Guide to the Human Genome
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Name: LOC100293653 Sequence: fasta or formatted (241aa) NCBI GI: 239756851
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         28           2
 C cysteine            2.1          5           2
 D aspartate           3.7          9           2
 E glutamate           4.1         10           2
 F phenylalanine       1.2          3           1
 G glycine            10.4         25           2
 H histidine           5.8         14           1
 I isoleucine          1.2          3           1
 K lysine              2.5          6           1
 L leucine            11.6         28           2
 M methionine          2.1          5           1
 N asparagine          0.4          1           1
 P proline             5.8         14           1
 Q glutamine           7.1         17           2
 R arginine           11.6         28           2
 S serine              5.4         13           1
 T threonine           5.4         13           1
 V valine              5.0         12           2
 W tryptophan          1.7          4           2
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291017          1.000   PREDICTED: hypothetical protein XP_002347813 
LOC100288091          1.000   PREDICTED: hypothetical protein XP_002343603 
LOC100289978          0.019   PREDICTED: hypothetical protein XP_002348035 
LOC100291802          0.017   PREDICTED: hypothetical protein XP_002346199 
LOC100291215          0.017   PREDICTED: hypothetical protein XP_002347079 
LOC100287684          0.017   PREDICTED: hypothetical protein XP_002342945 
LOC100129098          0.015   PREDICTED: hypothetical protein 
LOC100129098          0.015   PREDICTED: hypothetical protein 
LOC100293769          0.011   PREDICTED: hypothetical protein 
LOC100291339          0.011   PREDICTED: hypothetical protein XP_002347364 
LOC100287626          0.011   PREDICTED: hypothetical protein XP_002343250 
AIM1                  0.011   absent in melanoma 1 
C16orf86              0.011   hypothetical protein LOC388284 
HRNR                  0.008   hornerin 
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.008   nuclear receptor binding SET domain protein 1 isofor...
RNF19B                0.008   ring finger protein 19B isoform a 
RNF19B                0.008   ring finger protein 19B isoform b 
TUB                   0.006   tubby isoform b 
TUB                   0.006   tubby isoform a 
ZIM2                  0.006   zinc finger, imprinted 2 
ZIM2                  0.006   zinc finger, imprinted 2 
ZIM2                  0.006   zinc finger, imprinted 2 
LOC100292927          0.006   PREDICTED: hypothetical protein 
FLJ20021              0.006   PREDICTED: hypothetical protein 
LOC100290264          0.006   PREDICTED: hypothetical protein XP_002346783 
FLJ20021              0.006   PREDICTED: hypothetical protein 
LOC100289003          0.006   PREDICTED: hypothetical protein XP_002342618 
FLJ20021              0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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