Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 29294649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29294649 dicer1 [Homo sapiens]
(1922 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29294649 dicer1 [Homo sapiens] 3902 0.0
gi|29294651 dicer1 [Homo sapiens] 3902 0.0
gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... 113 2e-24
gi|149408122 RNA helicase LGP2 [Homo sapiens] 97 2e-19
gi|27886568 interferon induced with helicase C domain 1 [Homo sa... 80 3e-14
gi|74959747 Fanconi anemia, complementation group M [Homo sapiens] 66 4e-10
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 65 5e-10
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 65 5e-10
gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ... 52 4e-06
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ... 51 1e-05
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 50 2e-05
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 48 8e-05
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 48 8e-05
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 48 8e-05
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 48 1e-04
gi|7661920 eukaryotic translation initiation factor 4A, isoform ... 47 2e-04
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 46 4e-04
gi|187936946 hypothetical protein LOC84140 [Homo sapiens] 45 9e-04
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 44 0.001
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 44 0.001
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 44 0.001
gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo sapi... 43 0.003
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens] 43 0.003
gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapi... 43 0.003
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 43 0.003
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 42 0.006
gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo sapi... 42 0.006
gi|13129006 nucleolar protein GU2 [Homo sapiens] 42 0.006
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 42 0.006
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 42 0.006
>gi|29294649 dicer1 [Homo sapiens]
Length = 1922
Score = 3902 bits (10119), Expect = 0.0
Identities = 1922/1922 (100%), Positives = 1922/1922 (100%)
Query: 1 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT 60
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
Sbjct: 1 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT 60
Query: 61 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK 120
IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
Sbjct: 61 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK 120
Query: 121 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA 180
VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
Sbjct: 121 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA 180
Query: 181 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL 240
ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
Sbjct: 181 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL 240
Query: 241 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK 300
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
Sbjct: 241 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK 300
Query: 301 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE 360
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
Sbjct: 301 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE 360
Query: 361 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE 420
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
Sbjct: 361 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE 420
Query: 421 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT 480
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
Sbjct: 421 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT 480
Query: 481 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP 540
GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
Sbjct: 481 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP 540
Query: 541 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD 600
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
Sbjct: 541 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD 600
Query: 601 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD 660
IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
Sbjct: 601 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD 660
Query: 661 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720
GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
Sbjct: 661 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720
Query: 721 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP 780
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
Sbjct: 721 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP 780
Query: 781 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL 840
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
Sbjct: 781 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL 840
Query: 841 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI 900
QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
Sbjct: 841 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI 900
