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Search of human proteins with 24497547
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497547 homeobox C9 [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497547 homeobox C9 [Homo sapiens] 547 e-156
gi|194363768 homeobox D9 [Homo sapiens] 252 3e-67
gi|23097236 homeobox A9 [Homo sapiens] 239 2e-63
gi|15029508 homeobox B9 [Homo sapiens] 227 7e-60
gi|24497533 homeobox C10 [Homo sapiens] 137 7e-33
gi|182765442 homeobox A10 isoform a [Homo sapiens] 136 2e-32
gi|23510366 homeobox D10 [Homo sapiens] 134 6e-32
gi|24497551 homeobox A10 isoform b [Homo sapiens] 124 1e-28
gi|5031759 homeobox A11 [Homo sapiens] 104 7e-23
gi|13489077 homeobox A6 [Homo sapiens] 100 1e-21
gi|7657166 homeobox C11 [Homo sapiens] 100 2e-21
gi|23510368 homeobox D11 [Homo sapiens] 99 3e-21
gi|11321638 homeobox C5 [Homo sapiens] 97 2e-20
gi|85068580 homeobox B7 [Homo sapiens] 94 9e-20
gi|23503237 homeobox B6 [Homo sapiens] 94 9e-20
gi|24497517 homeobox A5 [Homo sapiens] 94 2e-19
gi|12056969 homeobox C8 [Homo sapiens] 94 2e-19
gi|13273317 homeobox B8 [Homo sapiens] 92 3e-19
gi|15029506 homeobox D8 [Homo sapiens] 91 8e-19
gi|23397672 homeobox D4 [Homo sapiens] 91 1e-18
gi|24497556 homeobox A7 [Homo sapiens] 90 2e-18
gi|4504469 homeobox B5 [Homo sapiens] 89 3e-18
gi|24497538 homeobox C4 [Homo sapiens] 89 4e-18
gi|24497540 homeobox C4 [Homo sapiens] 89 4e-18
gi|62865866 homeobox B13 [Homo sapiens] 88 9e-18
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 87 1e-17
gi|148613882 homeobox A4 [Homo sapiens] 85 6e-17
gi|10140847 homeobox A2 [Homo sapiens] 84 9e-17
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 84 9e-17
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 84 9e-17
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 547 bits (1409), Expect = e-156
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 60
MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA
Sbjct: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 60
Query: 61 VFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKP 120
VFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKP
Sbjct: 61 VFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKP 120
Query: 121 DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPS 180
DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPS
Sbjct: 121 DAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPS 180
Query: 181 NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF 240
NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF
Sbjct: 181 NPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWF 240
Query: 241 QNRRMKMKKMNKEKTDKEQS 260
QNRRMKMKKMNKEKTDKEQS
Sbjct: 241 QNRRMKMKKMNKEKTDKEQS 260
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 252 bits (643), Expect = 3e-67
Identities = 157/341 (46%), Positives = 188/341 (55%), Gaps = 85/341 (24%)
Query: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGL----VPDCSDFPSCSFA 56
MS++G +SNYYVDSLI H+ +++ A+RF G A RP+G+ ++F SCSFA
Sbjct: 11 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGP-GAQGRPAGVADGPAATAAEFASCSFA 69
Query: 57 PKPAVFSTSWAPVPSQ------SSVVYHPYGPQPHLGADT----RYMRTWLEPL------ 100
P+ AVFS SW+ VPSQ S +YHPY P P L A RY+R+W+EPL
Sbjct: 70 PRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGG 129
Query: 101 -------------SGAVSFPSFPAGGRHYALKPD---------------------AYPGR 126
G PS PA GRHY +KP+ + +
Sbjct: 130 AGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSK 189
Query: 127 RADCG---PGEGRSYPDYMYGS--------------PGELRDRAPQTLPSPEADA----- 164
R +C +G S P++ S PG A T S E A
Sbjct: 190 RTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHP 249
Query: 165 LAGSKHKEE--------KADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 216
+ G KEE + LDP+NP ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY
