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Search of human proteins with 122937239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
(886 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 1842 0.0
gi|80861489 unkempt homolog (Drosophila)-like isoform 2 [Homo sa... 395 e-109
gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo s... 186 1e-46
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 54 8e-07
gi|55750053 atrophin-1 [Homo sapiens] 53 1e-06
gi|55750041 atrophin-1 [Homo sapiens] 53 1e-06
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 52 3e-06
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 51 5e-06
gi|73695473 roquin [Homo sapiens] 45 2e-04
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 45 2e-04
gi|151301154 mucin 6, gastric [Homo sapiens] 45 3e-04
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 45 3e-04
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 45 4e-04
gi|118572603 ubinuclein 1 [Homo sapiens] 44 7e-04
gi|118572601 ubinuclein 1 [Homo sapiens] 44 7e-04
gi|15812180 butyrate response factor 1 [Homo sapiens] 44 9e-04
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 44 9e-04
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 43 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 43 0.001
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 43 0.001
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 43 0.001
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 43 0.001
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 42 0.002
gi|14042925 ring finger protein 26 [Homo sapiens] 42 0.003
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 41 0.006
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 41 0.006
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 41 0.006
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 41 0.006
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 41 0.006
gi|156105697 ring finger and CCCH-type zinc finger domains 2 iso... 41 0.006
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 1842 bits (4772), Expect = 0.0
Identities = 886/886 (100%), Positives = 886/886 (100%)
Query: 1 MRPDCNSQKPSQALSIRDTSSKDPWPDIEPQLPATPAAVWGVFTFSWRGAGALGPRRGPR 60
MRPDCNSQKPSQALSIRDTSSKDPWPDIEPQLPATPAAVWGVFTFSWRGAGALGPRRGPR
Sbjct: 1 MRPDCNSQKPSQALSIRDTSSKDPWPDIEPQLPATPAAVWGVFTFSWRGAGALGPRRGPR 60
Query: 61 RLNNKRGAAKRQEDKTMSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQ 120
RLNNKRGAAKRQEDKTMSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQ
Sbjct: 61 RLNNKRGAAKRQEDKTMSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQ 120
Query: 121 CPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGD 180
CPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGD
Sbjct: 121 CPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGD 180
Query: 181 ECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIR 240
ECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIR
Sbjct: 181 ECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIR 240
Query: 241 ELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKP 300
ELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKP
Sbjct: 241 ELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKP 300
Query: 301 PRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTR 360
PRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTR
Sbjct: 301 PRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTR 360
Query: 361 TEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVL 420
TEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVL
Sbjct: 361 TEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVL 420
Query: 421 YMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGE 480
YMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGE
Sbjct: 421 YMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGE 480
Query: 481 SGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILP 540
SGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILP
Sbjct: 481 SGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILP 540
Query: 541 AGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDL 600
AGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDL
Sbjct: 541 AGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDL 600
Query: 601 NEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLS 660
NEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLS
Sbjct: 601 NEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLS 660
Query: 661 SHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGA 720
SHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGA
Sbjct: 661 SHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGA 720
Query: 721 AELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRD 780
AELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRD
Sbjct: 721 AELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRD 780
Query: 781 ALEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHM 840
ALEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHM
Sbjct: 781 ALEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHM 840
Query: 841 QSVKCLKCQEQKRAVLPCQHAALCELCAEGSECPICQPGRAHTLQS 886
QSVKCLKCQEQKRAVLPCQHAALCELCAEGSECPICQPGRAHTLQS
Sbjct: 841 QSVKCLKCQEQKRAVLPCQHAALCELCAEGSECPICQPGRAHTLQS 886
>gi|80861489 unkempt homolog (Drosophila)-like isoform 2 [Homo
sapiens]
Length = 277
Score = 395 bits (1014), Expect = e-109
Identities = 179/244 (73%), Positives = 204/244 (83%), Gaps = 10/244 (4%)
Query: 86 SAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQ 145
+A S +PP Q EKP HY YLKEFRTEQCPLF QHKC QHRP+TCFHWHF+NQ
Sbjct: 10 AALSGSPP---------QTEKPTHYRYLKEFRTEQCPLFSQHKCAQHRPFTCFHWHFLNQ 60
Query: 146 RRRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGI 205
RRRR +RRRDGTFNYSPDVYC+KY+EATG+CP+GDECP+LHRTTGDTER+YHLRYYKTG
Sbjct: 61 RRRRPLRRRDGTFNYSPDVYCSKYNEATGVCPDGDECPYLHRTTGDTERKYHLRYYKTGT 120
Query: 206 CIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQT-TVEGSIEGQSA 264
CIHETD++G+C KNGLHCAFAHGP DLR PV D+RELQA EALQNGQ EG + Q
Sbjct: 121 CIHETDARGHCVKNGLHCAFAHGPLDLRPPVCDVRELQAQEALQNGQLGGGEGVPDLQPG 180
Query: 265 GAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPR 324
AS AMIEKILSE+PRWQ+ +VLG+YKTE C KPPRLCRQGYACP+YHNS+DRRR+PR
Sbjct: 181 VLASQAMIEKILSEDPRWQDANFVLGSYKTEQCPKPPRLCRQGYACPHYHNSRDRRRNPR 240
Query: 325 KHKY 328
+ +Y
Sbjct: 241 RFQY 244
Score = 49.7 bits (117), Expect = 1e-05
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 289 LGNYKTEPCKK-PPRLCRQG--YACPYYHNSKDRRRSP-RKHKYRSSPCPNVKHGDEWGD 344
L ++TE C C Q + C ++H RRR P R+ + P+V
Sbjct: 28 LKEFRTEQCPLFSQHKCAQHRPFTCFHWHFLNQRRRRPLRRRDGTFNYSPDVYCSKYNEA 87
Query: 345 PGKCENGDACQYCHTR---TEQQFHPEIYKSTKC-NDMQQSGSCPR-GPFCAFAHVE--- 396
G C +GD C Y H TE+++H YK+ C ++ G C + G CAFAH
Sbjct: 88 TGVCPDGDECPYLHRTTGDTERKYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGPLDL 147
Query: 397 QPPLSD--DLQPSSAVSS 412
+PP+ D +LQ A+ +
Sbjct: 148 RPPVCDVRELQAQEALQN 165
>gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo
sapiens]
Length = 232
Score = 186 bits (471), Expect = 1e-46
Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 13/217 (5%)
Query: 673 QSENTFLGTSAS-HGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSG--------PGAAEL 723
+SE LG++AS + LGLNG+ SIW+ F SGSFSP SP +G P AEL
Sbjct: 11 RSEPGTLGSAASSYSPLGLNGVPGSIWD-FVSGSFSPSPSPILSAGPPSSSSASPNGAEL 69
Query: 724 ARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALE 783
AR+R++LDEA I+QWEESW+Q KQ CDAW++EA+EA ERA A ++ +LA ++++ +E
Sbjct: 70 ARVRRQLDEAKRKIRQWEESWQQVKQVCDAWQREAQEAKERARVADSDRQLALQKKEEVE 129
Query: 784 VQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSV 843
QVK+LQEELE L L D+ + L L+SLQ QLR LE VD +F +++
Sbjct: 130 AQVKQLQEELEGLGVASTLPGLRGCGDIGTIPLPKLHSLQSQLRLDLEAVDGVIFQLRAK 189
Query: 844 KCLKCQEQKRAVL--PCQHAALCELC-AEGSECPICQ 877
+C+ C+E+ + PCQH LCE C A ECP C+
Sbjct: 190 QCVACRERAHGAVLRPCQHHILCEPCAATAPECPYCK 226
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 53.5 bits (127), Expect = 8e-07