Query: 901 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF 960
EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
Sbjct: 901 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF 960
Query: 961 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR 1020
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
Sbjct: 961 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR 1020
Query: 1021 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV 1080
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
Sbjct: 1021 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV 1080
Query: 1081 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT 1140
GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
Sbjct: 1081 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT 1140
Query: 1141 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN 1200
SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
Sbjct: 1141 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN 1200
Query: 1201 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV 1260
QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
Sbjct: 1201 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV 1260
Query: 1261 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
Sbjct: 1261 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
Query: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
Query: 1381 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED 1440
LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
Sbjct: 1381 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED 1440
Query: 1441 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED 1500
DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
Sbjct: 1441 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED 1500
Query: 1501 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA 1560
FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
Sbjct: 1501 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA 1560
Query: 1561 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS 1620
DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
Sbjct: 1561 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS 1620
Query: 1621 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK 1680
CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
Sbjct: 1621 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK 1680
Query: 1681 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 1740
AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
Sbjct: 1681 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 1740
Query: 1741 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 1800
NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
Sbjct: 1741 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 1800
Query: 1801 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
Sbjct: 1801 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
Query: 1861 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP 1920
EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP
Sbjct: 1861 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP 1920
Query: 1921 NS 1922
NS
Sbjct: 1921 NS 1922
>gi|29294651 dicer1 [Homo sapiens]
Length = 1922
Score = 3902 bits (10119), Expect = 0.0
Identities = 1922/1922 (100%), Positives = 1922/1922 (100%)
Query: 1 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT 60
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
Sbjct: 1 MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT 60
Query: 61 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK 120
IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
Sbjct: 61 IVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLK 120
Query: 121 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA 180
VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA
Sbjct: 121 VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLA 180
Query: 181 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL 240
ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
Sbjct: 181 ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL 240
Query: 241 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK 300
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK
Sbjct: 241 VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISK 300
Query: 301 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE 360
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
Sbjct: 301 QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE 360
Query: 361 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE 420
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
Sbjct: 361 EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE 420
Query: 421 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT 480
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
Sbjct: 421 DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT 480
Query: 481 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP 540
GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
Sbjct: 481 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP 540
Query: 541 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD 600
