.010   serine/threonine kinase 38 like 
REG4                  0.008   regenerating islet-derived family, member 4 isoform...
GSTO1                 0.008   glutathione-S-transferase omega 1 
NAV2                  0.008   neuron navigator 2 isoform 4 
NAV2                  0.008   neuron navigator 2 isoform 3 
NAV2                  0.008   neuron navigator 2 isoform 1 
NAV2                  0.008   neuron navigator 2 isoform 2 
WWC2                  0.008   WW and C2 domain containing 2 
FAM184B               0.007   hypothetical protein LOC27146 
LOC652614             0.007   PREDICTED: similar to MHC class I antigen 
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
MR1                   0.006   major histocompatibility complex, class I-related [Ho...
FAM181B               0.006   hypothetical protein LOC220382 
POSTN                 0.006   periostin, osteoblast specific factor isoform 3 [Ho...
POSTN                 0.006   periostin, osteoblast specific factor isoform 1 [Ho...
LOC653720             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
TRIM40                0.006   tripartite motif-containing 40 
NECAB3                0.004   N-terminal EF-hand calcium binding protein 3 isofor...
NECAB3                0.004   N-terminal EF-hand calcium binding protein 3 isofor...
WWC3                  0.004   WWC family member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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