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 293 KTEPCKKPPR-LCRQGYACPYYHNSKDRRRSPRKHKYR------SSPCPNVKHGDE---- 341
KT CK R LC++G C + H D + P + Y + CP + E
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEY-DMTKMPECYFYSKFGECSNKECPFLHIDPESKIK 122
Query: 342 ---WGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH---- 394
W D G C++G C++ HTR + + G CP GP C F H
Sbjct: 123 DCPWYDRGFCKHGPLCRHRHTRRVICVNYLV------------GFCPEGPSCKFMHPRFE 170
Query: 395 -----VEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVP 431
EQPPL QP + +P G + S+AG+ P
Sbjct: 171 LPMGTTEQPPLPQQTQPPAKQRTPQVIGVMQSQNSSAGNRGP 212
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 52.8 bits (125), Expect = 1e-06
Identities = 80/332 (24%), Positives = 122/332 (36%), Gaps = 47/332 (14%)
Query: 366 HPEIYKSTKCNDMQQSGSCPRGPFCAFA------HVEQPPLSDDLQPSSAVSSPTQPGPV 419
HP++Y + P+G A + + PP + + SS+ +S P
Sbjct: 216 HPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKP 275
Query: 420 LYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPG 479
P G ++P +P + P ++ L +L +N SPPG +P L G + P
Sbjct: 276 PTTP-VGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQP--LPGHL-PS 331
Query: 480 ESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGIL 539
+ G PG E+ + PHSL P S P
Sbjct: 332 PHAMGQGMGGLPPGPEKGPTLAPS------------PHSLPPASSSAP------------ 367
Query: 540 PAGSPLTSSISSSITSSLAATPPSPVGTSSV-PGMNANALPFYPTSDTVESVIESALDDL 598
P+ SSS +SS AA+ S +SS P + ALP YP S + + +
Sbjct: 368 --APPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPP 425
Query: 599 DLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSA-PVNIPGSLGSSASFHSASPSPPV 657
+ + + + + P P G L S+A P P S G+ ++ H PPV
Sbjct: 426 KYTQPSLPS-QAVWSQGPPPPP---PYGRLLANSNAHPGPFPPSTGAQSTAH-----PPV 476
Query: 658 SLSSHFLQQPQGHLSQSENTFLGTSASHGSLG 689
S H QQ Q Q + HG+ G
Sbjct: 477 STHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 52.8 bits (125), Expect = 1e-06
Identities = 80/332 (24%), Positives = 122/332 (36%), Gaps = 47/332 (14%)
Query: 366 HPEIYKSTKCNDMQQSGSCPRGPFCAFA------HVEQPPLSDDLQPSSAVSSPTQPGPV 419
HP++Y + P+G A + + PP + + SS+ +S P
Sbjct: 216 HPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKP 275
Query: 420 LYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPG 479
P G ++P +P + P ++ L +L +N SPPG +P L G + P
Sbjct: 276 PTTP-VGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQP--LPGHL-PS 331
Query: 480 ESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGIL 539
+ G PG E+ + PHSL P S P
Sbjct: 332 PHAMGQGMGGLPPGPEKGPTLAPS------------PHSLPPASSSAP------------ 367
Query: 540 PAGSPLTSSISSSITSSLAATPPSPVGTSSV-PGMNANALPFYPTSDTVESVIESALDDL 598
P+ SSS +SS AA+ S +SS P + ALP YP S + + +
Sbjct: 368 --APPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPP 425
Query: 599 DLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSA-PVNIPGSLGSSASFHSASPSPPV 657
+ + + + + P P G L S+A P P S G+ ++ H PPV
Sbjct: 426 KYTQPSLPS-QAVWSQGPPPPP---PYGRLLANSNAHPGPFPPSTGAQSTAH-----PPV 476
Query: 658 SLSSHFLQQPQGHLSQSENTFLGTSASHGSLG 689
S H QQ Q Q + HG+ G
Sbjct: 477 STHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 51.6 bits (122), Expect = 3e-06
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
Query: 342 WGDPGKCENGDACQYCHTRTEQQF---HPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQP 398
+ + G+C G CQ+ H E + HP+ YK+ C+ G CP G C F H
Sbjct: 112 FSESGRCRYGAKCQFAHGLGELRQANRHPK-YKTELCHKFYLQGRCPYGSRCHFIH---- 166
Query: 399 PLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNL 458
PS +++P P PVL + +SP P L+ +SS SPS+
Sbjct: 167 ------NPSEDLAAPGHP-PVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSF-SPSS- 217
Query: 459 CGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPG 493
SPP PG+ L+P ++ APG
Sbjct: 218 --SPPP-------------PGDLPLSPSAFSAAPG 237
Score = 49.7 bits (117), Expect = 1e-05
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 21/191 (10%)
Query: 285 TAYVLGNYKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEW 342
T+ YKTE C+ CR G C + H + R++ R KY++ C ++
Sbjct: 97 TSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELC------HKF 150
Query: 343 GDPGKCENGDACQYCHTRTEQ---QFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPP 399
G+C G C + H +E HP + + + SG P A P
Sbjct: 151 YLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLA---GPS 207
Query: 400 LSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHA-PDLSALLCRNSSLGSPSNL 458
LS S SSP PG + PSA +P +P A D + + C + +P ++
Sbjct: 208 LSS--SSFSPSSSPPPPGDLPLSPSA----FSAAPGTPLARRDPTPVCCPSCRRATPISV 261
Query: 459 CGSPPGSIRKP 469
G G +R P
Sbjct: 262 WGPLGGLVRTP 272
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 50.8 bits (120), Expect = 5e-06
Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 43/188 (22%)
Query: 293 KTEPCKKPPR-LCRQGYACPYYHNSKDRRRSPRKHKYR------SSPCPNVKHGDE---- 341
KT CK R LC++G C + H D + P + Y + CP + E
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEY-DMTKMPECYFYSKFGECSNKECPFLHIDPESKIK 122
Query: 342 ---WGDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH---- 394
W D G C++G C++ HTR + + G CP GP C F H
Sbjct: 123 DCPWYDRGFCKHGPLCRHRHTRRVICVNYLV------------GFCPEGPSCKFMHPRFE 170
Query: 395 -----VEQPPLSDDLQPSSAVSS--PTQPGPVLYMPSAAGDSVPVSPSSPHAPD-LSALL 446
EQPPL QP + S+ P Q L ++ SP+ P + +
Sbjct: 171 LPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNS----SPNQQRTPQVIGVMQ 226
Query: 447 CRNSSLGS 454
+NSS G+
Sbjct: 227 SQNSSAGN 234
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 45.4 bits (106), Expect = 2e-04
Identities = 55/200 (27%), Positives = 75/200 (37%), Gaps = 54/200 (27%)
Query: 370 YKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDS 429
YK+ C DM+Q G CPRG C FAH + ++L+ ++
Sbjct: 414 YKTYMCRDMKQRGGCPRGASCTFAHSQ-----EELEKFRKMNKRL--------------- 453
Query: 430 VPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSI----RKPPNL-EGIVFPG----- 479
VP P LSA L + + +G PS G++ RKPP L GIV G
Sbjct: 454 VPRRP-------LSASLGQLNEVGLPSAAILPDEGAVDLPSRKPPALPNGIVSTGNTVTQ 506
Query: 480 ----------ESGLAPGSY----KKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQE 525
+S L PG APG + E + + PHS+ PR
Sbjct: 507 LIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPD---LLESVPKSISALPVNPHSIPPRGPA 563
Query: 526 QPLLQPKQDMLGILPAGSPL 545
P L ++P GS L
Sbjct: 564 DLPPMPVTKPLQMVPRGSQL 583
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 45.4 bits (106), Expect = 2e-04
Identities = 57/215 (26%), Positives = 77/215 (35%), Gaps = 47/215 (21%)
Query: 304 CRQGYACPYYHNSKDRRRSPR----KHKYRSSPCPNVKHGDEWGDP-------GKCENGD 352
C +G CPY H+ + R K CP H + P G C N +
Sbjct: 682 CNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSN 741
Query: 353 ACQYCHTRTEQQ----------FHPEIYKSTK-----CNDMQQSGSCPRGPFCAFAHVEQ 397
C Y H ++ + P K K C D + G+CPRG C H Q
Sbjct: 742 -CPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHTLLCPDFARRGACPRGAQCQLLHRTQ 800
Query: 398 ------------PPLSDDLQPS--SAVSSPTQPG----PVLYMPSAAGDSVPVSPSSPHA 439
P SD S SA P +P P PS+A + + PH
Sbjct: 801 KRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPTRQTPSSAALTAAAVAAPPHC 860
Query: 440 PDLSALLCRNSSLGSPSNLCGSPPGSI-RKPPNLE 473
P SA +S S S+ SPP S+ + P+L+
Sbjct: 861 PGGSA-SPSSSKASSSSSSSSSPPASLDHEAPSLQ 894
Score = 32.0 bits (71), Expect = 2.6
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 24/171 (14%)
Query: 174 GLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHDLR 233
G CP G +C LHRT ++ H R T +D+ + +HGP
Sbjct: 785 GACPRGAQCQLLHRT-----QKRHSRRAATSPAPGPSDATARS-----RVSASHGPRKPS 834
Query: 234 SPVYDIRELQAMEALQ----------NGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQ 283
+ R+ + AL G + S + S+ ++S + + E P Q
Sbjct: 835 ASQRPTRQTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQ 894
Query: 284 ETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCP 334
E A + CK P + Q P ++ R R+PR + S P
Sbjct: 895 EAA-LAAACSNRLCKLPSFISLQSSPSP---GAQPRVRAPRAPLTKDSGKP 941
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 45.1 bits (105), Expect = 3e-04