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD
Sbjct: 541 TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETD 600
Query: 601 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD 660
IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD
Sbjct: 601 IDPVMDDDDVFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPD 660
Query: 661 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720
GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV
Sbjct: 661 GTFYSTLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720
Query: 721 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP 780
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP
Sbjct: 721 KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTP 780
Query: 781 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL 840
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL
Sbjct: 781 LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSL 840
Query: 841 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI 900
QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI
Sbjct: 841 QMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDI 900
Query: 901 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF 960
EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
Sbjct: 901 EKSEARIGIPSTKYTKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF 960
Query: 961 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR 1020
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
Sbjct: 961 PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR 1020
Query: 1021 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV 1080
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV
Sbjct: 1021 KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGV 1080
Query: 1081 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT 1140
GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT
Sbjct: 1081 GVRSLPADFRYPNLDFGWKKSIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRT 1140
Query: 1141 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN 1200
SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN
Sbjct: 1141 SSLENHDQMSVNCRTLLSESPGKLHVEVSADLTAINGLSYNQNLANGSYDLANRDFCQGN 1200
Query: 1201 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV 1260
QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV
Sbjct: 1201 QLNYYKQEIPVQPTTSYSIQNLYSYENQPQPSDECTLLSNKYLDGNANKSTSDGSPVMAV 1260
Query: 1261 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD
Sbjct: 1261 MPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGD 1320
Query: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW
Sbjct: 1321 SFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNW 1380
Query: 1381 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED 1440
LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED
Sbjct: 1381 LPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYED 1440
Query: 1441 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED 1500
DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED
Sbjct: 1441 DFLEYDQEHIRFIDNMLMGSGAFVKKISLSPFSTTDSAYEWKMPKKSSLGSMPFSSDFED 1500
Query: 1501 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA 1560
FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA
Sbjct: 1501 FDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIA 1560
Query: 1561 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS 1620
DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS
Sbjct: 1561 DCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVS 1620
Query: 1621 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK 1680
CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK
Sbjct: 1621 CAAASVASSRSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNK 1680
Query: 1681 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 1740
AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV
Sbjct: 1681 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 1740
Query: 1741 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 1800
NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE
Sbjct: 1741 NNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 1800
Query: 1801 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM
Sbjct: 1801 DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
Query: 1861 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP 1920
EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP
Sbjct: 1861 EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVP 1920
Query: 1921 NS 1922
NS
Sbjct: 1921 NS 1922
>gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Homo sapiens]
Length = 925
Score = 113 bits (283), Expect = 2e-24
Identities = 142/583 (24%), Positives = 248/583 (42%), Gaps = 79/583 (13%)
Query: 35 EAIHDNIYTP---RKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFS 90
E N+Y+P R YQ+EL L A NTI+C TG GKTF+++L+ + + +
Sbjct: 231 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQG 288
Query: 91 RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIM 150
+ GK VF N QQ S + + + + A+ Q + ++I+
Sbjct: 289 QKGK-VVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIIL 346
Query: 151 TCYVALNVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRIL 203
