Guide to the Human Genome
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Name: ABCA5 Sequence: fasta or formatted (1642aa) NCBI GI: 27262626
Description:

ATP-binding cassette, sub-family A , member 5

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt mRNA [1642aa] ATP-binding cassette, sub-family A , member 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         91           2
 C cysteine            1.6         26           2
 D aspartate           4.3         70           3
 E glutamate           6.2        101           3
 F phenylalanine       6.3        104           2
 G glycine             4.6         76           2
 H histidine           1.9         32           2
 I isoleucine          8.6        141           3
 K lysine              7.2        119           2
 L leucine            11.4        188           5
 M methionine          3.1         51           2
 N asparagine          3.4         56           2
 P proline             3.8         62           2
 Q glutamine           3.5         57           2
 R arginine            2.7         44           2
 S serine              8.9        146           3
 T threonine           5.1         84           2
 V valine              6.6        108           2
 W tryptophan          1.3         22           2
 Y tyrosine            3.9         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family A , member 5 
ABCA5                 1.000   ATP-binding cassette, sub-family A , member 5 
ABCA9                 0.370   ATP-binding cassette, sub-family A, member 9 
ABCA10                0.361   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA6                 0.359   ATP-binding cassette, sub-family A, member 6 
ABCA8                 0.355   ATP-binding cassette, sub-family A member 8 
ABCA3                 0.158   ATP-binding cassette, sub-family A member 3 
ABCA2                 0.085   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.085   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA13                0.085   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA1                 0.084   ATP-binding cassette, sub-family A member 1 
ABCA12                0.082   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.082   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA4                 0.077   ATP-binding cassette, sub-family A member 4 
ABCA7                 0.076   ATP-binding cassette, sub-family A, member 7 
LOC342293             0.029   PREDICTED: similar to hCG18626 
LOC342293             0.029   PREDICTED: similar to hCG18626 
LOC342293             0.029   PREDICTED: similar to hCG18626 
ABCB1                 0.022   ATP-binding cassette, subfamily B, member 1 
ABCB10                0.020   ATP-binding cassette, sub-family B, member 10 [Homo...
ABCB4                 0.020   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.020   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.020   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB11                0.018   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB9                 0.018   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.018   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.018   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB5                 0.018   ATP-binding cassette, sub-family B, member 5 
ABCG1                 0.018   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.018   ATP-binding cassette sub-family G member 1 isoform 6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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