Identities = 83/333 (24%), Positives = 130/333 (39%), Gaps = 30/333 (9%)
Query: 406 PSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSA-----LLCRNSSLGSPSNLCG 460
P + +S T P + + S+P SS H P+++ + +++S G+ + +
Sbjct: 1894 PMTPTTSGTSQSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITPKHTSTGTRTPVAH 1953
Query: 461 SPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLE 520
+ S + P P +G +P S P Q Y Q L H +
Sbjct: 1954 TTSASSSRLPTPFTTHSP-PTGSSPFS-STGPMTATSFQTTTTYPTPSHPQTTLPTH-VP 2010
Query: 521 PRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPF 580
P S L+ P + I T S+SI S+ T P P T G A P
Sbjct: 2011 PFSTS--LVTPSTHTVIITTHTQMAT---SASIHSTPTGTVPPPT-TLKATGSTHTAPPM 2064
Query: 581 YPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIG-GSLLQSSAPVNIP 639
T+ S + F ++ ++S+ P IT L ++ PV+
Sbjct: 2065 TVTTSGTSQTHSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTT 2124
Query: 640 GSLGSSASFHSASPSPPVSLSSHFLQQPQGHLS-QSENTFLGTSAS------HGSLGLNG 692
L SS S SPS P ++SS+ P H S Q+ + +GTS+S H + +G
Sbjct: 2125 NQLSSS---FSPSPSAPSTVSSYV---PSSHSSPQTSSPSVGTSSSFVSAPVHSTTLSSG 2178
Query: 693 MNSSIWEHFASGSFSPGTSPAFLSGPGAAELAR 725
+SS+ H + S S SP F S P A+ R
Sbjct: 2179 SHSSLSTHPTTASVS--ASPLFPSSPAASTTIR 2209
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 45.1 bits (105), Expect = 3e-04
Identities = 121/506 (23%), Positives = 188/506 (37%), Gaps = 88/506 (17%)
Query: 414 TQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLE 473
T P P+ P AA +P +P +S+L+ G P+ P PP
Sbjct: 6 TLPVPLEPAPEAA-----TAPQAPVMGSVSSLISGRPCPGGPA------PPRHHGPPG-- 52
Query: 474 GIVFPGESGLAPGSYKK-------APGFEREDQVGAEYL-KNFKCQAKLKPHS-----LE 520
F + GL G Y+ P + Y+ ++F+ ++ P S E
Sbjct: 53 PTFFRQQDGLLRGGYEAQEPLCPAVPPRKAVPVTSFTYINEDFRTESPPSPSSDVEDARE 112
Query: 521 PRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATP--PSPVGTSSVP------- 571
R+ L P ++ P L ++ + A P P P G S+P
Sbjct: 113 QRAHNAHLRGPPPKLI---PVSGKLEKNMEKILIRPTAFKPVLPKPRGAPSLPSFMGPRA 169
Query: 572 ----GMNANALPFY--PTSDTVESVIESALDD-LDLNEFGVAALEKTFDNSTVPHPGSI- 623
G + + P S + S SA D L + + T +S S+
Sbjct: 170 TGLSGSQGSLTQLFGGPASSSSSSSSSSAADKPLAFSGWASGCPSGTLSDSGRNSLSSLP 229
Query: 624 --TIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENT-FLG 680
+ GG+ +S+P G L S S A P P + + G S S++T LG
Sbjct: 230 TYSTGGAEPTTSSP---GGHLPSHGSGRGALPGPARGVPTGPSHSDSGRSSSSKSTGSLG 286
Query: 681 TSASHGSLGLNGMNSSIWEHFASGSFSPGTSP----------AFLSGP---GAAELARLR 727
+ G LG +G +S + + G SP P L G AEL +LR
Sbjct: 287 GRVAGGLLG-SGTRASP-DSSSCGERSPPPPPPPPSDEALLHCVLEGKLRDREAELQQLR 344
Query: 728 QELDEANSTIKQ-WEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDALEVQV 786
LDE +T+ Q +EE + W++E E E + A+ + A+ + L++QV
Sbjct: 345 DSLDENEATMCQAYEERQRH-------WQREREALREDCA---AQAQRAQRAQQLLQLQV 394
Query: 787 KKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCL 846
+LQ+E +L Q L LE +TL Q++L LE+ V L
Sbjct: 395 FQLQQEKRQLQ-DDFAQLLQEREQLER-RCATLEREQRELGPRLEETKWEVCQKSGEISL 452
Query: 847 KCQEQKRAVLPCQHAALCELCAEGSE 872
Q+ K + EL +GSE
Sbjct: 453 LKQQLKE--------SQAELVQKGSE 470
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 44.7 bits (104), Expect = 4e-04
Identities = 80/347 (23%), Positives = 128/347 (36%), Gaps = 41/347 (11%)
Query: 395 VEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGS 454
+E P L+ S+ SP+ +L +PS +++ VS P + R
Sbjct: 456 LESFPSQAKLRESTPGDSPSTVNKLLQLPSTTIENISVSVHQPQPKHIKLAKRRIPPASK 515
Query: 455 -PSNLCGSPPGSIRKPPNLE--GIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQ 511
P++ P + N++ + F E L+ + AP E +Q+
Sbjct: 516 IPASAVEMPGSADVTGLNVQFGALEFGSEPSLS--EFGSAPSSENSNQI----------- 562
Query: 512 AKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
P SL +S +P L M + + TS I+S +S + SPV SS
Sbjct: 563 ----PISLYSKSLSEP-LNTSLSMTSAVQNSTYTTSVITSCSLTSSSLNSASPVAMSSSY 617
Query: 572 GMNA--NALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSL 629
++ N +P+ + ES + +N G ++T D P S S
Sbjct: 618 DQSSVHNRIPYQSPVSSSESAPGTI-----MNGHGGGRSQQTLDTPKTTGPPSALPSVSS 672
Query: 630 LQSSAPVNIPGSLGSSASFHSAS-PSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSL 688
L S+ +L S S H+ S P+S S L Q LS TS +H S+
Sbjct: 673 LPSTTSCT---ALLPSTSQHTGDLTSSPLSQLSSSLSSHQSSLSAHAALSSSTSHTHASV 729
Query: 689 GLNGMNSSIWEHFASGSFSPGTSPAFLSGPGAAELARLRQELDEANS 735
S H +S +FS + S A L+ ++ ANS
Sbjct: 730 ------ESASSHQSSATFSTAATSVSSSASSGASLS---SSMNTANS 767
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 43.9 bits (102), Expect = 7e-04
Identities = 71/321 (22%), Positives = 111/321 (34%), Gaps = 50/321 (15%)
Query: 400 LSDDL--QPSSAVSSPTQPGPVLYMPSAAGDSVPV-SPSSPHAPDLSALLCRNS--SLGS 454
L +DL P+S+V + ++ L +A + +PS A + +LC +
Sbjct: 661 LDEDLIRNPASSVEAVSKELAALNSRAAGNSEFTLPAPSKAPAEKVGGVLCTEEKRNFAK 720
Query: 455 PSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKL 514
PS P S++ P N F E LA G + E + + K CQA L
Sbjct: 721 PSPSAPPPASSLQSPLN-----FLAEQALALGQSSQ------EKKPESSGYKELSCQAPL 769
Query: 515 K---PHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
P + +++ L + +P P + TPPSP + +
Sbjct: 770 NKGLPEVHQSKAKHHSLPRTSHGPQVAVPVPGPQVKVFHAGTQQQKNFTPPSPFA-NKLQ 828
Query: 572 GMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQ 631
G A+ + + + L KT HP + G L
Sbjct: 829 GPKASPTQCHRS---------------------LLQLVKTAAKGQGFHPSAPATSGGLSA 867
Query: 632 SSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLN 691
SS+ + + SSA H A P S S + P G+S+S G+
Sbjct: 868 SSSSSHKTPASSSSALSHPAKPHSVSSAGSSYKNNPFASSISKHGVSSGSSSSGGT---- 923
Query: 692 GMNSSIWEHFASGSFSPGTSP 712
+ SS+ SGS PG P
Sbjct: 924 PVQSSV-----SGSLVPGIQP 939
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 43.9 bits (102), Expect = 7e-04
Identities = 71/321 (22%), Positives = 111/321 (34%), Gaps = 50/321 (15%)
Query: 400 LSDDL--QPSSAVSSPTQPGPVLYMPSAAGDSVPV-SPSSPHAPDLSALLCRNS--SLGS 454
L +DL P+S+V + ++ L +A + +PS A + +LC +
Sbjct: 661 LDEDLIRNPASSVEAVSKELAALNSRAAGNSEFTLPAPSKAPAEKVGGVLCTEEKRNFAK 720
Query: 455 PSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKL 514
PS P S++ P N F E LA G + E + + K CQA L
Sbjct: 721 PSPSAPPPASSLQSPLN-----FLAEQALALGQSSQ------EKKPESSGYKELSCQAPL 769
Query: 515 K---PHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
P + +++ L + +P P + TPPSP + +
Sbjct: 770 NKGLPEVHQSKAKHHSLPRTSHGPQVAVPVPGPQVKVFHAGTQQQKNFTPPSPFA-NKLQ 828
Query: 572 GMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQ 631
G A+ + + + L KT HP + G L
Sbjct: 829 GPKASPTQCHRS---------------------LLQLVKTAAKGQGFHPSAPATSGGLSA 867
Query: 632 SSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLN 691
SS+ + + SSA H A P S S + P G+S+S G+
Sbjct: 868 SSSSSHKTPASSSSALSHPAKPHSVSSAGSSYKNNPFASSISKHGVSSGSSSSGGT---- 923
Query: 692 GMNSSIWEHFASGSFSPGTSP 712
+ SS+ SGS PG P
Sbjct: 924 PVQSSV-----SGSLVPGIQP 939
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 43.5 bits (101), Expect = 9e-04
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 44/185 (23%)
Query: 346 GKCENGDACQYCHTRTEQQF---HPEIYKSTKCNDMQQSGSCPRGPFCAFAH-------- 394
G C+ GD CQ+ H E + HP+ YK+ C G CP GP C F H
Sbjct: 127 GACKYGDKCQFAHGIHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL 185
Query: 395 -------VEQPPLSDDLQ----PSSA--------VSSPTQ--PGPVLYMPSAAGD-SVPV 432
++P L PS+A + SPT P P+L G ++P
Sbjct: 186 AGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPD 245
Query: 433 SPSSPHA---PDLSALLCRNSSL---GSPSNLCGSP----PGSIRKPPNLEGIVFPGESG 482
++P A +L++L + L GSP+ P P PP+ + + E
Sbjct: 246 GTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGY 305
Query: 483 LAPGS 487
L+ S
Sbjct: 306 LSSSS 310
Score = 37.0 bits (84), Expect = 0.081
Identities = 62/262 (23%), Positives = 89/262 (33%), Gaps = 64/262 (24%)
Query: 201 YKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVEGSIE 260
YKT +C + G C K G C FAHG H+LRS
Sbjct: 115 YKTELC-RPFEENGAC-KYGDKCQFAHGIHELRS-------------------------- 146
Query: 261 GQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRL--CRQGYACPYYHNSKD 318
L+ P+ YKTE C+ + C G C + HN+++
Sbjct: 147 ---------------LTRHPK----------YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Query: 319 RRRSPRKHKYRSSPCPNVKHGDEW-GDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCND 377