T + +N LK G + SLS L++FDECH HPY IM KL + P+++
Sbjct: 347 TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
Query: 204 GLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDR 263
GLTAS+ G D + +E L+ I K A ++ ++ + E VV
Sbjct: 407 GLTASV--GVGDAKNTDE---ALDYICKLCASLDASVIATVKHNLEELEQVV-----YKP 456
Query: 264 SGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLG--------- 314
+ ++ + + +I + RD+ ++K+I D + +
Sbjct: 457 QKFFRKVESRISDKFKYI------IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
Query: 315 PWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIH--ALCEEHFSPASLDLKF 372
W MV ++ K E+ + + L+T + LRK + + EH
Sbjct: 511 QWIVTVQKACMVFQMPD--KDEESRICKALFLYT-SHLRKYNDALIISEH---------- 557
Query: 373 VTPKVIKLLEILRKYKPYERQQ-FESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEK-- 429
++ L+ L+ + R F+ +E + + + +S D E + E
Sbjct: 558 --ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
Query: 430 ---PETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGK 486
E +P T I+FV+ R L I + +P+L+++ +TG G
Sbjct: 616 FILQEEYHLNPET---ITILFVKTRALVDALKNWI----EGNPKLSFLKPGILTGRG--- 665
Query: 487 NQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRS 545
N+ Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct: 666 --KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
Query: 546 YVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN 588
+Q++GR RA S +L + +E + YK EK++ +
Sbjct: 724 MIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 96.7 bits (239), Expect = 2e-19
Identities = 140/544 (25%), Positives = 237/544 (43%), Gaps = 88/544 (16%)
Query: 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA 103
R YQ E++ AL+ N I+ L TG+GKT A + K + +G + V LVN
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV------DGAKVVVLVNRV 57
Query: 104 NQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTK-HQVLIMTCYVALNVL--- 159
+ V Q R D G ++ ++ + H +LI T + L
Sbjct: 58 HLVTQHGEEFRRMLD---GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSP 114
Query: 160 -KNGYLSLSDINLLVFDECHLAILDHPYREIMKL-----CENCPSCPRILGLTASILNGK 213
+ ++ L+ +L+V DECH D Y IM + P++LGLTAS G
Sbjct: 115 EEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTAS--PGT 172
Query: 214 CDPEELEEKIQKLEKILKSNAETATDLVV------LDRYTSQPCEIVVDC-----GPFTD 262
+L+ I + ++ +N +T + L ++ QPC+ C PF D
Sbjct: 173 GGASKLDGAINHVLQLC-ANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGD 231
Query: 263 RSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVA 322
L ++L+ ++ + L + S++ + + +Q++ A + A
Sbjct: 232 ---LLKKLMDQIHDHLE------MPELSRKFGTQMYEQQVVKLSEAAAL----------A 272
Query: 323 GMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLE 382
G+ +E + Y H + + LL DT +R + AL A+L + V K
Sbjct: 273 GL--QEQRVYALHLRR--YNDALLIHDT-VRAVDAL-------AALQDFYHREHVTKTQI 320
Query: 383 ILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDED--EEIEEKEKPETNFPSPFTN 440
+ ER+ + + +N+ +++ E+ + E+I +++ +N P
Sbjct: 321 LCA-----ERRLLALFD--DRKNELAHLATHGPENPKLEMLEKILQRQFSSSNSPR---- 369
Query: 441 ILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRK 500
GIIF R +A L +++ +Q + I + + G G Q R
Sbjct: 370 ---GIIFTRTRQSAHSLLLWLQQ--QQGLQTVDIRAQLLIGAGNSSQSTHMTQ-----RD 419
Query: 501 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNY 560
Q+EV++KF+ NLL+ATS+ EEG+DIP CN+VVR+ L T S VQ++GRARA S Y
Sbjct: 420 QQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVY 479
Query: 561 IMLA 564
+A
Sbjct: 480 AFVA 483
>gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
Length = 1025
Score = 79.7 bits (195), Expect = 3e-14
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 15/153 (9%)
Query: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503
GIIF + R +A L++ I E ++ E+ + + I + +P + +Q+E
Sbjct: 721 GIIFTKTRQSAYALSQWITE-NEKFAEVGVKAHHLIGAGHSSEFKPMTQN------EQKE 773
Query: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
V+ KFR + NLLIAT++ EEG+DI +CN+V+R+ L T + VQ++GRARA S Y+++
Sbjct: 774 VISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLV 833
Query: 564 A-------DTDKIKSFEEDLKTYKAIEKILRNK 589
A + + + F E + YKAI + K
Sbjct: 834 AHSGSGVIEHETVNDFREKM-MYKAIHCVQNMK 865
Score = 56.6 bits (135), Expect = 2e-07
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA 103
R YQ+E+ + AL+ N I+CL TGSGKT +AV + K+ + S GK + LVN
Sbjct: 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD-HLDKKKKASEPGK-VIVLVNKV 366
Query: 104 NQVAQQVSAVRTHSDLK-----VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNV 158
+ +Q+ LK +G + ++ S+ + ++I T + N
Sbjct: 367 -LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP-----EVVKSCDIIISTAQILENS 420
Query: 159 LKN------GYLSLSDINLLVFDECHLAILDHPYREIMK------------LCENCP--S 198
L N + LSD +L++ DECH + Y IM+ EN P
Sbjct: 421 LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP 480
Query: 199 CPRILGLTASI-LNGKCDPEELEEKIQKL 226
P+ILGLTAS + G + EE I KL
Sbjct: 481 LPQILGLTASPGVGGATKQAKAEEHILKL 509
>gi|74959747 Fanconi anemia, complementation group M [Homo sapiens]
Length = 2048
Score = 65.9 bits (159), Expect = 4e-10
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSAN 104
R YQ+ + AAL NT+VCL TG GKTFIA + + Y F + VF+ +
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAV----VMYNFYRWFPSG--KVVFMAPTKP 145
Query: 105 QVAQQVSAVRTHSDLKVGEYSNL--EVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNG 162
