Guide to the Human Genome
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Name: LOC100290572 Sequence: fasta or formatted (130aa) NCBI GI: 239747730
Description:

PREDICTED: hypothetical protein XP_002348256

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         16           3
 C cysteine            3.1          4           1
 D aspartate           2.3          3           1
 E glutamate           3.1          4           1
 F phenylalanine       1.5          2           1
 G glycine            11.5         15           1
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              1.5          2           1
 L leucine             7.7         10           2
 M methionine          0.8          1           1
 N asparagine          1.5          2           1
 P proline            13.1         17           2
 Q glutamine           2.3          3           1
 R arginine           14.6         19           2
 S serine             10.8         14           2
 T threonine           5.4          7           1
 V valine              1.5          2           1
 W tryptophan          1.5          2           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348256 
LOC100292030          1.000   PREDICTED: hypothetical protein XP_002345578 
LOC100289575          0.984   PREDICTED: hypothetical protein XP_002342245 
LOC643368             0.044   PREDICTED: similar to hCG1803335 
ARHGEF15              0.044   Rho guanine exchange factor 15 
LOC100290436          0.040   PREDICTED: hypothetical protein XP_002347616 
LOC100287267          0.040   PREDICTED: hypothetical protein XP_002343446 
HNRNPK                0.040   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.040   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.040   heterogeneous nuclear ribonucleoprotein K isoform a ...
SHC2                  0.040   SHC (Src homology 2 domain containing) transforming...
PPP1R13L              0.036   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.036   protein phosphatase 1, regulatory subunit 13 like [H...
LOC100128074          0.032   PREDICTED: hypothetical protein 
NKD2                  0.032   naked cuticle homolog 2 
HHIPL1                0.032   HHIP-like protein 1 isoform a 
SAMD1                 0.032   sterile alpha motif domain containing 1 
LOC643368             0.028   PREDICTED: similar to hCG1803335 
LOC100288686          0.028   PREDICTED: hypothetical protein XP_002342615 
PCNXL3                0.028   pecanex-like 3 
LOC645602             0.028   PREDICTED: hypothetical protein 
LOC645602             0.028   PREDICTED: hypothetical protein 
LOC645602             0.028   PREDICTED: hypothetical protein 
FEV                   0.028   FEV (ETS oncogene family) 
SRRM2                 0.028   splicing coactivator subunit SRm300 
TD1                   0.024   TLX1 divergent 
LOC100291482          0.024   PREDICTED: hypothetical protein XP_002347725 
LOC646509             0.024   PREDICTED: hypothetical protein 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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