Guide to the Human Genome
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Name: LDLRAD2 Sequence: fasta or formatted (272aa) NCBI GI: 224591414
Description:

low density lipoprotein receptor class A domain containing 2

Referenced in:

Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         31           3
 C cysteine            4.4         12           2
 D aspartate           5.5         15           1
 E glutamate           2.9          8           1
 F phenylalanine       4.0         11           2
 G glycine            10.3         28           1
 H histidine           0.7          2           1
 I isoleucine          1.5          4           1
 K lysine              0.0          0           0
 L leucine            11.4         31           4
 M methionine          0.7          2           1
 N asparagine          1.5          4           1
 P proline            11.0         30           2
 Q glutamine           4.4         12           1
 R arginine            7.4         20           2
 S serine              9.6         26           2
 T threonine           5.5         15           1
 V valine              4.0         11           1
 W tryptophan          1.8          5           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor class A domain con... 
LRP3                  0.044   low density lipoprotein receptor-related protein 3 ...
ST14                  0.040   matriptase 
LRP2                  0.040   low density lipoprotein-related protein 2 
LRP1                  0.039   low density lipoprotein-related protein 1 
LRP1B                 0.037   low density lipoprotein-related protein 1B precursor...
HSPG2                 0.033   heparan sulfate proteoglycan 2 
SORL1                 0.031   sortilin-related receptor containing LDLR class A rep...
LRP12                 0.031   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.031   low density lipoprotein-related protein 12 isoform a ...
LRP10                 0.029   low density lipoprotein receptor-related protein 10 ...
VLDLR                 0.029   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.029   very low density lipoprotein receptor isoform a [Hom...
LOC100289782          0.028   PREDICTED: hypothetical protein XP_002347588 
PRSS7                 0.028   enterokinase precursor 
C6                    0.028   complement component 6 precursor 
C6                    0.028   complement component 6 precursor 
LOC100288568          0.026   PREDICTED: hypothetical protein XP_002343338 
LRP4                  0.026   low density lipoprotein receptor-related protein 4 ...
CUBN                  0.026   cubilin 
LDLRAD3               0.024   low density lipoprotein receptor class A domain cont...
LDLR                  0.024   low density lipoprotein receptor precursor 
CORIN                 0.024   corin 
SSPO                  0.024   SCO-spondin 
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.022   low density lipoprotein receptor-related protein 8 i...
C8B                   0.022   complement component 8, beta polypeptide preproprotei...
MFRP                  0.020   membrane frizzled-related protein 
MEGF10                0.020   multiple EGF-like-domains 10 
COL17A1               0.020   alpha 1 type XVII collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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