RR S+ P ++H + G P A + T P + +D
Sbjct: 182 RRALAGARDL-SADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPIL----SADD 236
Query: 378 MQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSP 437
+ S + P G FA Q L+ PS + P L+ P + + SP SP
Sbjct: 237 LLGSPTLPDGTNNPFAFSSQ-ELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSP 295
Query: 438 H--APDLSALLCRNSSLGSPSN 457
D L +SS S S+
Sbjct: 296 QDSLSDQEGYLSSSSSSHSGSD 317
Score = 30.0 bits (66), Expect = 9.9
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 166 CTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRY--YKTGICIHETDSKGNCTKNGLHC 223
C ++E G C GD+C F H G E R R+ YKT +C + G C G C
Sbjct: 120 CRPFEE-NGACKYGDKCQFAH---GIHELRSLTRHPKYKTELC-RTFHTIGFC-PYGPRC 173
Query: 224 AFAHGPHDLRS 234
F H + R+
Sbjct: 174 HFIHNAEERRA 184
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 43.5 bits (101), Expect = 9e-04
Identities = 84/374 (22%), Positives = 124/374 (33%), Gaps = 65/374 (17%)
Query: 406 PSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPD--LSALLCRNSSLGSPSNLCGSPP 463
P S+ S+ T P + + SSP +PD LS +S + S S P
Sbjct: 1154 PISSGSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRP 1213
Query: 464 GSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSL---- 519
GS FPG + + S + + L P S
Sbjct: 1214 GSTHTT------AFPGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGPESTTFHS 1267
Query: 520 EPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSIT-------------SSLAATPPSPVG 566
P S E LL G+L A +P+ SS S T S+ + PS
Sbjct: 1268 SPGSTETTLLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSSKD 1327
Query: 567 TSSVPGMNANALPFYPT------SDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHP 620
T P +A T S T + ++ L +E +T P P
Sbjct: 1328 TMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSP 1387
Query: 621 GSITIGGSLLQSSAPVNIPGSLGS---------------SASFHSASP---SPPVSLSSH 662
T G + +S+A + PGS + S + HS++ S P S +S
Sbjct: 1388 ARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSA 1447
Query: 663 FLQQPQGHLSQ----------SENTFLGTS----ASHGSLGLNGMNSSIWEHFASGSFSP 708
+++P + S +T G S ASH S NG+ SG +
Sbjct: 1448 LVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPDTNGITPLPAHFTTSGRIAE 1507
Query: 709 GTSPAFLSGPGAAE 722
T+ F PG+ E
Sbjct: 1508 STT--FYISPGSME 1519
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 529 LQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVE 588
L P + +L G P TS ISS T + A G+++ G++ + FY + + +
Sbjct: 1136 LFPTRSATSVL-VGEPTTSPISSGSTETTALP-----GSTTTAGLSEKSTTFYSSPRSPD 1189
Query: 589 SVIESA-LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSAS 647
+ + A ++E + + T PGS T+ G +S+A + PGS ++ S
Sbjct: 1190 TTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLS 1249
Query: 648 FHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFS 707
S + S S+ F P +E T L + + L + +S H ++GS
Sbjct: 1250 PGSTTASSLGPESTTFHSSP----GSTETTLLPDNTTASGL----LEASTPVHSSTGSPH 1301
Query: 708 PGTSPA 713
SPA
Sbjct: 1302 TTLSPA 1307
Score = 39.3 bits (90), Expect = 0.016
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 16/203 (7%)
Query: 518 SLEPRSQEQPLLQPKQDMLG--ILPAGSP----LTSSISSSITSSLAATPPSPVGTSSVP 571
++ RS+E D + +LPAGS + S S I+S T P G+++ P
Sbjct: 59 TISGRSEESKASHSSPDAMATTVLPAGSTPSVLVGDSTPSPISSGSMETTALP-GSTTKP 117
Query: 572 GMNANALPFYPTSDTVESV-IESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLL 630
G++ + FY + + ++ + +++ ++E + + T PGS T+ G
Sbjct: 118 GLSEKSTTFYSSPRSPDTTHLPASMTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQ 177
Query: 631 QSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGL 690
+S+A + PG ++ S S + S + F +P +E T L + + L
Sbjct: 178 ESTASHSSPGPTDTTLSPGSTTASSLGPEYTTFHSRP----GSTETTLLPDNTTASGL-- 231
Query: 691 NGMNSSIWEHFASGSFSPGTSPA 713
+ +S+ H ++ S SPA
Sbjct: 232 --LEASMPVHSSTRSPHTTLSPA 252
Score = 31.6 bits (70), Expect = 3.4
Identities = 82/376 (21%), Positives = 133/376 (35%), Gaps = 67/376 (17%)
Query: 411 SSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPP 470
S+P+ ++ P++ S P S ++ H PD S R+ + S+ G+I P
Sbjct: 357 SAPSTTSALVEEPTSYHSS-PGSTATTHFPDSSTTSGRSEE-STASHSSQDATGTIVLPA 414
Query: 471 NLEGIVFPGESGLAP---GSYKKA--PGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQE 525
V GES +P GS + PG + +E F + +L P S
Sbjct: 415 RSTTSVLLGESTTSPISSGSMETTALPGSTTTPGL-SERSTTFHSSPRSPATTLSPASTT 473
Query: 526 QPLLQPKQDMLGILPAGSPLTSSISSSITSSLA---ATPPSPVGTSSVPGMNANALPFYP 582
+ + P + T+ S+ T L+ T S G++ + A+ P
Sbjct: 474 SSGVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGP 533
Query: 583 TSDTVESVIESALDDLDLNEFGVAALEKTFDNSTV-PHPGSI--------TIGGSLLQSS 633
+ ++ S S D L+ AL +++T +PGS T ++++S
Sbjct: 534 SQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGSTHTTLFPDSTTSSGIVEAS 593
Query: 634 APVNI----------------PGSLGSSASF--HSAS----PSPP------VSLSSHFLQ 665
V+ PG G S +F H AS PSPP V S+ + +
Sbjct: 594 TRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHR 653
Query: 666 QP--------------QGH-----LSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSF 706
P GH + S GT+ S +G S + GS
Sbjct: 654 SPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGST 713
Query: 707 SPGTSPAFLSGPGAAE 722
T P + PG +E
Sbjct: 714 EITTLPGSTTTPGLSE 729
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 43.1 bits (100), Expect = 0.001
Identities = 75/317 (23%), Positives = 117/317 (36%), Gaps = 53/317 (16%)
Query: 398 PPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSN 457
P S ++ ++ S T PG S + SP SP A LS +S + S
Sbjct: 863 PISSGSMETTALPGSTTTPGL-----SERSTTFHSSPRSP-ATTLSPASTTSSGVSEEST 916
Query: 458 LCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPH 517
S PGS FP + PG R H
Sbjct: 917 TSHSRPGSTHTT------AFPDST--------TTPGLSRHSTTS---------------H 947
Query: 518 SLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANA 577
S P S + LL P ++ G P TS ISS T + A G+++ G++ +
Sbjct: 948 S-SPGSTDTTLL-PASTTTXLV--GEPTTSPISSGSTETTALP-----GSTTTAGLSEKS 998
Query: 578 LPFYPTSDTVESVIESA-LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPV 636
FY + + ++ + A ++E + + T PGS T+ G +S+A
Sbjct: 999 TTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASH 1058
Query: 637 NIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSS 696
+ PGS ++ S S + S S+ F P +E T L + + L + +S
Sbjct: 1059 SSPGSTDTTLSPRSTTASSLGPESTTFHSGP----GSTETTLLPDNTTASGL----LEAS 1110
Query: 697 IWEHFASGSFSPGTSPA 713
H ++GS SPA
Sbjct: 1111 TPVHSSTGSPRTTLSPA 1127
Score = 39.3 bits (90), Expect = 0.016
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 16/203 (7%)
Query: 518 SLEPRSQEQPLLQPKQDMLG--ILPAGSP----LTSSISSSITSSLAATPPSPVGTSSVP 571
++ RS+E D + +LPAGS + S S I+S T P G+++ P
Sbjct: 493 TISGRSEESKASHSSPDAMATTVLPAGSTPSVLVGDSTPSPISSGSMETTALP-GSTTKP 551
Query: 572 GMNANALPFYPTSDTVESV-IESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLL 630
G++ + FY + + ++ + +++ ++E + + T PGS T+ G
Sbjct: 552 GLSEKSTTFYSSPRSPDTTHLPASMTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQ 611
Query: 631 QSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGL 690
+S+A + PG ++ S S + S + F +P +E T L + + L
Sbjct: 612 ESTASHSSPGPTDTTLSPGSTTASSLGPEYTTFHSRP----GSTETTLLPDNTTASGL-- 665
Query: 691 NGMNSSIWEHFASGSFSPGTSPA 713
+ +S+ H ++ S SPA
Sbjct: 666 --LEASMPVHSSTRSPHTTLSPA 686
Score = 37.4 bits (85), Expect = 0.062
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 542 GSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESA-LDDLDL 600
G P TS I+S+ + A G+++ G++ + FY + + + + A +
Sbjct: 171 GEPKTSPITSASMETTALP-----GSTTTAGLSEKSTTFYSSPRSPDRTLSPARTTSSGV 225
Query: 601 NEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLS 660
+E + + T+ P S T+ G +S+A +IPGS ++ S + +PS S
Sbjct: 226 SEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSLGPES 285
Query: 661 SHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPA 713
+ F P ++ T L + + L + +S H ++GS SPA
Sbjct: 286 TTFHSSP----GYTKTTRLPDNTTTSGL----LEASTPVHSSTGSPHTTLSPA 330
Score = 32.0 bits (71), Expect = 2.6
Identities = 70/309 (22%), Positives = 110/309 (35%), Gaps = 50/309 (16%)