V QQ+ A + + + AS KE W +VL +T V +N L G
Sbjct: 146 LVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIW----CSKRVLFLTPQVMVNDLSRG 201
Query: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTAS 208
++I LV DE H A+ ++ Y ++++ + RIL L+A+
Sbjct: 202 ACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSAT 247
Score = 41.2 bits (95), Expect = 0.010
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 481 GHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP 540
GH GK+ Q E Q EV+++FR N L++T + EEG+DI + +L++ FD
Sbjct: 510 GHASGKSTKGFTQKE-----QLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQ 564
Query: 541 TEYRSYVQSKGR 552
VQ GR
Sbjct: 565 KSPIRLVQRMGR 576
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 65.5 bits (158), Expect = 5e-10
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 50/282 (17%)
Query: 1653 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCY-QRLEFLG 1708
P+ D+ L + ++ FE+ I F + L +AFT + +N +T + QR+EFLG
Sbjct: 1054 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1113
Query: 1709 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHV 1768
D+I+ + T++L+ H G LT LRS+LVNN A +A + +Y A++
Sbjct: 1114 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY--AIT------ 1165
Query: 1769 IDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMS-L 1827
D+ K K + D+ ES A+Y+D + +
Sbjct: 1166 -------------------------NDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV 1200
Query: 1828 ETVWQV-YYPMMRPLIEKFSANVPRSPVRELL------EMEPETAKFSPAERTYDGKVRV 1880
T V ++P ++ I N P+S +++ EP+ + + R
Sbjct: 1201 HTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHART 1260
Query: 1881 -TVEVVGKGKFKGVGR--SYRIAKSAAARRALRSLKANQPQV 1919
TV V KG+ G G+ S + A+ AA AL K N PQ+
Sbjct: 1261 YTVAVYFKGERIGCGKGPSIQQAEMGAAMDALE--KYNFPQM 1300
Score = 53.5 bits (127), Expect = 2e-06
Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 112/348 (32%)
Query: 1592 PVIKRTDREKALCPTRENFNSQQKNL---SVSCAAASVASSRSSVLKDSEYGCLKIPPRC 1648
P +K+TD++K +QKN V+ +S ++ + D + +P
Sbjct: 771 PKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP--V 828
Query: 1649 MFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYN----------TIT 1698
+ H + L HL +K I Y F+++ L A TH S+H N +++
Sbjct: 829 LTHHIRYHQCLMHL-------DKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLS 881
Query: 1699 DC--------------------------------------------YQRLEFLGDAILDY 1714
+C +RLEFLGDA++++
Sbjct: 882 NCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEF 941
Query: 1715 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY-FKAVSPELFHVIDDFV 1773
L + HLY G L R+A+V N A LA K + ++ A P+L
Sbjct: 942 LTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCR------ 995
Query: 1774 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQV 1833
+S+LR AM + FE+L GA+Y++ SLE Q+
Sbjct: 996 ------------ESDLRH---------------AMANCFEALIGAVYLEG--SLEEAKQL 1026
Query: 1834 YYPMM--RPLIEKFSANVPRSPV--------RELLEMEPETAKFSPAE 1871
+ ++ P + + N P P+ R+L+E P K + E
Sbjct: 1027 FGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFE 1074
Score = 48.9 bits (115), Expect = 5e-05
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 1296 LILQALTLSNASDGFNL------ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
L+ +A TL GFN +R+E LGDS ++ T YLF +PD HEG L+ +RS
Sbjct: 1086 LLARAFTLRTV--GFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSS 1143
Query: 1350 KVSNCNLYRLGKKKGL 1365
V+N ++ ++ G+
Sbjct: 1144 LVNNRTQAKVAEELGM 1159
Score = 38.1 bits (87), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
ERLE LGD+ ++ + +L+ +P EG L+ R+ V N +L L KK L M+
Sbjct: 929 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFML 986
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 65.5 bits (158), Expect = 5e-10
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 50/282 (17%)
Query: 1653 PDADKTL---NHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCY-QRLEFLG 1708
P+ D+ L + ++ FE+ I F + L +AFT + +N +T + QR+EFLG
Sbjct: 1091 PNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLG 1150
Query: 1709 DAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHV 1768
D+I+ + T++L+ H G LT LRS+LVNN A +A + +Y A++
Sbjct: 1151 DSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY--AIT------ 1202
Query: 1769 IDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMS-L 1827
D+ K K + D+ ES A+Y+D + +
Sbjct: 1203 -------------------------NDKTKRPVALRTKTLADLLESFIAALYIDKDLEYV 1237
Query: 1828 ETVWQV-YYPMMRPLIEKFSANVPRSPVRELL------EMEPETAKFSPAERTYDGKVRV 1880
T V ++P ++ I N P+S +++ EP+ + + R
Sbjct: 1238 HTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHART 1297
Query: 1881 -TVEVVGKGKFKGVGR--SYRIAKSAAARRALRSLKANQPQV 1919
TV V KG+ G G+ S + A+ AA AL K N PQ+
Sbjct: 1298 YTVAVYFKGERIGCGKGPSIQQAEMGAAMDALE--KYNFPQM 1337
Score = 53.5 bits (127), Expect = 2e-06
Identities = 78/348 (22%), Positives = 130/348 (37%), Gaps = 112/348 (32%)
Query: 1592 PVIKRTDREKALCPTRENFNSQQKNL---SVSCAAASVASSRSSVLKDSEYGCLKIPPRC 1648
P +K+TD++K +QKN V+ +S ++ + D + +P
Sbjct: 808 PKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLP--V 865
Query: 1649 MFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYN----------TIT 1698