Sbjct: 250 IPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 309
Query: 217 LTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDK 257
LTRDRRYEVAR+LNLTERQVKIWFQNRRMKMKKM+KEK K
Sbjct: 310 LTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPK 350
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 239 bits (609), Expect = 2e-63
Identities = 136/275 (49%), Positives = 165/275 (60%), Gaps = 20/275 (7%)
Query: 1 MSATGPISNYYVDS-LISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKP 59
M+ TG + NYYVDS L+ D D L+ A G R + + + DF CSF K
Sbjct: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
Query: 60 AVFSTSWAPVPSQSS-----VVYH---------PYGPQPHLGADTRYMRTWLEPLSGAVS 105
VF SW PV + + VYH P P D RYMR+WLEP GA+S
Sbjct: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
Query: 106 FPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPEAD 163
F P+ R Y +KP+ RR DC + S DY GSP R++ P E +
Sbjct: 121 FAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENN 179
Query: 164 ALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRY 223
A ++ +K +DP+NP ANW+HARSTRKKRCPYTK+QTLELEKEFLFNMYLTRDRRY
Sbjct: 180 A--ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
Query: 224 EVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
EVAR+LNLTERQVKIWFQNRRMKMKK+NK++ E
Sbjct: 238 EVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 227 bits (579), Expect = 7e-60
Identities = 134/262 (51%), Positives = 170/262 (64%), Gaps = 23/262 (8%)
Query: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA 60
MS +G +S+YYVDS+ISH++ED ++FP+ G + ++ +P + +FPSCSF PK
Sbjct: 1 MSISGTLSSYYVDSIISHESEDAPPAKFPS-GQYASSRQPGHA--EHLEFPSCSFQPKAP 57
Query: 61 VFSTSWAPVPSQSS----VVYHPY-GPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH 115
VF SWAP+ +S VYHPY PQ A++RY+RTWLEP + P G
Sbjct: 58 VFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAP----GQGQ 113
Query: 116 YALKPDAYPGRRADCGPGE--GRSYPDY-MYGSPGELRDRAPQTLPSPEADALAGSKHKE 172
A+K + G PGE + P+Y + S G + Q + GS+ KE
Sbjct: 114 AAVKAEPLLG-----APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKE 168
Query: 173 EKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLT 232
D +NP ANW+HARS+RKKRCPYTKYQTLELEKEFLFNMYLTRDRR+EVAR+LNL+
Sbjct: 169 RP---DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLS 225
Query: 233 ERQVKIWFQNRRMKMKKMNKEK 254
ERQVKIWFQNRRMKMKKMNKE+
Sbjct: 226 ERQVKIWFQNRRMKMKKMNKEQ 247
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 137 bits (346), Expect = 7e-33
Identities = 87/208 (41%), Positives = 111/208 (53%), Gaps = 34/208 (16%)
Query: 68 PVPS--QSSVVYHPYGPQPHLGADTRY-----MRTWLEP---------LSGAVSFPSFPA 111
PVPS ++S Y PH + R L P L G VSFP P
Sbjct: 144 PVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPK 203
Query: 112 GGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGEL-RDRAPQTLPSPEADALAGSKH 170
P+ ++ GP GSP E ++RA SP+ +
Sbjct: 204 SDSQTP-SPNEIKTEQSLAGPK----------GSPSESEKERAKAADSSPD------TSD 246
Query: 171 KEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLN 230
E K ++ N NW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +N
Sbjct: 247 NEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTIN 306
Query: 231 LTERQVKIWFQNRRMKMKKMNKEKTDKE 258
LT+RQVKIWFQNRRMK+KKMN+E +E
Sbjct: 307 LTDRQVKIWFQNRRMKLKKMNRENRIRE 334
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 136 bits (342), Expect = 2e-32
Identities = 80/177 (45%), Positives = 102/177 (57%), Gaps = 31/177 (17%)
Query: 102 GAVSFPSFPAGGRHYALKP----------------DAYPGRRADCGPGEGRSYPDYMYGS 145
GA FP+ P G R + L P D+ P CG G G + + S
Sbjct: 237 GAGPFPAQPPG-RGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHAS 295
Query: 146 PGELRDRAP----QTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTK 201
+ +P + SPE D+L SK + ANW+ A+S RKKRCPYTK
Sbjct: 296 SSAAEELSPAPSESSKASPEKDSLGNSKGEN----------AANWLTAKSGRKKRCPYTK 345