Query: 407 SSAVSSPTQPGPV------LYMPSAAGDSVPVSPSSPHAPDLSALLCRN----SSLGSPS 456
SS V+ T P P L S A S P S + H P+ S R+ +S S +
Sbjct: 1196 SSPVAPATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTT 1255
Query: 457 NLCGSPPGSIR-----------KPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYL 505
+ SPP + P ++ FP S + S + D G L
Sbjct: 1256 HTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPDTNGITPL 1315
Query: 506 K-NFKCQAKLKPHS---LEPRSQEQPL--------LQPKQDMLGILPAGSPLTSSISSSI 553
+F ++ + + P S E L L K +L T S +S
Sbjct: 1316 PAHFTTSGRIAESTTFYISPGSMETTLASTATTPGLSAKSTILYSSSRSPDQTLSPASMT 1375
Query: 554 TSSLAATPPS-------------PVGTSSVPGMNANALPFYPTSDTVESVIE--SALDDL 598
+SS++ P S P T++ G++ + F+ + E+ + S
Sbjct: 1376 SSSISGEPTSLYSQAESTHTTAFPASTTT-SGLSQESTTFHSKPGSTETTLSPGSITTSS 1434
Query: 599 DLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVS 658
EF + STV P S T+ G +S+ + PGS ++A HS + S
Sbjct: 1435 FAQEFTTPHSQPGSALSTVS-PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQ 1493
Query: 659 LSSHFLQQP 667
S+ F P
Sbjct: 1494 QSTPFPDSP 1502
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.1 bits (100), Expect = 0.001
Identities = 81/343 (23%), Positives = 131/343 (38%), Gaps = 39/343 (11%)
Query: 397 QPPLSDDLQPSSAVSSPT----QPGPVLYMP-SAAGDSVPVSPSSPHAPDLSALLCRNSS 451
QP + P S+ S T QPGP L P S A P+S ++ +P S ++
Sbjct: 18 QPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTP 77
Query: 452 LGSP----SNLCGSPPGSIRKPPN-LEGIVFP--GESGLAPGSYKKAPGFEREDQVGAEY 504
L P S+ P G+ + P L ++ P + LA S AP + A
Sbjct: 78 LEVPFPQSSSGTALPLGTAPEAPTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPL 137
Query: 505 LKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSP 564
L PHS++ S P L + + +GS +T +S+ I S T +
Sbjct: 138 -----ALVALAPHSVQKSSAFPPNLLTSPPSVAVAESGSVIT--LSAPIAPSEPKTNLNK 190
Query: 565 VGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTV----PHP 620
V + VP N P P V +V + + + GVA+L +T +T+ P
Sbjct: 191 VPSEVVP--NPKGTPSPPC--IVSTVPYHCVTPMASIQSGVASLPQTTPTTTLAIASPQV 246
Query: 621 GSITIGGSLL--QSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQ---------- 668
TI L+ Q+ +++ G + A+ ++ S PV SS P
Sbjct: 247 KDTTISSVLISPQNPGSLSLKGPVSPPAALSLSTQSLPVVTSSQKTAGPNTPPDFPISLG 306
Query: 669 GHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTS 711
HL+ + G+ G G + ++ + + S G S
Sbjct: 307 SHLAPLHQSSFGSVQLLGQTGPSALSDPTVKTISVDHSSTGAS 349
Score = 39.3 bits (90), Expect = 0.016
Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 21/187 (11%)
Query: 406 PSSAVSSPTQPG----PVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLC-- 459
P +SP+ G P PS G P +PS AP A S G P+
Sbjct: 927 PKGIPASPSPKGAPTPPAATPPSPKGG--PATPSPKWAPTPPAAT-PPSPKGGPATPSPK 983
Query: 460 GSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSL 519
G+P PP+ +G G + +P P G+ F A P +
Sbjct: 984 GAPTPPAATPPSPKG----GPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT 1039
Query: 520 EPRSQEQPLLQPKQDMLGILPA-------GSPLTSSISSSITSSLAATPPSPVGTSSVPG 572
P + P P PA G P T S+ + T AATPPSP G + P
Sbjct: 1040 PPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPP-AATPPSPKGGPATPS 1098
Query: 573 MNANALP 579
+P
Sbjct: 1099 PKGAPMP 1105
Score = 34.3 bits (77), Expect = 0.53
Identities = 48/177 (27%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Query: 400 LSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNS-----SLGS 454
L+D P SP P SA D+ + SSP +P ++ L NS S S
Sbjct: 790 LADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDS 849
Query: 455 PSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKL 514
P+ SP PP+ +G P S + P S K +E + F +
Sbjct: 850 PAT-THSP-----TPPSPKGA--PTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPA 901
Query: 515 KPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
P + + PK+ P G P + S + T AATPPSP G + P
Sbjct: 902 TPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPP-AATPPSPKGGPATP 957
Score = 32.3 bits (72), Expect = 2.0
Identities = 40/165 (24%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 409 AVSSPTQPGPVLYMPSAAGDSVP--VSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSI 466
AV+ P+ G P G S P +P SP + L + + +P+ SP G
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT-TPAATLPSPKGGP 1071
Query: 467 RKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQ 526
P P + +P P + A + K PH P +
Sbjct: 1072 ATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAA 1131
Query: 527 PLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
PK + P G+P T AATPPSP G + P
Sbjct: 1132 TPPSPKGGLATPPPKGAPTTP----------AATPPSPKGGLATP 1166
Score = 32.0 bits (71), Expect = 2.6
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 23/184 (12%)
Query: 406 PSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHA--PDLSALLCRNSSLGSPSNLCGSPP 463
P++ ++P P L PS G +P++P A P L S G+P+ +PP
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKG-----APTTPAATPPSPKGGLATPSPKGAPTTPAATPP 1226
Query: 464 ---GSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLE 520
G + P P + +P P + A + K PH
Sbjct: 1227 SPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGA 1286
Query: 521 PRSQEQPLLQPKQDMLGILPAGSPLTSSIS-------------SSITSSLAATPPSPVGT 567
P PK P G+P + + + A TPPSP GT
Sbjct: 1287 PNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGT 1346
Query: 568 SSVP 571
++P
Sbjct: 1347 PTLP 1350
Score = 32.0 bits (71), Expect = 2.6
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 31/199 (15%)
Query: 396 EQPPLSDDLQPSSAVS-SPTQPGPV------LYMPSAAGDSVPVSPSS---PHAPDLSAL 445
++PP + SS+ +P P P+ +PS+ + VP +PSS P AP + L
Sbjct: 1476 KEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKE-VPATPSSRRDPIAPTATLL 1534
Query: 446 LCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYL 505
+ + +P P ++ P I P E+ P S
Sbjct: 1535 SKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSS------------------ 1576
Query: 506 KNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPV 565
K + P + + + LL P + P +P +++ ATP +P
Sbjct: 1577 KEASSPPAVTPSTYKGAPSPKELLIPPA-VTSPSPKEAPTPPAVTPPSPEKGPATP-APK 1634
Query: 566 GTSSVPGMNANALPFYPTS 584
GT + P + ++L PTS
Sbjct: 1635 GTPTSPPVTPSSLKDSPTS 1653
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 43.1 bits (100), Expect = 0.001
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 722 ELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDA 781
E+ R+ E S ++ + + ++ CD W+K+ + +AA ++ + +
Sbjct: 1767 EIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1826
Query: 782 LEVQVKKLQEELERLHAGPEPQALPAFSDLEAL------SLSTLYSLQKQL---RAHLEQ 832
LE+ V+KLQ+EL++L+ L +D+ A+ + SLQ++L + HL
Sbjct: 1827 LELNVRKLQQELDQLNR----DKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNL 1882
Query: 833 VDKAVFHMQSVKCLKCQEQKR 853
+ + H + + EQ R
Sbjct: 1883 AKQDLLHTTKHQDVLLSEQTR 1903
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 42.7 bits (99), Expect = 0.001
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 529 LQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVE 588
L P + +L G P TS ISS T + A G+++ G++ + FY + + +
Sbjct: 1649 LFPTRSATSVL-VGEPTTSPISSGSTETTALP-----GSTTTAGLSEKSTTFYSSPRSPD 1702
Query: 589 SVIESA-LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSAS 647
+ + A ++E + + T PGS T+ G +S+A + PGS ++ S
Sbjct: 1703 TTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLS 1762
Query: 648 FHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFS 707
S + S S+ F P +E T L + + L + +S H ++GS
Sbjct: 1763 PGSTTASSLGPESTTFHSSP----GSTETTLLPDNTTASGL----LEASTPVHSSTGSPH 1814
Query: 708 PGTSPA 713
SPA
Sbjct: 1815 TTLSPA 1820
Score = 42.0 bits (97), Expect = 0.003
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 529 LQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVE 588
L P + +L G P TS ISS T + A G+++ G++ + FY + + +
Sbjct: 3206 LFPTRSATSVL-VGEPTTSPISSGSTETTALP-----GSTTTAGLSEKSTTFYSSPRSPD 3259
Query: 589 SVIESA-LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSAS 647
+ + A ++E + + T PGS T+ G +S+A + PGS ++ S
Sbjct: 3260 TTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGVSQESTASHSSPGSTDTTLS 3319
