Guide to the Human Genome
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Name: LOC100287593 Sequence: fasta or formatted (120aa) NCBI GI: 239745573
Description:

PREDICTED: hypothetical protein XP_002344133

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          4           1
 C cysteine            2.5          3           1
 D aspartate           0.0          0           0
 E glutamate           5.0          6           1
 F phenylalanine       4.2          5           1
 G glycine             6.7          8           2
 H histidine           2.5          3           1
 I isoleucine          8.3         10           2
 K lysine              6.7          8           2
 L leucine            12.5         15           3
 M methionine          1.7          2           1
 N asparagine          4.2          5           2
 P proline             5.8          7           1
 Q glutamine           3.3          4           1
 R arginine            5.8          7           1
 S serine              6.7          8           2
 T threonine           6.7          8           2
 V valine              6.7          8           4
 W tryptophan          2.5          3           1
 Y tyrosine            5.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344133 
LOC100292050          1.000   PREDICTED: hypothetical protein XP_002344942 
LOC100290814          1.000   PREDICTED: hypothetical protein XP_002347710 
LOC100128895          0.111   PREDICTED: hypothetical protein 
LOC100128895          0.111   PREDICTED: hypothetical protein 
LOC100128895          0.111   PREDICTED: hypothetical protein 
FBLIM1                0.089   filamin-binding LIM protein-1 isoform b 
POLR1C                0.067   RNA polymerase I subunit isoform 2 
PKP2                  0.067   plakophilin 2 isoform 2b 
ZNF429                0.058   zinc finger protein 429 
YIF1B                 0.053   Yip1 interacting factor homolog B isoform 7 
BIRC5                 0.036   baculoviral IAP repeat-containing protein 5 isoform ...
C8orf44               0.036   hypothetical protein LOC56260 
SEPP1                 0.031   selenoprotein P isoform 2 
GAMT                  0.027   guanidinoacetate N-methyltransferase isoform b [Homo...
ADAMTS2               0.027   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100294407          0.022   PREDICTED: similar to hCG2039376 
ZNF714                0.022   zinc finger protein 714 
ZNF669                0.018   zinc finger protein 669 isoform 2 
ZNF669                0.018   zinc finger protein 669 isoform 1 
TTF1                  0.018   transcription termination factor, RNA polymerase I [...
ZNF91                 0.013   zinc finger protein 91 
C3                    0.013   complement component 3 precursor 
LOC100133511          0.013   PREDICTED: similar to complement component C3, part...
ADRA1B                0.009   alpha-1B-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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