Query: 202 YQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNRRMK+KKMN+E +E
Sbjct: 346 HQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRE 402
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 134 bits (338), Expect = 6e-32
Identities = 66/120 (55%), Positives = 86/120 (71%), Gaps = 6/120 (5%)
Query: 139 PDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCP 198
P+ G P E A ++ SPE + KE K ++ P +NW+ A+S RKKRCP
Sbjct: 219 PEAKGGLPEERSCLAEVSVSSPEV------QEKESKEEIKSDTPTSNWLTAKSGRKKRCP 272
Query: 199 YTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
YTK+QTLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KKM++E +E
Sbjct: 273 YTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRE 332
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 124 bits (310), Expect = 1e-28
Identities = 56/75 (74%), Positives = 68/75 (90%)
Query: 184 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNR 243
ANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNR
Sbjct: 12 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
Query: 244 RMKMKKMNKEKTDKE 258
RMK+KKMN+E +E
Sbjct: 72 RMKLKKMNRENRIRE 86
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 104 bits (260), Expect = 7e-23
Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 13/105 (12%)
Query: 150 RDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEK 209
R R P++ SPE+ S H E+KA + TRKKRCPYTKYQ ELE+
Sbjct: 212 RRRRPESSSSPESS----SGHTEDKA---------GGSSGQRTRKKRCPYTKYQIRELER 258
Query: 210 EFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254
EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+++
Sbjct: 259 EFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 100 bits (250), Expect = 1e-21
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 146 PGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARST----------RKK 195
PG+ +P+ P++ + G +E AD ++PV W+ ++ R+
Sbjct: 99 PGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRG 158
Query: 196 RCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 252
R YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 159 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 100 bits (248), Expect = 2e-21
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 131 GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHAR 190
G GE + P+ S R A + E + S +P+ A +A
Sbjct: 173 GKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAP--NAP 230
Query: 191 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 250
TRKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+
Sbjct: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
Query: 251 NKEK 254
++++
Sbjct: 291 SRDR 294
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 99.4 bits (246), Expect = 3e-21
Identities = 41/63 (65%), Positives = 57/63 (90%)
Query: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMN 251
+RKKRCPYTKYQ ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N
Sbjct: 266 SRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLN 325
Query: 252 KEK 254
+++
Sbjct: 326 RDR 328
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 96.7 bits (239), Expect = 2e-20
Identities = 67/167 (40%), Positives = 86/167 (51%), Gaps = 20/167 (11%)
Query: 107 PSFPAGGRHYALKPDAYPGR---RADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEAD 163
PS G A P A+P R A PG + +PG +A + P+ E
Sbjct: 54 PSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAAR--PALEER 111
Query: 164 ALAGSKHKEEKADLD--------PSNP-VANWI------HARSTRKKRCPYTKYQTLELE 208
A + + KEE+A P+ P + W+ H ++ R YT+YQTLELE
Sbjct: 112 AKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELE 171
Query: 209 KEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKT 255
KEF FN YLTR RR E+A L L ERQ+KIWFQNRRMK KK +K K+
Sbjct: 172 KEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKS 218