Query: 648 FHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFS 707
S + S S+ F P +E T L + + L + +S H ++GS
Sbjct: 3320 PGSTTASSLGPESTTFHSGP----GSTETTLLPDNTTASGL----LEASTPVHSSTGSPH 3371
Query: 708 PGTSPA 713
SPA
Sbjct: 3372 TTLSPA 3377
Score = 41.2 bits (95), Expect = 0.004
Identities = 76/338 (22%), Positives = 111/338 (32%), Gaps = 46/338 (13%)
Query: 406 PSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPD--LSALLCRNSSLGSPSNLCGSPP 463
P S+ S+ T P + + SSP +PD LS +S + S S P
Sbjct: 1667 PISSGSTETTALPGSTTTAGLSEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHSRP 1726
Query: 464 GSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSL---- 519
GS FPG + + S + + L P S
Sbjct: 1727 GSTHTT------AFPGSTTMPGVSQESTASHSSPGSTDTTLSPGSTTASSLGPESTTFHS 1780
Query: 520 EPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSIT-------------SSLAATPPSPVG 566
P S E LL G+L A +P+ SS S T S+ + PS
Sbjct: 1781 SPGSTETTLLPDNTTASGLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWPSSKD 1840
Query: 567 TSSVPGMNANALPFYPT------SDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHP 620
T P +A T S T + ++ L +E +T P P
Sbjct: 1841 TMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSP 1900
Query: 621 GSITIGGSLLQSSAPVNIPGSL-------GSSASFHSASPSPPVSLSSHFLQQPQGHLSQ 673
T G + +S+A + PGS S+AS S S ++H + P S
Sbjct: 1901 ARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPP---ST 1957
Query: 674 SENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTS 711
+ ++ H S G S+ HF S + G S
Sbjct: 1958 TSALVEEPTSYHSSPG-----STATTHFPDSSTTSGRS 1990
Score = 39.7 bits (91), Expect = 0.013
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 15/186 (8%)
Query: 529 LQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVE 588
L P + +L G P TS ISS T + A G+++ G++ + FY + + +
Sbjct: 4289 LFPTRSATSVL-VGEPTTSPISSGSTETTALP-----GSTTTAGLSEKSTTFYSSPRSPD 4342
Query: 589 SVIESA-LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSAS 647
+ + A ++E + + T P S T+ G +S+A + PGS ++ S
Sbjct: 4343 TTLSPASTTSSGVSEESTTSHSRPGSMHTTAFPSSTTMPGVSQESTASHSSPGSTDTTLS 4402
Query: 648 FHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFS 707
S + S S+ F P +E T L + + L + +S H ++GS
Sbjct: 4403 PGSTTASSLGPESTTFHSSP----GSTETTLLPDNTTASGL----LEASTPVHSSTGSPH 4454
Query: 708 PGTSPA 713
SPA
Sbjct: 4455 TTLSPA 4460
Score = 39.3 bits (90), Expect = 0.016
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 16/203 (7%)
Query: 518 SLEPRSQEQPLLQPKQDMLG--ILPAGSP----LTSSISSSITSSLAATPPSPVGTSSVP 571
++ RS+E D + +LPAGS + S S I+S T P G+++ P
Sbjct: 572 TISGRSEESKASHSSPDAMATTVLPAGSTPSVLVGDSTPSPISSGSMETTALP-GSTTKP 630
Query: 572 GMNANALPFYPTSDTVESV-IESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLL 630
G++ + FY + + ++ + +++ ++E + + T PGS T+ G
Sbjct: 631 GLSEKSTTFYSSPRSPDTTHLPASMTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGLSQ 690
Query: 631 QSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGL 690
+S+A + PG ++ S S + S + F +P +E T L + + L
Sbjct: 691 ESTASHSSPGPTDTTLSPGSTTASSLGPEYTTFHSRP----GSTETTLLPDNTTASGL-- 744
Query: 691 NGMNSSIWEHFASGSFSPGTSPA 713
+ +S+ H ++ S SPA
Sbjct: 745 --LEASMPVHSSTRSPHTTLSPA 765
Score = 37.7 bits (86), Expect = 0.048
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 542 GSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESA-LDDLDL 600
G P TS I+S+ + A G+++ G++ + FY + + + + A +
Sbjct: 250 GEPKTSPITSASMETTALP-----GSTTTAGLSEKSTTFYSSPRSPDRTLSPARTTSSGV 304
Query: 601 NEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLS 660
+E + + T+ P S T+ G +S+A +IPGS ++ S + +PS S
Sbjct: 305 SEKSTTSHSRPGPTHTIAFPDSTTMPGVSQESTASHSIPGSTDTTLSPGTTTPSSLGPES 364
Query: 661 SHFLQQP--------------QGHLSQSENTFLGTSASHGSLGLNGMNSSIWE--HFASG 704
+ F P G L S T + H +L + + E F S
Sbjct: 365 TTFHSSPGYTKTTRLPDNTTTSGLLEASTPVHSSTGSPHTTLSPSSSTTHEGEPTTFQSW 424
Query: 705 SFSPGTSPA 713
S TSPA
Sbjct: 425 PSSKDTSPA 433
Score = 32.7 bits (73), Expect = 1.5
Identities = 70/309 (22%), Positives = 111/309 (35%), Gaps = 50/309 (16%)
Query: 407 SSAVSSPTQPGPV------LYMPSAAGDSVPVSPSSPHAPDLSALLCRN----SSLGSPS 456
SS V++ T P P L S A S P S + H P+ S R+ +S S +
Sbjct: 4722 SSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTT 4781
Query: 457 NLCGSPPGSIR-----------KPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYL 505
+ SPP + P ++ FP S + S + D G L
Sbjct: 4782 HTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPDTNGITPL 4841
Query: 506 K-NFKCQAKLKPHS---LEPRSQEQPL--------LQPKQDMLGILPAGSPLTSSISSSI 553
+F ++ + + P S E L L K +L T S +S
Sbjct: 4842 PAHFTTSGRIAESTTFYISPGSMETTLASTATTPGLSAKSTILYSSSRSPDQTLSPASMT 4901
Query: 554 TSSLAATPPS-------------PVGTSSVPGMNANALPFYPTSDTVESVIE--SALDDL 598
+SS++ P S P T++ G++ + F+ + E+ + S
Sbjct: 4902 SSSISGEPTSLYSQAESTHTTAFPASTTT-SGLSQESTTFHSKPGSTETTLSPGSITTSS 4960
Query: 599 DLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVS 658
EF + STV P S T+ G +S+ + PGS ++A HS + S
Sbjct: 4961 FAQEFTTPHSQPGSALSTVS-PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQ 5019
Query: 659 LSSHFLQQP 667
S+ F P
Sbjct: 5020 QSTPFPDSP 5028
Score = 32.3 bits (72), Expect = 2.0
Identities = 85/377 (22%), Positives = 126/377 (33%), Gaps = 66/377 (17%)
Query: 410 VSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKP 469
+SSP L + S P S ++ H PD S R+ + S+ G+I P
Sbjct: 1951 ISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEE-STASHSSQDATGTIVLP 2009
Query: 470 PNLEGIVFPGESGLAP---GSYKKA--PGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQ 524
V GES +P GS + PG + +E F + +L P S
Sbjct: 2010 ARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGL-SEKSTTFHSSPRSPATTLSPAST 2068
Query: 525 EQPLLQPKQDMLGILPAGSPLTSSISSSITSSLA---ATPPSPVGTSSVPGMNANALPFY 581
+ + P + T+ S+ T L+ T S G++ + A+
Sbjct: 2069 TSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSG 2128
Query: 582 PTSDTVESVIESALDDLDLNEFGVAALE-----KTFDNS-----TVPHPGSITIGGSLLQ 631
P+ ++ S D L+ AL TF +S T P S T G +
Sbjct: 2129 PSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEA 2188
Query: 632 SS---------------APVNIPGSLGSSASF--HSAS----PSPP------VSLSSHFL 664
S+ A PG G S +F H AS PSPP V S+ +
Sbjct: 2189 STRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYH 2248
Query: 665 QQP--------------QGH-----LSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGS 705
+ P GH + S GT+ S +G S + GS
Sbjct: 2249 RSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGS 2308
Query: 706 FSPGTSPAFLSGPGAAE 722
T P + PG +E
Sbjct: 2309 TEITTLPGSTTTPGLSE 2325
Score = 32.0 bits (71), Expect = 2.6
Identities = 74/339 (21%), Positives = 112/339 (33%), Gaps = 59/339 (17%)
Query: 404 LQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPP 463
L PSS ++ P S + SP SP A LS +S + S+ S P
Sbjct: 2500 LSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDAT-LSPATTTSSGVSEESSTSHSQP 2558
Query: 464 GSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRS 523
GS + PG S + S+ +PG + A + Q HS P S
Sbjct: 2559 GSTHTTAFPDSTTTPGLSRHSTTSHS-SPGSTDTTLLPASTTTSGPSQESTTSHS-SPGS 2616
Query: 524 QEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPT 583
+ +++S T++L+ S SS PG L +P
Sbjct: 2617 TD---------------------TALSPGSTTALSFGQESTTFHSS-PGSTHTTL--FPD 2652
Query: 584 SDTVESVIESA-------------LDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLL 630
S T ++E++ L G+ TF HP S +
Sbjct: 2653 STTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTTFQT----HPAS-----THT 2703
Query: 631 QSSAPVNIPGSLGSSASFHSASPSPPVSLSSHF--LQQPQGH-----LSQSENTFLGTSA 683
S P + S ++H + S P ++HF GH + S GT+
Sbjct: 2704 TPSPPSTATAPVEESTTYHRSPGSTP---TTHFPASSTTSGHSEKSTIFHSSPDASGTTP 2760
Query: 684 SHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGAAE 722
S +G S + GS T P + PG +E
Sbjct: 2761 SSAHSTTSGRGESTTSRISPGSTEITTLPGSTTTPGLSE 2799
Score = 31.6 bits (70), Expect = 3.4
Identities = 82/376 (21%), Positives = 133/376 (35%), Gaps = 67/376 (17%)
Query: 411 SSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPP 470
S+P+ ++ P++ S P S ++ H PD S R+ + S+ G+I P