+ H + L HL +K I Y F+++ L A TH S+H N +++
Sbjct: 866 LTHHIRYHQCLMHL-------DKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLS 918
Query: 1699 DC--------------------------------------------YQRLEFLGDAILDY 1714
+C +RLEFLGDA++++
Sbjct: 919 NCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEF 978
Query: 1715 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY-FKAVSPELFHVIDDFV 1773
L + HLY G L R+A+V N A LA K + ++ A P+L
Sbjct: 979 LTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCR------ 1032
Query: 1774 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQV 1833
+S+LR AM + FE+L GA+Y++ SLE Q+
Sbjct: 1033 ------------ESDLRH---------------AMANCFEALIGAVYLEG--SLEEAKQL 1063
Query: 1834 YYPMM--RPLIEKFSANVPRSPV--------RELLEMEPETAKFSPAE 1871
+ ++ P + + N P P+ R+L+E P K + E
Sbjct: 1064 FGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFE 1111
Score = 48.9 bits (115), Expect = 5e-05
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 1296 LILQALTLSNASDGFNL------ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
L+ +A TL GFN +R+E LGDS ++ T YLF +PD HEG L+ +RS
Sbjct: 1123 LLARAFTLRTV--GFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSS 1180
Query: 1350 KVSNCNLYRLGKKKGL 1365
V+N ++ ++ G+
Sbjct: 1181 LVNNRTQAKVAEELGM 1196
Score = 38.1 bits (87), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMV 1370
ERLE LGD+ ++ + +L+ +P EG L+ R+ V N +L L KK L M+
Sbjct: 966 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFML 1023
>gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
[Homo sapiens]
Length = 406
Score = 52.4 bits (124), Expect = 4e-06
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 461 IKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR-KQEEVLRKFRAHETNLLIAT 519
++ A ++P +SS + T + K Q + ++F+ K+ L KF+A ++L+AT
Sbjct: 215 LQRAALKNPVKCAVSSKYQT---VEKLQQYYIFIPSKFKSKRLGSLNKFKAKARSILLAT 271
Query: 520 SIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNYIMLADTDKIKSFEEDLKT 578
+ G+DIP ++VV FD+PT + Y+ GR ARA S + T + D++
Sbjct: 272 DVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT------QYDVEL 325
Query: 579 YKAIEKILRNK 589
++ IE ++ K
Sbjct: 326 FQRIEHLIGKK 336
>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Homo sapiens]
Length = 455
Score = 50.8 bits (120), Expect = 1e-05
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNYIML 563
L KF+A ++L+AT + G+DIP ++VV FD+PT + Y+ GR ARA S +
Sbjct: 306 LNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAIT 365
Query: 564 ADTDKIKSFEEDLKTYKAIEKILRNK 589
T + D++ ++ IE ++ K
Sbjct: 366 FVT------QYDVELFQRIEHLIGKK 385
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 50.1 bits (118), Expect = 2e-05
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISS--------NFITGHGIGKNQPRN 491
NI +++VE L L+ GK L ++ + +F+ G
Sbjct: 414 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHG 473
Query: 492 KQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
+ + R +EE L +FR+ ++ +L+AT++ G+DI V+ FDLP++ YV G
Sbjct: 474 DRSQ---RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 530
Query: 552 R 552
R
Sbjct: 531 R 531
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 48.1 bits (113), Expect = 8e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
R +EE L +FR+ ++ +L+AT++ G+DI V+ FDLP++ YV GR
Sbjct: 476 RDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 48.1 bits (113), Expect = 8e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
R +EE L +FR+ ++ +L+AT++ G+DI V+ FDLP++ YV GR
Sbjct: 476 RDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 48.1 bits (113), Expect = 8e-05
Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA----- 553
++++ ++R+FR+ + +LI T ++ G+D+ + +LV+ +DLPT +Y+ GR
Sbjct: 310 KERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGR 369
Query: 554 RAPISNYIMLADTDKIKSFEEDLKTY 579
+ N++ T++ K D++T+
Sbjct: 370 KGVAINFV----TEEDKRILRDIETF 391
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 47.8 bits (112), Expect = 1e-04
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
++++ ++R+FR+ + +LI T ++ G+D+ + +LV+ +DLPT +Y+ GR
Sbjct: 309 KERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 362
>gi|7661920 eukaryotic translation initiation factor 4A, isoform 3
[Homo sapiens]
Length = 411
Score = 46.6 bits (109), Expect = 2e-04
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
+++E ++++FR+ + +LI+T + G+D+P+ +L++ +DLP Y+ GR+
Sbjct: 314 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 368
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 45.8 bits (107), Expect = 4e-04
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARA-PISNY 560
E LR+F+ + ++L+AT + G+DI V+ F +P + YV GR ARA
Sbjct: 504 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 563
Query: 561 IMLADTDKIKSFEEDLKTYKA 581
+ L D+ K +E +K KA
Sbjct: 564 VSLVGEDERKMLKEIVKAAKA 584
>gi|187936946 hypothetical protein LOC84140 [Homo sapiens]
Length = 660
Score = 44.7 bits (104), Expect = 9e-04
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 326 VRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILR 385
+RE Q+ ++ +E+L ++ LLF + E+H+S +K L I
Sbjct: 535 MREYQRELEEREEKLKKRPLLFERVAQKNARMAAEKHYS-----------NTLKALGISD 583
Query: 386 KYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNF 434