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 94.4 bits (233), Expect = 9e-20
Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 29/210 (13%)
Query: 48 SDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFP 107
S +P+ S +VF+T P + + +P P G+ + + G
Sbjct: 12 SKYPASS-----SVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMA 66
Query: 108 SFPAGGRH---YALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADA 164
A G + Y L+P ++ C P E P A A
Sbjct: 67 GQSAAGVYAAGYGLEPSSF---NMHCAPFE----------------QNLSGVCPGDSAKA 107
Query: 165 LAGSKHKEEKADLDPSNPVANWIHARSTRKKRC--PYTKYQTLELEKEFLFNMYLTRDRR 222
+ ++ + + + W+ + T +KR YT+YQTLELEKEF +N YLTR RR
Sbjct: 108 AGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 167
Query: 223 YEVARVLNLTERQVKIWFQNRRMKMKKMNK 252
E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 168 IEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 94.4 bits (233), Expect = 9e-20
Identities = 71/186 (38%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 79 PYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRS- 137
PYGP P G D + + P PAGG + GR A C G +
Sbjct: 42 PYGPGP--GQDKGFATSSYYP----------PAGGGY---------GRAAPCDYGPAPAF 80
Query: 138 YPDYMYGSPGELRDRAPQTLPSPEADALAGSKHK-EEKADLDPSNPVANWIHARST---- 192
Y + D P P P A K E + S PV W+ ++
Sbjct: 81 YREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSS 140
Query: 193 ------RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMK 246
R+ R YT+YQTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK
Sbjct: 141 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 200
Query: 247 MKKMNK 252
KK +K
Sbjct: 201 WKKESK 206
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 93.6 bits (231), Expect = 2e-19
Identities = 70/198 (35%), Positives = 94/198 (47%), Gaps = 29/198 (14%)
Query: 85 HLGADTRYMRTWLEPLSGAVSFPSF--PAGGRHYALKPDAYPGRRADCGPGEGRSY--PD 140
H G+ R R++ S A + P + PA H + +PD P PG + +
Sbjct: 63 HFGSGER-ARSYAASASAAPAEPRYSQPATSTH-SPQPDPLPCSAVAPSPGSDSHHGGKN 120
Query: 141 YMYGSPGELRDRAPQTLPSPEA---------DALAGSKHKEEKADLDPSNPVANWIH--- 188
+ S G D + S E DA A S+ +++ P+ P I+
Sbjct: 121 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM 180
Query: 189 -----------ARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVK 237
++ R YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+K
Sbjct: 181 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK 240
Query: 238 IWFQNRRMKMKKMNKEKT 255
IWFQNRRMK KK NK K+
Sbjct: 241 IWFQNRRMKWKKDNKLKS 258
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 93.6 bits (231), Expect = 2e-19
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 5/99 (5%)
Query: 160 PEADALAGSKHKEEKADLDPSNPVA---NWI--HARSTRKKRCPYTKYQTLELEKEFLFN 214
P+ + A + E + L+ ++ + W+ HA R R Y++YQTLELEKEFLFN
Sbjct: 112 PDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFN 171
Query: 215 MYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKE 253
YLTR RR EV+ L LTERQVKIWFQNRRMK KK N +
Sbjct: 172 PYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 210
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 92.4 bits (228), Expect = 3e-19
Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 164 ALAGSKHKEEKADLDPS-NPVANWIH---ARSTRKKRCPYTKYQTLELEKEFLFNMYLTR 219
A +G + E ++ PS + W+ A R+ R Y++YQTLELEKEFLFN YLTR
Sbjct: 114 AASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTR 173
Query: 220 DRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKE 253
RR EV+ L LTERQVKIWFQNRRMK KK N +
Sbjct: 174 KRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 207
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 91.3 bits (225), Expect = 8e-19
Identities = 85/271 (31%), Positives = 122/271 (45%), Gaps = 37/271 (13%)
Query: 7 ISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPA------ 60
+S+Y+V+ L S ++ A A AAA + P D C FAP+