Sbjct: 870 SAPSTTSALVEEPTSYHSS-PGSTATTHFPDSSTTSGRSEE-STASHSSQDATGTIVLPA 927
Query: 471 NLEGIVFPGESGLAP---GSYKKA--PGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQE 525
V GES +P GS + PG + +E F + +L P S
Sbjct: 928 RSTTSVLLGESTTSPISSGSMETTALPGSTTTPGL-SERSTTFHSSPRSPATTLSPASTT 986
Query: 526 QPLLQPKQDMLGILPAGSPLTSSISSSITSSLA---ATPPSPVGTSSVPGMNANALPFYP 582
+ + P + T+ S+ T L+ T S G++ + A+ P
Sbjct: 987 SSGVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGP 1046
Query: 583 TSDTVESVIESALDDLDLNEFGVAALEKTFDNSTV-PHPGSI--------TIGGSLLQSS 633
+ ++ S S D L+ AL +++T +PGS T ++++S
Sbjct: 1047 SQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGSTHTTLFPDSTTSSGIVEAS 1106
Query: 634 APVNI----------------PGSLGSSASF--HSAS----PSPP------VSLSSHFLQ 665
V+ PG G S +F H AS PSPP V S+ + +
Sbjct: 1107 TRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHR 1166
Query: 666 QP--------------QGH-----LSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSF 706
P GH + S GT+ S +G S + GS
Sbjct: 1167 SPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGST 1226
Query: 707 SPGTSPAFLSGPGAAE 722
T P + PG +E
Sbjct: 1227 EITTLPGSTTTPGLSE 1242
Score = 30.0 bits (66), Expect = 9.9
Identities = 66/313 (21%), Positives = 103/313 (32%), Gaps = 56/313 (17%)
Query: 435 SSPHAPD--LSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAP 492
SSP +P LS + +G S S PGS + PG S + Y +P
Sbjct: 3889 SSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSSSP 3948
Query: 493 GFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSS 552
G ++ PRS + + + PA + T S
Sbjct: 3949 GSTET--------------------TVFPRSTTTSVRREEPTTFHSRPASTHTTLFTEDS 3988
Query: 553 ITSSLAATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTF 612
TS L + A P P S ++ + + L DL E +
Sbjct: 3989 TTSGLTE--------------ESTAFPGSPAS--TQTGLPATLTTADLGEESTTFPSSSG 4032
Query: 613 DNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSASFHSASPSPPVSLSSHFL----QQPQ 668
T P T G L+ S P + S + + + +P +S S + P
Sbjct: 4033 STGTKLSPARSTTSG-LVGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPD 4091
Query: 669 GHLSQSENTFLG----TSASHGSLGL--------NGMNSSIWEHFASGSFSPGTSPAFLS 716
LS + T G +S SH G + S + + + S G++ A LS
Sbjct: 4092 ATLSPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLS 4151
Query: 717 GPGAAELARLRQE 729
PG+ + L Q+
Sbjct: 4152 -PGSTTASSLGQQ 4163
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 42.7 bits (99), Expect = 0.001
Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 374 KCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQ-------------PGPVL 420
+C D + G C RG C F H P + +D+ + P Q P P +
Sbjct: 293 RCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNLPGMLPFPAQPPVVEGPPPPGLPPPPPI 352
Query: 421 YMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPN 471
P PV P P P L + G P L P + PPN
Sbjct: 353 LTPPPVNLRPPVPPPGPLPPSLPPV------TGPPPPLPPLQPSGMDAPPN 397
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 42.4 bits (98), Expect = 0.002
Identities = 70/300 (23%), Positives = 102/300 (34%), Gaps = 39/300 (13%)
Query: 292 YKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCE 349
YKTE C+ + C+ G C + H + R R KY++ C + G C
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRT------FHTIGFCP 207
Query: 350 NGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSA 409
G C + H E++ P D++ G+ F +P L L S
Sbjct: 208 YGPRCHFIHNADERRPAP---SGGASGDLRAFGT-RDALHLGFPREPRPKLHHSLSFSGF 263
Query: 410 VSSPTQPGPVLYMP---SAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSI 466
S QP L P + P PS A S+ SS + S G+P
Sbjct: 264 PSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCA 323
Query: 467 RKPPNLEGIVFPGESG----LAPG----SYKKAPGFEREDQVGAEYLKNFKCQAKLKPHS 518
+ G G LAPG + A G E L + ++ H+
Sbjct: 324 SAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPE-LSSLITPLAIQTHN 382
Query: 519 LEP-------RSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVP 571
RSQ+Q Q G+ P P + S+ + AA PPSP + +P
Sbjct: 383 FAAVAAAAYYRSQQQ------QQQQGLAPPAQP--PAPPSATLPAGAAAPPSPPFSFQLP 434
Score = 36.6 bits (83), Expect = 0.11
Identities = 94/412 (22%), Positives = 142/412 (34%), Gaps = 88/412 (21%)
Query: 340 DEWGDPGKCENGDACQYC-HTRTEQ------QFHPEIYKSTKCNDMQQSGSCPRGPFCAF 392
+++ D ENGD Q+ H + +Q Q + YK+ C ++SG+C G C F
Sbjct: 117 NKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQF 176
Query: 393 AH--------VEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSA 444
AH P +L + GP + A + P +PS + DL A
Sbjct: 177 AHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRP-APSGGASGDLRA 235
Query: 445 LLCRNS-SLGSPSNLCGSPPGSIRKP-PNLEGIVFPGESGLAPGSYKKAPGFEREDQVGA 502
R++ LG P R+P P L + SG G ++ G E
Sbjct: 236 FGTRDALHLGFP-----------REPRPKLHHSL--SFSGFPSGHHQPPGGLE-----SP 277
Query: 503 EYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSP--LTSSISSSITSSLAAT 560
L + + P S P+G+P S+ +++ + L T
Sbjct: 278 LLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGT 337
Query: 561 --------PPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTF 612
P +P S NA F P ++ + A+ + AA ++
Sbjct: 338 GGAEDLLAPGAPCAACSSASCANNAFAFGPELSSL--ITPLAIQTHNFAAVAAAAYYRSQ 395
Query: 613 DN---------STVPHPGSITI-GGSLLQSSAPVN--IPGSLGSSASFHSASPSPPVSLS 660
+ P P S T+ G+ S P + +P L S F A PSPP SLS
Sbjct: 396 QQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVF-DAPPSPPDSLS 454
Query: 661 SHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSP 712
+++L S S GSL SGS SP P
Sbjct: 455 -------------DRDSYLSGSLSSGSL--------------SGSESPSLDP 479
>gi|14042925 ring finger protein 26 [Homo sapiens]
Length = 433
Score = 42.0 bits (97), Expect = 0.003
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 844 KCLKCQEQKRAVL--PCQHAALCELCAE--------GSECPICQPGRAHTL 884
KC+ CQ+Q + VL PC+H LC+ C E CP+C+ G TL
Sbjct: 379 KCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTL 429
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 40.8 bits (94), Expect = 0.006
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 380 QSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSP----S 435
++ PRGP C P D + A S P GP L P AA SVP +P
Sbjct: 122 RASPAPRGP-CGHLECHGPAARGDTGDTGA-SPPPPAGPSLARPDAARPSVPSAPRCASC 179
Query: 436 SPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPG 493
PHAP L R S++ L + GS R+ P G G G + APG
Sbjct: 180 PPHAP-----LARPSAVAEGPGLAQASGGSWRRCP---GASSAGPPPWPRGYLRSAPG 229
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 40.8 bits (94), Expect = 0.006
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 380 QSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSP----S 435
++ PRGP C P D + A S P GP L P AA SVP +P
Sbjct: 122 RASPAPRGP-CGHLECHGPAARGDTGDTGA-SPPPPAGPSLARPDAARPSVPSAPRCASC 179
Query: 436 SPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPG 493
PHAP L R S++ L + GS R+ P G G G + APG
Sbjct: 180 PPHAP-----LARPSAVAEGPGLAQASGGSWRRCP---GASSAGPPPWPRGYLRSAPG 229
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 40.8 bits (94), Expect = 0.006
Identities = 52/206 (25%), Positives = 70/206 (33%), Gaps = 13/206 (6%)
Query: 385 PRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSA 444
P P + P S P+S SPT P PS + S SP+SP+ S
Sbjct: 1722 PTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 445 LLCRNSSLGSPSNLCGSP------PGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFERED 498
S SP++ SP P S R P P +P S +P +
Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ-SPTYTPSSPSYSPSSPSYSPTSPKYT 1840
Query: 499 QVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLA 558
Y + P P S + PK P SP T S +S
Sbjct: 1841 PTSPSYSPSSPEYTPTSP-KYSPTSPKYSPTSPKYSPTS--PTYSPTTPKYS---PTSPT 1894
Query: 559 ATPPSPVGTSSVPGMNANALPFYPTS 584
+P SPV T + P + + + PTS
Sbjct: 1895 YSPTSPVYTPTSPKYSPTSPTYSPTS 1920
Score = 37.0 bits (84), Expect = 0.081
Identities = 47/203 (23%), Positives = 67/203 (33%), Gaps = 15/203 (7%)
Query: 382 GSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPD 441
G P+ P + P S P+S SPT P PS + S SP+SP
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666
Query: 442 LSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVG 501
S S SP++ SP P + P S +P +P +
