Guide to the Human Genome
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Name: LOC100293773 Sequence: fasta or formatted (303aa) NCBI GI: 239757333
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         34           3
 C cysteine            1.7          5           1
 D aspartate           2.3          7           1
 E glutamate           4.3         13           1
 F phenylalanine       1.7          5           1
 G glycine            11.2         34           4
 H histidine           2.0          6           1
 I isoleucine          1.0          3           1
 K lysine              2.0          6           1
 L leucine             8.3         25           2
 M methionine          2.0          6           1
 N asparagine          1.3          4           1
 P proline             7.9         24           2
 Q glutamine           5.0         15           1
 R arginine           11.6         35           3
 S serine             10.2         31           3
 T threonine           6.6         20           2
 V valine              5.3         16           1
 W tryptophan          3.6         11           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287376          0.990   PREDICTED: hypothetical protein 
LOC100287376          0.990   PREDICTED: hypothetical protein XP_002343731 
COL1A2                0.017   alpha 2 type I collagen 
LOC652586             0.017   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100290743          0.017   PREDICTED: hypothetical protein XP_002346688 
SOX11                 0.015   SRY-box 11 
ZC3H18                0.015   zinc finger CCCH-type containing 18 
RIN2                  0.015   Ras and Rab interactor 2 
COL3A1                0.013   collagen type III alpha 1 preproprotein 
AGRN                  0.013   agrin 
LOC727804             0.013   PREDICTED: hypothetical protein 
MAGI2                 0.013   membrane associated guanylate kinase, WW and PDZ dom...
IER5L                 0.013   immediate early response 5-like 
COL2A1                0.012   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.012   collagen, type II, alpha 1 isoform 2 precursor [Hom...
MUC16                 0.012   mucin 16 
LOC100293202          0.012   PREDICTED: similar to CTL-recognized antigen on mel...
LOC643355             0.012   PREDICTED: hypothetical protein 
LOC643355             0.012   PREDICTED: hypothetical protein 
LOC643355             0.012   PREDICTED: hypothetical protein 
NOTCH4                0.012   notch4 preproprotein 
COL1A1                0.010   alpha 1 type I collagen preproprotein 
ZNF579                0.010   zinc finger protein 579 
LOC100293409          0.010   PREDICTED: similar to Mucin-19 
LOC100289661          0.010   PREDICTED: hypothetical protein 
LOC100291118          0.010   PREDICTED: hypothetical protein XP_002347351 
LOC100289661          0.010   PREDICTED: hypothetical protein XP_002343723 
LOC728046             0.010   PREDICTED: hypothetical protein 
LOC100287737          0.010   PREDICTED: hypothetical protein XP_002343203 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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