Sbjct: 1 MSSYFVNPLYS---------KYKAAAA-AAAAAGEAINPTYYD---CHFAPEVGGRHAAA 47
Query: 61 -----VFSTSWAP---VPSQSSVVYHPYGPQPHLGADTRYMR--TWLEPLSG--AVSFPS 108
++ S A P Q+ HP P G R R + P G A ++ +
Sbjct: 48 AAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQA 107
Query: 109 FPAGGRHYALKPDAYPGRRADCGPGEGRSYP-DYMYGSPGELRDRAPQTLPSPEADALAG 167
P H P P C + Y D + P + + + P+ + +G
Sbjct: 108 APPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG 167
Query: 168 SKHKEEKADLDPSNP--VANWIHARST---RKKRCPYTKYQTLELEKEFLFNMYLTRDRR 222
+ ++ S+P + W+ ++ R+ R Y+++QTLELEKEFLFN YLTR RR
Sbjct: 168 NIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRR 227
Query: 223 YEVARVLNLTERQVKIWFQNRRMKMKKMNKE 253
EV+ L LTERQVKIWFQNRRMK KK N +
Sbjct: 228 IEVSHALALTERQVKIWFQNRRMKWKKENNK 258
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 90.5 bits (223), Expect = 1e-18
Identities = 61/146 (41%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 131 GPGEGRSYPDYMYGSPGEL--RDRAPQTLPSPEADALAGSKHKEEKADLDPSNP--VANW 186
G G+ P Y +PGE AP P P A A + S K+ + P V W
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPW 136
Query: 187 ---IHARST---------RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTER 234
+H S ++ R YT+ Q LELEKEF FN YLTR RR E+A L L+ER
Sbjct: 137 MKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSER 196
Query: 235 QVKIWFQNRRMKMKKMNKEKTDKEQS 260
Q+KIWFQNRRMK KK +K K +S
Sbjct: 197 QIKIWFQNRRMKWKKDHKLPNTKGRS 222
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 90.1 bits (222), Expect = 2e-18
Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 155 QTLPSPEADALAGSKHKEEKADL----DPSNPVANWIHARSTRKKRC--PYTKYQTLELE 208
Q +P +D G+ K ++ L + + + W+ + +KR YT+YQTLELE
Sbjct: 87 QNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELE 146
Query: 209 KEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254
KEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK +K++
Sbjct: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDE 192
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 89.4 bits (220), Expect = 3e-18
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 252
++ R YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
Query: 253 EKT 255
K+
Sbjct: 255 LKS 257
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 89.0 bits (219), Expect = 4e-18
Identities = 61/167 (36%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 107 PSFPAGGRHYALKPDAYPGRRADCGPGE-GRSYPDYMYG--SPGELRDRAPQTLPSPEAD 163
PS+P R Y+ PG GP + G +P+ P L + P+P A
Sbjct: 60 PSYPE--RQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC 117
Query: 164 ALAGSKHKEEKADLDPS-NPVANWIHARST---------RKKRCPYTKYQTLELEKEFLF 213
+ H A P P IH + ++ R YT+ Q LELEKEF +
Sbjct: 118 SQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
Query: 214 NMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 260
N YLTR RR E+A L L+ERQ+KIWFQNRRMK KK ++ K +S
Sbjct: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS 224
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 89.0 bits (219), Expect = 4e-18
Identities = 61/167 (36%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 107 PSFPAGGRHYALKPDAYPGRRADCGPGE-GRSYPDYMYG--SPGELRDRAPQTLPSPEAD 163
PS+P R Y+ PG GP + G +P+ P L + P+P A
Sbjct: 60 PSYPE--RQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC 117
Query: 164 ALAGSKHKEEKADLDPS-NPVANWIHARST---------RKKRCPYTKYQTLELEKEFLF 213
+ H A P P IH + ++ R YT+ Q LELEKEF +
Sbjct: 118 SQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
Query: 214 NMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 260
N YLTR RR E+A L L+ERQ+KIWFQNRRMK KK ++ K +S
Sbjct: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRS 224
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 87.8 bits (216), Expect = 9e-18
Identities = 80/272 (29%), Positives = 122/272 (44%), Gaps = 45/272 (16%)
