Guide to the Human Genome
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Search of human proteins with 239745573

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
         (120 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ...   250   2e-67
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ...   250   2e-67
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ...   250   2e-67
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]            50   3e-07
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]            50   3e-07
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]            50   3e-07
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]     45   1e-05
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]           40   3e-04
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]                   40   4e-04
gi|116256455 zinc finger protein 429 [Homo sapiens]                    38   0.002
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s...    37   0.003
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ...    33   0.038
gi|9624988 hypothetical protein LOC56260 [Homo sapiens]                33   0.065
gi|148277022 selenoprotein P isoform 2 [Homo sapiens]                  32   0.14 
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo...    31   0.19 
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot...    31   0.19 
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]           30   0.55 
gi|144953913 zinc finger protein 714 [Homo sapiens]                    30   0.55 
gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]          29   0.72 
gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]          29   0.72 
gi|33356179 transcription termination factor, RNA polymerase I [...    29   0.94 
gi|118600985 zinc finger protein 91 [Homo sapiens]                     28   1.6  
gi|115298678 complement component 3 precursor [Homo sapiens]           28   2.1  
gi|169218213 PREDICTED: similar to complement component C3, part...    28   2.1  
gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens]                 27   3.6  

>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
           sapiens]
          Length = 120

 Score =  250 bits (638), Expect = 2e-67
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
           MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60

Query: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
           sapiens]
          Length = 120

 Score =  250 bits (638), Expect = 2e-67
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
           MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60

Query: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
           sapiens]
          Length = 120

 Score =  250 bits (638), Expect = 2e-67
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
           MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ
Sbjct: 1   MPIIPSLWEAGRSLEARSSKIFCILIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60

Query: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY
Sbjct: 61  PKNLCSHFSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
          Length = 374

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 74  YIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
           Y +  R  LG VAH  NPSTLGGRGGWITR
Sbjct: 337 YKEYYRAGLGAVAHACNPSTLGGRGGWITR 366


>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
          Length = 342

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 74  YIKKERLWLGPVAHTYNPSTLGGRGGWITRGQE 106
           YI K+ L L  VAHT NPSTLGG+G WIT  +E
Sbjct: 306 YICKKDL-LAAVAHTCNPSTLGGQGEWITGSRE 337


>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
          Length = 881

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 72  TTYIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
           T  ++    W G VAH  NPSTLGG+GG ITR
Sbjct: 462 TVNLRSRNGWPGAVAHACNPSTLGGQGGRITR 493


>gi|116256455 zinc finger protein 429 [Homo sapiens]
          Length = 674

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 17/22 (77%), Positives = 18/22 (81%)

Query: 82  LGPVAHTYNPSTLGGRGGWITR 103
           +G VAH  NPSTLGGRGG ITR
Sbjct: 645 MGVVAHACNPSTLGGRGGRITR 666


>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
           sapiens]
          Length = 291

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/21 (80%), Positives = 17/21 (80%)

Query: 83  GPVAHTYNPSTLGGRGGWITR 103
           G VAH  NPSTLGGRGG ITR
Sbjct: 266 GAVAHACNPSTLGGRGGRITR 286


>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
           [Homo sapiens]
          Length = 165

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 83  GPVAHTYNPSTLGGRGGWITRGQEFKTS 110
           G VA+  N STLGGRGG ITR +  K S
Sbjct: 77  GTVAYACNTSTLGGRGGRITREEHKKHS 104


>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
          Length = 159

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)

Query: 1  MPIIPSLWE--AGRSLEARSSK 20
          MP+IP+LWE  AGRS E RSSK
Sbjct: 42 MPVIPALWEAKAGRSPEVRSSK 63


>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
          Length = 411

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 82  LGPVAHTYNPSTLGGRGGWITR 103
           L  VAH  NPSTLGG+G  ITR
Sbjct: 5   LDAVAHACNPSTLGGQGRRITR 26


>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
           sapiens]
          Length = 269

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 1/22 (4%)

Query: 81  WL-GPVAHTYNPSTLGGRGGWI 101
           WL G VA  YNPST+ GRGG I
Sbjct: 247 WLPGAVAQVYNPSTVEGRGGQI 268


>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
           2 isoform 2 [Homo sapiens]
          Length = 566

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 83  GPVAHTYNPSTLGGRGGWI 101
           G VAH   PSTLGG+G WI
Sbjct: 547 GAVAHACYPSTLGGQGRWI 565


>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
          Length = 858

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 12/16 (75%), Positives = 16/16 (100%)

Query: 102 TRGQEFKTSLANMVEP 117
           +RGQEF+TSLAN+V+P
Sbjct: 681 SRGQEFETSLANIVKP 696


>gi|144953913 zinc finger protein 714 [Homo sapiens]
          Length = 555

 Score = 29.6 bits (65), Expect = 0.55
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 68  FSFPTTYIKKERLWLGPVAHTYNPSTLGGRGGWITR 103
           F+  +T  K  ++  G VAH  NP+TL G G  I R
Sbjct: 490 FNQSSTLTKHRKIQQGMVAHACNPNTLRGLGEQIAR 525


>gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]
          Length = 378

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 89  YNPSTLGGRGGWI 101
           YNPSTLGG+G WI
Sbjct: 365 YNPSTLGGQGVWI 377


>gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]
          Length = 464

 Score = 29.3 bits (64), Expect = 0.72
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 89  YNPSTLGGRGGWI 101
           YNPSTLGG+G WI
Sbjct: 451 YNPSTLGGQGVWI 463


>gi|33356179 transcription termination factor, RNA polymerase I
           [Homo sapiens]
          Length = 905

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 75  IKKERLWLGP-VAHTYNPSTLGGRGGWI 101
           I+KE     P +AH  N STLGG+G WI
Sbjct: 877 IEKESEGQAPCMAHACNSSTLGGQGRWI 904


>gi|118600985 zinc finger protein 91 [Homo sapiens]
          Length = 1191

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 102  TRGQEFKTSLANMVEPCLY 120
            +RGQE +T LAN V+P LY
Sbjct: 1173 SRGQEMETILANTVKPLLY 1191


>gi|115298678 complement component 3 precursor [Homo sapiens]
          Length = 1663

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 25  LIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
           +++V +   Y F++  +TI+  G  +LY ++ +N++
Sbjct: 120 VVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHK 155


>gi|169218213 PREDICTED: similar to complement component C3, partial
           [Homo sapiens]
          Length = 1295

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 25  LIVVVVTQLYKFVKIQRTIHLKGRLLLYEVYLINNQ 60
           +++V +   Y F++  +TI+  G  +LY ++ +N++
Sbjct: 120 VVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHK 155


>gi|4501959 alpha-1B-adrenergic receptor [Homo sapiens]
          Length = 520

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 76  KKERLWLGPVAHTYNPSTLGGRGGWITRGQEFKTSL 111
           ++ R  LG  A+TY P T   RGG + R Q  K SL
Sbjct: 375 RRRRRRLGGCAYTYRPWT---RGGSLERSQSRKDSL 407


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,668,901
Number of Sequences: 37866
Number of extensions: 176954
Number of successful extensions: 408
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 27
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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