Guide to the Human Genome
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Name: ABCA13 Sequence: fasta or formatted (5058aa) NCBI GI: 31657092
Description:

ATP binding cassette, sub-family A (ABC1), member 13

Referenced in:

ATP-binding Cassette Proteins
Protein Composition and Structure

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6        234           2
 C cysteine            1.6         83           2
 D aspartate           4.5        226           2
 E glutamate           6.0        302           3
 F phenylalanine       6.2        313           3
 G glycine             4.2        212           2
 H histidine           2.8        144           2
 I isoleucine          6.3        318           3
 K lysine              5.7        290           2
 L leucine            14.0        710           4
 M methionine          2.4        119           2
 N asparagine          5.8        295           2
 P proline             3.4        171           2
 Q glutamine           4.8        245           3
 R arginine            3.1        158           2
 S serine              8.9        452           3
 T threonine           5.7        290           2
 V valine              5.8        295           2
 W tryptophan          1.6         81           1
 Y tyrosine            2.4        120           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP binding cassette, sub-family A (ABC1), member 13... 
ABCA12                0.142   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.142   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA1                 0.104   ATP-binding cassette, sub-family A member 1 
ABCA4                 0.101   ATP-binding cassette, sub-family A member 4 
ABCA7                 0.095   ATP-binding cassette, sub-family A, member 7 
ABCA2                 0.049   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.049   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA3                 0.040   ATP-binding cassette, sub-family A member 3 
ABCA8                 0.039   ATP-binding cassette, sub-family A member 8 
ABCA5                 0.027   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.027   ATP-binding cassette, sub-family A , member 5 
ABCA10                0.025   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA9                 0.023   ATP-binding cassette, sub-family A, member 9 
ABCA6                 0.023   ATP-binding cassette, sub-family A, member 6 
LOC342293             0.012   PREDICTED: similar to hCG18626 
LOC342293             0.012   PREDICTED: similar to hCG18626 
LOC342293             0.012   PREDICTED: similar to hCG18626 
ABCG4                 0.006   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.006   ATP-binding cassette, subfamily G, member 4 
ABCB1                 0.006   ATP-binding cassette, subfamily B, member 1 
ABCB4                 0.006   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.006   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.006   ATP-binding cassette sub-family G member 1 isoform 2...
ABCG2                 0.006   ATP-binding cassette, sub-family G, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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