Guide to the Human Genome
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Name: LOC100292359 Sequence: fasta or formatted (75aa) NCBI GI: 239753670
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          3           1
 C cysteine            0.0          0           0
 D aspartate           4.0          3           2
 E glutamate          14.7         11           2
 F phenylalanine       6.7          5           1
 G glycine             1.3          1           1
 H histidine           0.0          0           0
 I isoleucine          5.3          4           2
 K lysine              9.3          7           1
 L leucine            10.7          8           2
 M methionine          4.0          3           1
 N asparagine          2.7          2           1
 P proline             4.0          3           2
 Q glutamine           6.7          5           2
 R arginine           12.0          9           2
 S serine              2.7          2           1
 T threonine           1.3          1           1
 V valine              5.3          4           1
 W tryptophan          4.0          3           1
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291478          1.000   PREDICTED: hypothetical protein XP_002346583 
LOC100287402          1.000   PREDICTED: hypothetical protein XP_002342425 
LOC100131801          0.923   PREDICTED: hypothetical protein 
LOC100131801          0.923   PREDICTED: hypothetical protein 
LOC283685             0.092   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.062   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.046   trichohyalin 
TCHP                  0.038   trichoplein 
TCHP                  0.038   trichoplein 
LOC283767             0.038   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.031   golgi autoantigen, golgin subfamily a-like 
GOLGB1                0.031   golgi autoantigen, golgin subfamily b, macrogolgin ...
RASAL2                0.023   RAS protein activator like 2 isoform 2 
RASAL2                0.023   RAS protein activator like 2 isoform 1 
BAT2L                 0.023   HLA-B associated transcript 2-like 
LOC645202             0.023   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.023   PREDICTED: Putative golgin subfamily A member 6-lik...
SAFB2                 0.023   scaffold attachment factor B2 
SLK                   0.023   serine/threonine kinase 2 
SFPQ                  0.023   splicing factor proline/glutamine rich (polypyrimidin...
BAZ1A                 0.023   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.023   bromodomain adjacent to zinc finger domain, 1A isofo...
VPS13D                0.023   vacuolar protein sorting 13D isoform 2 
CROP                  0.023   cisplatin resistance-associated overexpressed protei...
CROP                  0.023   cisplatin resistance-associated overexpressed protei...
VPS13D                0.023   vacuolar protein sorting 13D isoform 1 
LOC651807             0.023   PREDICTED: hypothetical protein 
NRK                   0.023   Nik related kinase 
LRRIQ1                0.023   leucine-rich repeats and IQ motif containing 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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