Guide to the Human Genome
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Name: LOC100287129 Sequence: fasta or formatted (229aa) NCBI GI: 239745364
Description:

PREDICTED: hypothetical protein XP_002343480

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         34           2
 C cysteine            1.3          3           1
 D aspartate           1.3          3           1
 E glutamate           1.7          4           1
 F phenylalanine       0.9          2           2
 G glycine            16.6         38           3
 H histidine           1.3          3           1
 I isoleucine          0.4          1           1
 K lysine              0.4          1           1
 L leucine             7.0         16           1
 M methionine          1.3          3           1
 N asparagine          0.4          1           1
 P proline            13.1         30           3
 Q glutamine           4.4         10           2
 R arginine           17.9         41           2
 S serine              7.0         16           1
 T threonine           5.2         12           2
 V valine              1.7          4           1
 W tryptophan          3.1          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343480 
LOC100291136          1.000   PREDICTED: hypothetical protein XP_002347630 
TAF4                  0.070   TBP-associated factor 4 
SYN1                  0.063   synapsin I isoform Ia 
SYN1                  0.063   synapsin I isoform Ib 
PRB2                  0.059   proline-rich protein BstNI subfamily 2 
PRB1                  0.053   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.050   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.048   nascent polypeptide-associated complex alpha subuni...
PRB1                  0.048   proline-rich protein BstNI subfamily 1 isoform 2 pre...
LOC100292590          0.046   PREDICTED: hypothetical protein 
PRB3                  0.046   proline-rich protein BstNI subfamily 3 precursor [H...
LOC646509             0.044   PREDICTED: hypothetical protein 
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 
LOC100131102          0.042   PREDICTED: hypothetical protein 
LOC100131102          0.042   PREDICTED: hypothetical protein 
C9orf75               0.042   hypothetical protein LOC286262 isoform 2 
C9orf75               0.042   hypothetical protein LOC286262 isoform 1 
PRH1                  0.042   proline-rich protein HaeIII subfamily 1 
PRH2                  0.042   proline-rich protein HaeIII subfamily 2 
PRH2                  0.042   proline-rich protein HaeIII subfamily 2 
SYNPO2L               0.042   synaptopodin 2-like isoform a 
WBP11                 0.042   WW domain binding protein 11 
COL1A1                0.039   alpha 1 type I collagen preproprotein 
LOC100293385          0.039   PREDICTED: hypothetical protein 
LOC100290381          0.039   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.039   PREDICTED: hypothetical protein XP_002342725 
SAMD1                 0.039   sterile alpha motif domain containing 1 
OGFR                  0.037   opioid growth factor receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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