Query: 12 VDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCS----DFPSCSFAPKPAVFSTSWA 67
++ L+ L + P T +HPAA L+P + D P + PK
Sbjct: 15 IEGLLGAGGGRNLVAHSPLT-SHPAAPT---LMPAVNYAPLDLPGSAEPPKQC---HPCP 67
Query: 68 PVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPA----GGRHYALKPDA- 122
VP +S PYG R R+ L+P + A + ++PA G Y +P
Sbjct: 68 GVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEF 127
Query: 123 --YPGRRADCGPGEGRSYPDYM-------YGSPGELRDRAPQTLPSPEADALAGSKHKEE 173
YPG PG + Y+ G+PGE R + + S ++ ALAG + +
Sbjct: 128 AFYPGY-----PGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQM 182
Query: 174 KADLDPSNPVANWIHA---------------RSTRKKRCPYTKYQTLELEKEFLFNMYLT 218
+ + P W A R RKKR PY+K Q ELE+E+ N ++T
Sbjct: 183 CCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFIT 242
Query: 219 RDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 250
+D+R +++ +L+ERQ+ IWFQNRR+K KK+
Sbjct: 243 KDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 87.0 bits (214), Expect = 1e-17
Identities = 66/187 (35%), Positives = 90/187 (48%), Gaps = 31/187 (16%)
Query: 77 YHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRH-YALKPDAYPGRRADCGPGEG 135
+H + Q H T W P S P+ RH L+PD+ GP E
Sbjct: 77 HHHHQQQQHQALQTN----WHLP-----QMSSPPSAARHSLCLQPDSG-------GPPEL 120
Query: 136 RSYPDYMYGSPGELRDRAP------------QTLPSPEADALAGSKHKEEKADLDPSNPV 183
S P + + L P Q L EA+ +G K K + +D N
Sbjct: 121 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK 180
Query: 184 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNR 243
+ ++++ RK+R +TK Q ELE EF + YLTR RRYE+A L+LTERQVK+WFQNR
Sbjct: 181 SE-VNSKP-RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNR 238
Query: 244 RMKMKKM 250
RMK K++
Sbjct: 239 RMKWKRV 245
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 85.1 bits (209), Expect = 6e-17
Identities = 63/151 (41%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 118 LKPDAYPG---RRADCGPGE-----GRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSK 169
L+P A P RR + P G S P P L D++P L E K
Sbjct: 144 LQPRAVPPAAPRRCEAAPATPGVPAGGSAP----ACPLLLADKSPLGLKGKEPVVYPWMK 199
Query: 170 HKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVL 229
K + NP N ++ R YT+ Q LELEKEF FN YLTR RR E+A L
Sbjct: 200 ----KIHVSAVNPSYN---GGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 252
Query: 230 NLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 260
L+ERQVKIWFQNRRMK KK +K K +S
Sbjct: 253 CLSERQVKIWFQNRRMKWKKDHKLPNTKMRS 283
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 84.3 bits (207), Expect = 9e-17
Identities = 62/159 (38%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 105 SFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADA 164
S P AGGR KP G R P P+Y + + + LP+ A A
Sbjct: 63 SHPRHGAGGRP---KPSP-AGSRGSPVPAGALQPPEYPWMKEKKAAKKTA-LLPAAAAAA 117
Query: 165 LAGS------KHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLT 218
A + HKE D S +R+ R YT Q LELEKEF FN YL
Sbjct: 118 TAAATGPACLSHKESLEIADGSGG--------GSRRLRTAYTNTQLLELEKEFHFNKYLC 169
Query: 219 RDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDK 257
R RR E+A +L+LTERQVK+WFQNRRMK K+ + K ++
Sbjct: 170 RPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 84.3 bits (207), Expect = 9e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249
R+ R Y++YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 116
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 84.3 bits (207), Expect = 9e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Query: 193 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249
R+ R Y++YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,444,367
Number of Sequences: 37866
Number of extensions: 715605
Number of successful extensions: 2651
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 2252
Number of HSP's gapped (non-prelim): 437
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.