Guide to the Human Genome
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Name: DICER1 Sequence: fasta or formatted (1922aa) NCBI GI: 29294649
Description:

dicer1

Referenced in:

DEAD / H Helicase Family
MicroRNAs
RNases and RNA Stability
Stem Cells and Early Development

Other entries for this name:
alt mRNA [1922aa] dicer1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        110           3
 C cysteine            2.5         48           2
 D aspartate           6.5        124           4
 E glutamate           7.9        151           4
 F phenylalanine       3.9         74           2
 G glycine             4.3         82           2
 H histidine           2.2         42           1
 I isoleucine          5.1         98           2
 K lysine              6.6        127           3
 L leucine            10.2        197           2
 M methionine          2.2         42           2
 N asparagine          4.7         91           2
 P proline             5.9        113           2
 Q glutamine           3.4         65           2
 R arginine            5.1         98           3
 S serine              8.1        155           3
 T threonine           5.1         98           2
 V valine              5.6        108           2
 W tryptophan          0.8         16           1
 Y tyrosine            4.3         83           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dicer1 
DICER1                1.000   dicer1 
DDX58                 0.023   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [...
DHX58                 0.019   RNA helicase LGP2 
IFIH1                 0.014   interferon induced with helicase C domain 1 
FANCM                 0.011   Fanconi anemia, complementation group M 
RNASEN                0.010   ribonuclease III, nuclear isoform 2 
RNASEN                0.010   ribonuclease III, nuclear isoform 1 
DDX47                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX47                 0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX3X                 0.006   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX3Y                 0.006   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.006   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
EIF4A2                0.006   eukaryotic translation initiation factor 4A2 
EIF4A1                0.006   eukaryotic translation initiation factor 4A isoform 1...
EIF4A3                0.006   eukaryotic translation initiation factor 4A, isoform ...
DDX27                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
FAM161A               0.005   hypothetical protein LOC84140 
DDX4                  0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX20                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX24                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
DDX55                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
DDX21                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
LOC652147             0.004   PREDICTED: similar to U5 snRNP-specific 200kD prote...
DDX6                  0.004   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX50                 0.004   nucleolar protein GU2 
DDX41                 0.004   DEAD-box protein abstrakt 
YTHDC1                0.004   splicing factor YT521-B isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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