++ + Q + +E++NN+ + D E +E+E+IEE+E E N+
Sbjct: 584 EFVSKKGQSGKVLEYFNNQETKSVTE--DKESFNEEEKIEERENGEENY 630
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
+ E R++E+ L FR + +L+ATS+ G+DI V+ FDLP+ YV GR
Sbjct: 573 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 630
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
+ E R++E+ L FR + +L+ATS+ G+DI V+ FDLP+ YV GR
Sbjct: 573 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 630
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
+ E R++E+ L FR + +L+ATS+ G+DI V+ FDLP+ YV GR
Sbjct: 539 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 596
>gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo
sapiens]
Length = 824
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 474 ISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNL 533
+SS I N +N++++A + K + +LI+T + G+D K NL
Sbjct: 329 LSSKGFPAECISGNMNQNQRLDA--------MAKLKHFHCRVLISTDLTSRGIDAEKVNL 380
Query: 534 VVRFDLPTEYRSYVQSKGRA 553
VV D+P ++ +Y+ GRA
Sbjct: 381 VVNLDVPLDWETYMHRIGRA 400
>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
Length = 859
Score = 42.7 bits (99), Expect = 0.003
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNY-IM 562
L +F E +L+AT + G+DIPK V+ + +P YV GR ARA +M
Sbjct: 630 LEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLM 689
Query: 563 LADTDKIKSFEEDLKTYKAIEKI 585
L + + +F++ KT K E I
Sbjct: 690 LIGPEDVINFKKIYKTLKKDEDI 712
>gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo
sapiens]
Length = 600
Score = 42.7 bits (99), Expect = 0.003
Identities = 16/53 (30%), Positives = 34/53 (64%)
Query: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
K+ ++ +FR ++ +L+ T ++ G+DIP+ N V+++D P+ ++V GR
Sbjct: 306 KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGR 358
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 42.7 bits (99), Expect = 0.003
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 499 RKQEEV-LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
+KQ E+ L+ FR +L+AT++ G+DIP+ +LV++ P + SY+ GR
Sbjct: 473 QKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 527
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 42.0 bits (97), Expect = 0.006
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 4 PALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAAL--DHNTI 61
PAL+P + + P LP +A + T + Q +L AAL D N +
Sbjct: 12 PALKPKPFGSEEQLLPVEK-------LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLL 64
Query: 62 VCLNTGSGKTFIAVL-LTKELSYQIR--GDFSRNGKRTVFLVNSANQVAQQVSAVRTHSD 118
+C TG+GKT +A++ + +E+ I G + + + +++ + V + V +
Sbjct: 65 LCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF----G 120
Query: 119 LKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNG----YLSLSDINLLVF 174
++ Y + + +E + Q+++ T + + G Y L + L+V
Sbjct: 121 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQL--VRLIVL 178
Query: 175 DECHL------AILDHPYREIMKLCENCPSCPRILGLTASILN 211
DE HL +L+ ++ E R++GL+A++ N
Sbjct: 179 DEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN 221
>gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo
sapiens]
Length = 483
Score = 42.0 bits (97), Expect = 0.006
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
+M E R + V FR L+ T + G+DI N+V+ FD P +Y+ GR
Sbjct: 367 KMRQEHRNR--VFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGR 424
Query: 553 A-----RAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDD 607
+ N I D +KS EE L T K + + KS+ E +PV D+
Sbjct: 425 SGRFGHLGLAINLITYDDRFNLKSIEEQLGTE---IKPIPSNIDKSLYVAEYHSEPVEDE 481
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 42.0 bits (97), Expect = 0.006
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
++E L+ FR +L+AT++ G+DIP+ +LV++ P + SY+ GR
Sbjct: 426 QREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGR 478
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 42.0 bits (97), Expect = 0.006
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 482 HGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPT 541
HG + R K +EA FR + ++L+AT + +G+D P V+ +D+P
Sbjct: 463 HGGKDQEERTKAIEA-----------FREGKKDVLVATDVASKGLDFPAIQHVINYDMPE 511
Query: 542 EYRSYVQSKGR 552
E +YV GR
Sbjct: 512 EIENYVHRIGR 522
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 42.0 bits (97), Expect = 0.006
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 1388 NQDKSNTDKWEKDEMTKDCMLANGKLDEDYEEEDEEEESLMWRAPKEEADYEDDFLEYDQ 1447
N+++ + E+DE ++ + ++DED EEE+EEEE +EE +YE D E DQ
Sbjct: 200 NEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQD--ERDQ 257
Query: 1448 -EHIRFIDNMLMGSGAFVKKISLSPFST-----TDSAYEWKMPKKSSLGSMPFSSD 1497
E D S + + +S + S TD + E K +K + G P D
Sbjct: 258 KEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFD 313
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,435,673
Number of Sequences: 37866
Number of extensions: 3765201
Number of successful extensions: 18958
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 18190
Number of HSP's gapped (non-prelim): 642
length of query: 1922
length of database: 18,247,518
effective HSP length: 117
effective length of query: 1805
effective length of database: 13,817,196
effective search space: 24940038780
effective search space used: 24940038780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.