Guide to the Human Genome
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Name: NKX1-2 Sequence: fasta or formatted (332aa) NCBI GI: 239744223
Description:

PREDICTED: NK1 homeobox 2

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [310aa] NK1 homeobox 2
alt mRNA [332aa] PREDICTED: NK1 homeobox 2
alt mRNA [332aa] PREDICTED: NK1 homeobox 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         51           3
 C cysteine            0.9          3           1
 D aspartate           3.6         12           1
 E glutamate           5.7         19           4
 F phenylalanine       3.9         13           1
 G glycine            11.4         38           7
 H histidine           1.8          6           2
 I isoleucine          0.9          3           1
 K lysine              3.3         11           2
 L leucine             8.7         29           2
 M methionine          0.3          1           1
 N asparagine          1.8          6           1
 P proline            11.7         39           2
 Q glutamine           3.9         13           1
 R arginine            9.0         30           4
 S serine              8.1         27           2
 T threonine           3.9         13           1
 V valine              3.0         10           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: NK1 homeobox 2 
NKX1-2                1.000   PREDICTED: NK1 homeobox 2 
NKX1-2                1.000   PREDICTED: NK1 homeobox 2 
NKX1-2                0.912   NK1 homeobox 2 
NKX1-1                0.252   PREDICTED: NK1 homeobox 1 
NKX1-1                0.252   PREDICTED: HPX-153 homeobox 
NKX1-1                0.230   PREDICTED: NK1 homeobox 1 
MSX1                  0.106   msh homeobox 1 
MNX1                  0.104   homeo box HB9 
DLX2                  0.103   distal-less homeobox 2 
NKX3-2                0.100   NK3 homeobox 2 
ARX                   0.097   aristaless related homeobox 
PHOX2B                0.097   paired-like homeobox 2b 
HOXB4                 0.095   homeobox B4 
HMX3                  0.095   H6 family homeobox 3 
GBX1                  0.095   gastrulation brain homeo box 1 
HOXB3                 0.095   homeobox B3 
RAX                   0.092   retina and anterior neural fold homeobox 
BARHL1                0.092   BarH-like homeobox 1 
BARX2                 0.092   BarH-like homeobox 2 
HMX1                  0.091   homeo box (H6 family) 1 
HOXA4                 0.091   homeobox A4 
PDX1                  0.089   pancreatic and duodenal homeobox 1 
EN1                   0.088   engrailed homeobox 1 
NKX2-3                0.088   NK2 transcription factor related, locus 3 
HOXA3                 0.086   homeobox A3 isoform a 
HOXA3                 0.086   homeobox A3 isoform a 
BARHL2                0.086   BarH-like homeobox 2 
GBX2                  0.086   gastrulation brain homeo box 2 
HOXC4                 0.084   homeobox C4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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