Guide to the Human Genome
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Name: LOC100293904 Sequence: fasta or formatted (256aa) NCBI GI: 239758088
Description:

PREDICTED: similar to leucocyte immunoglobulin-like receptor, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         12           1
 C cysteine            3.5          9           2
 D aspartate           3.5          9           1
 E glutamate           4.7         12           1
 F phenylalanine       2.3          6           1
 G glycine             8.6         22           2
 H histidine           2.7          7           1
 I isoleucine          4.3         11           1
 K lysine              3.9         10           2
 L leucine            10.9         28           2
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline             9.4         24           1
 Q glutamine           4.3         11           1
 R arginine            4.7         12           2
 S serine             11.3         29           2
 T threonine           6.2         16           1
 V valine              7.8         20           2
 W tryptophan          2.0          5           1
 Y tyrosine            3.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to leucocyte immunoglobulin-like... 
LILRA3                0.976   leukocyte immunoglobulin-like receptor, subfamily A ...
LILRB1                0.843   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.843   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.843   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.843   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA1                0.809   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA2                0.791   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.791   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRB2                0.768   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.768   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA6                0.537   leukocyte immunoglobulin-like receptor, subfamily A...
LILRB3                0.535   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.535   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA4                0.494   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.476   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.476   leukocyte immunoglobulin-like receptor, subfamily B, ...
LILRA5                0.427   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.425   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.380   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.368   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.366   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB4                0.362   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB4                0.362   leukocyte immunoglobulin-like receptor, subfamily B...
KIR3DL1               0.262   killer cell immunoglobulin-like receptor, three dom...
KIR3DS1               0.250   killer cell immunoglobulin-like receptor, three dom...
KIR3DL3               0.244   killer cell immunoglobulin-like receptor, three doma...
KIR3DL2               0.240   killer cell immunoglobulin-like receptor, three dom...
GP6                   0.236   glycoprotein VI (platelet) isoform 1 
GP6                   0.236   glycoprotein VI (platelet) isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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