Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292064 Sequence: fasta or formatted (244aa) NCBI GI: 239753040
Description:

PREDICTED: hypothetical protein XP_002345331

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         28           2
 C cysteine            2.9          7           1
 D aspartate           1.6          4           1
 E glutamate           2.9          7           1
 F phenylalanine       2.5          6           1
 G glycine             6.1         15           2
 H histidine           2.0          5           1
 I isoleucine          1.2          3           1
 K lysine              2.0          5           1
 L leucine            16.8         41           4
 M methionine          1.6          4           1
 N asparagine          0.4          1           1
 P proline            13.9         34           4
 Q glutamine           1.6          4           1
 R arginine            8.6         21           2
 S serine             12.3         30           2
 T threonine           4.5         11           1
 V valine              4.5         11           2
 W tryptophan          2.5          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345331 
LOC100290378          1.000   PREDICTED: hypothetical protein XP_002347782 
LOC100287901          1.000   PREDICTED: hypothetical protein XP_002342210 
RREB1                 0.025   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.025   ras responsive element binding protein 1 isoform 1 [...
LOC100293034          0.021   PREDICTED: similar to c-jun 
LOC100291417          0.021   PREDICTED: hypothetical protein XP_002346430 
LOC100288387          0.021   PREDICTED: hypothetical protein XP_002342128 
IL16                  0.021   interleukin 16 isoform 2 
IL16                  0.021   interleukin 16 isoform 1 precursor 
AHDC1                 0.021   AT hook, DNA binding motif, containing 1 
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.021   retinoblastoma protein-binding zinc finger protein i...
LOC100288635          0.019   PREDICTED: hypothetical protein 
LOC100288635          0.019   PREDICTED: hypothetical protein XP_002343184 
ADAMTS2               0.019   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS2               0.019   ADAM metallopeptidase with thrombospondin type 1 mo...
SNX26                 0.019   sorting nexin 26 
PRCC                  0.019   papillary renal cell carcinoma translocation-associa...
PRCC                  0.019   papillary renal cell carcinoma translocation-associa...
DUSP9                 0.019   dual specificity phosphatase 9 
WASF1                 0.017   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.017   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.017   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.017   Wiskott-Aldrich syndrome protein family member 1 [Hom...
SREBF1                0.017   sterol regulatory element binding transcription fact...
SREBF1                0.017   sterol regulatory element binding transcription fact...
DYRK1B                0.017   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.017   dual-specificity tyrosine-(Y)-phosphorylation regulat...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press