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS------PSYSPTSPSYSPTSPSY---SPTS 1717
Query: 502 AEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATP 561
Y + P S P S P P T + S +S + +P
Sbjct: 1718 PSYSPTSPSYSPTSP-SYSPTSPSYSPTSPNYS-----PTSPNYTPTSPSYSPTSPSYSP 1771
Query: 562 PSPVGTSSVPGMNANALPFYPTS 584
SP T + P + + + PTS
Sbjct: 1772 TSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 35.8 bits (81), Expect = 0.18
Identities = 49/206 (23%), Positives = 69/206 (33%), Gaps = 15/206 (7%)
Query: 379 QQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPH 438
Q P P + P S + P+S SPT P PS + S SP+SP
Sbjct: 1611 QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1670
Query: 439 APDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFERED 498
S S SP++ SP P + P S +P +P +
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS------PSYSPTSPSYSPTSPSY---S 1721
Query: 499 QVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLA 558
Y + P S P S P P+ SP + S S +S
Sbjct: 1722 PTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNYTPTS--PSYSPTSPSYS---PTSPN 1775
Query: 559 ATPPSPVGTSSVPGMNANALPFYPTS 584
TP SP + + P + + + PTS
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTS 1801
Score = 35.0 bits (79), Expect = 0.31
Identities = 74/309 (23%), Positives = 112/309 (36%), Gaps = 44/309 (14%)
Query: 407 SSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSI 466
S +V S PG + PSAA D+ SP ++P S + GSP GSP S
Sbjct: 1532 SPSVGSGMTPGAAGFSPSAASDASGFSPG--YSPAWS------PTPGSP----GSPGPSS 1579
Query: 467 RKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQ 526
P+ G + P S +P ++PG Y + P S P S
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPRSPG---------GYTPQSPSYSPTSP-SYSPTSPSY 1629
Query: 527 PLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANALPFYPTSDT 586
P P+ SP + S S +S + +P SP + + P + + + PTS +
Sbjct: 1630 SPTSPNYSPTS--PSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684
Query: 587 VESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPVNIPGSLGSSA 646
S S P S + ++P P S S
Sbjct: 1685 YSPTSPS---------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729
Query: 647 SFHSASP-SPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGS 705
+ S SP SP S +S + + + ++ TS S+ N +S S S
Sbjct: 1730 TSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPS 1789
Query: 706 FSPGTSPAF 714
+SP TSP++
Sbjct: 1790 YSP-TSPSY 1797
Score = 35.0 bits (79), Expect = 0.31
Identities = 53/224 (23%), Positives = 74/224 (33%), Gaps = 18/224 (8%)
Query: 385 PRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSA 444
P P + P S + P+S SPT P PS + S SPSSP S
Sbjct: 1757 PTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSP 1816
Query: 445 LLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEY 504
+S SPS+ SP P + P P S K +P + +Y
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPS--YSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874
Query: 505 LKNFKCQAKLKPH------SLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLA 558
+ P + P S PK P SP + S +S
Sbjct: 1875 SPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTS--PTYSPTSPKYS---PTSPT 1929
Query: 559 ATPPSPVGTSSVPGMNANALPFYPTSDTVESVIESALDDLDLNE 602
+P SP G++ P P Y + S+ A+ D +E
Sbjct: 1930 YSPTSPKGSTYSP-----TSPGYSPTSPTYSLTSPAISPDDSDE 1968
Score = 31.2 bits (69), Expect = 4.5
Identities = 47/186 (25%), Positives = 64/186 (34%), Gaps = 18/186 (9%)
Query: 406 PSSAVSSPTQPGPVLYMPSAAGDSVPVSPS-SPHAPDLS------ALLCRNSSLGSPSNL 458
P A+S P Y P + G P SPS SP +P S + N S SPS
Sbjct: 1585 PGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1644
Query: 459 CGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHS 518
SP S P P +P S +P Y + P S
Sbjct: 1645 PTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-S 1698
Query: 519 LEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVGTSSVPGMNANAL 578
P S P P+ SP + S S +S + +P SP + + P + +
Sbjct: 1699 YSPTSPSYSPTSPSYSPTS--PSYSPTSPSYS---PTSPSYSPTSPSYSPTSPNYSPTSP 1753
Query: 579 PFYPTS 584
+ PTS
Sbjct: 1754 NYTPTS 1759
Score = 30.0 bits (66), Expect = 9.9
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 635 PVNIPG--SLGSSASFHSASPSPPVSLSSHFLQQPQGH--------------LSQSENTF 678
P NIPG + G + F ++PSP +S QG ++ F
Sbjct: 1487 PTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGF 1546
Query: 679 LGTSASHGSLGLNGMNSSIWEHFASGSFSPGTSPAFLSGPGAA 721
++AS S G + S W SPG S ++ PG A
Sbjct: 1547 SPSAASDAS-GFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGA 1588
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 40.8 bits (94), Expect = 0.006
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 43/175 (24%)
Query: 63 NNKRGAAKRQEDKTMSKGPGPGGSAASSAPPAATAQVLQAQP-EKPQHYT--YLKEFRTE 119
N K G ++ K K PGPG +++ + +Q +P EK QH + ++ + E
Sbjct: 131 NLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVE 190
Query: 120 Q-----CPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATG 174
+ C F++ KC + C H +++ + C Y G
Sbjct: 191 RKGKQICKYFLERKCI--KGDQCKFDHDAEIEKKKEM--------------CKFY--VQG 232
Query: 175 LCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGP 229
C G+ C +LH Y ++Y TG ++ G +C F+H P
Sbjct: 233 YCTRGENCLYLH-------NEYPCKFYHTGTKCYQ----------GEYCKFSHAP 270
Score = 31.2 bits (69), Expect = 4.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 347 KCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQP 398
KC GD C++ H EI K + G C RG C + H E P
Sbjct: 204 KCIKGDQCKFDHDA-------EIEKKKEMCKFYVQGYCTRGENCLYLHNEYP 248
Score = 30.0 bits (66), Expect = 9.9
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 27/103 (26%)
Query: 302 RLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRT 361
R C +G C + H+++ ++ Y G C G+ C Y H
Sbjct: 203 RKCIKGDQCKFDHDAEIEKKKEMCKFYVQ---------------GYCTRGENCLYLHNEY 247
Query: 362 EQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDL 404
+F+ + TKC +G +C F+H P + +L
Sbjct: 248 PCKFY---HTGTKCY---------QGEYCKFSHAPLTPETQEL 278
>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
sapiens]
Length = 1719
Score = 40.8 bits (94), Expect = 0.006
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 722 ELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDA 781
E +RQELD+A IK +E+ K +Q + KE +A ER E + A QR
Sbjct: 515 EANAVRQELDDAFRQIKAYEKQIKTLQQEREDLNKELVQASERLKNQSKELKDAHCQRKL 574
Query: 782 LEVQVKKLQEELERLHAGPEPQALPAFSDLEALSL--STLYSLQKQLRAHLEQVDKAVFH 839
+ ++ E L LH + A E + L + SL+++LR + H
Sbjct: 575 AMQEFMEINERLTELHTQKQKLARHVRDKEEEVDLVMQKVESLRQELRRTERAKKELEVH 634
Query: 840 MQSVKCLKCQEQK 852
+++ +++K
Sbjct: 635 TEALAAEASKDRK 647
Score = 32.0 bits (71), Expect = 2.6
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 722 ELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAREQRDA 781
+LAR ++ +E + Q ES +Q + + KKE E E +A ++ REQ +
Sbjct: 595 KLARHVRDKEEEVDLVMQKVESLRQELRRTERAKKELEVHTEALAAEASKDRKLREQSEH 654
Query: 782 LEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAV-FHM 840
Q++ E L++ P E L T L+K+ + E++ K H
Sbjct: 655 YSKQLENELEGLKQKQISYSPGVCSIEHQQEITKLKT--DLEKKSIFYEEELSKREGIHA 712
Query: 841 QSVKCLK 847
+K LK
Sbjct: 713 NEIKNLK 719
>gi|156105697 ring finger and CCCH-type zinc finger domains 2
isoform 1 [Homo sapiens]
Length = 1191
Score = 40.8 bits (94), Expect = 0.006
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 370 YKSTKCNDMQQSGSCPRGPFCAFAHVEQ 397
YK++ C D++Q G CPRG C FAH ++
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQE 438
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,140,849
Number of Sequences: 37866
Number of extensions: 2433192
Number of successful extensions: 11640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 479
Number of HSP's that attempted gapping in prelim test: 10067
Number of HSP's gapped (non-prelim): 1931
length of query: 886
length of database: 18,247,518
effective HSP length: 111
effective length of query: 775
effective length of database: 14,044,392
effective search space: 10884403800
effective search space used: 10884403800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.