Guide to the Human Genome
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Name: HECTD1 Sequence: fasta or formatted (2610aa) NCBI GI: 118498337
Description:

HECT domain containing 1

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4        166           3
 C cysteine            2.0         53           1
 D aspartate           6.7        174           4
 E glutamate           7.6        198           4
 F phenylalanine       3.3         85           2
 G glycine             6.6        171           3
 H histidine           1.8         48           2
 I isoleucine          3.9        101           2
 K lysine              4.9        128           4
 L leucine            10.5        275           3
 M methionine          2.1         54           1
 N asparagine          3.9        101           2
 P proline             4.8        124           3
 Q glutamine           3.8         98           2
 R arginine            6.2        162           3
 S serine             10.0        262           4
 T threonine           6.6        171           2
 V valine              5.8        152           3
 W tryptophan          1.4         36           1
 Y tyrosine            2.0         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HECT domain containing 1 
TRIP12                0.030   thyroid hormone receptor interactor 12 
HACE1                 0.018   HECT domain and ankyrin repeat containing, E3 ubiqu...
UBE3A                 0.017   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.017   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.017   ubiquitin protein ligase E3A isoform 2 
WWP2                  0.017   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.017   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP1                  0.017   WW domain containing E3 ubiquitin protein ligase 1 [...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally dow...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
NEDD4L                0.016   neural precursor cell expressed, developmentally do...
UBE3C                 0.016   ubiquitin protein ligase E3C 
ITCH                  0.015   itchy homolog E3 ubiquitin protein ligase 
HUWE1                 0.014   HECT, UBA and WWE domain containing 1 
SMURF2                0.013   SMAD specific E3 ubiquitin protein ligase 2 
HERC2                 0.013   hect domain and RLD 2 
HECTD2                0.012   HECT domain containing 2 isoform a 
NEDD4                 0.012   neural precursor cell expressed, developmentally do...
NEDD4                 0.012   neural precursor cell expressed, developmentally do...
SMURF1                0.011   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.011   Smad ubiquitination regulatory factor 1 isoform 2 [H...
HERC3                 0.011   hect domain and RLD 3 
UBE3B                 0.011   ubiquitin protein ligase E3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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